data_8DIP # _model_server_result.job_id re5dT5Fd4sVQDU1zBe3I3g _model_server_result.datetime_utc '2024-11-13 21:50:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dip # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 8DIP # _exptl.entry_id 8DIP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 668.866 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Hexa Vinylpyrrolidone K15' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DIP _cell.length_a 89.316 _cell.length_b 89.316 _cell.length_c 134.121 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DIP _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc7 B MN MN . A MN 201 1_555 E O13 SE9 . A SE9 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc8 B MN MN . A MN 201 1_555 E O15 SE9 . A SE9 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc9 C MN MN . A MN 202 1_555 E O10 SE9 . A SE9 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc10 C MN MN . A MN 202 1_555 E O13 SE9 . A SE9 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? # _chem_comp.formula 'C36 H56 N6 O6' _chem_comp.formula_weight 668.866 _chem_comp.id QQ4 _chem_comp.mon_nstd_flag . _chem_comp.name 'Hexa Vinylpyrrolidone K15' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-dodecane-1,3,5,7,9,11-hexayl]hexa(pyrrolidin-2-one)" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 QQ4 sing 277 n n C21 N02 QQ4 sing 278 n n C20 C19 QQ4 sing 279 n n C19 C42 QQ4 sing 280 n n N02 C12 QQ4 sing 281 n n N02 C42 QQ4 sing 282 n n C12 C11 QQ4 sing 283 n n C42 O05 QQ4 doub 284 n n C38 C41 QQ4 sing 285 n n C38 N07 QQ4 sing 286 n n C41 C40 QQ4 sing 287 n n C10 C09 QQ4 sing 288 n n C11 C01 QQ4 sing 289 n n C40 C39 QQ4 sing 290 n n N07 C09 QQ4 sing 291 n n N07 C39 QQ4 sing 292 n n C01 C02 QQ4 sing 293 n n C01 N03 QQ4 sing 294 n n C08 C09 QQ4 sing 295 n n C08 C07 QQ4 sing 296 n n C02 C03 QQ4 sing 297 n n C39 O07 QQ4 doub 298 n n C26 C27 QQ4 sing 299 n n C26 N04 QQ4 sing 300 n n C22 N03 QQ4 sing 301 n n C22 C25 QQ4 sing 302 n n N03 C23 QQ4 sing 303 n n C06 C07 QQ4 sing 304 n n C06 C05 QQ4 sing 305 n n C07 N06 QQ4 sing 306 n n C27 C28 QQ4 sing 307 n n C03 N04 QQ4 sing 308 n n C03 C04 QQ4 sing 309 n n C25 C24 QQ4 sing 310 n n N04 C29 QQ4 sing 311 n n C04 C05 QQ4 sing 312 n n O04 C30 QQ4 doub 313 n n C23 O02 QQ4 doub 314 n n C23 C24 QQ4 sing 315 n n C05 N05 QQ4 sing 316 n n N06 C34 QQ4 sing 317 n n N06 C37 QQ4 sing 318 n n C34 C35 QQ4 sing 319 n n C28 C29 QQ4 sing 320 n n C29 O03 QQ4 doub 321 n n C30 N05 QQ4 sing 322 n n C30 C31 QQ4 sing 323 n n N05 C33 QQ4 sing 324 n n C37 O06 QQ4 doub 325 n n C37 C36 QQ4 sing 326 n n C35 C36 QQ4 sing 327 n n C31 C32 QQ4 sing 328 n n C33 C32 QQ4 sing 329 n n C12 H1 QQ4 sing 330 n n C12 H2 QQ4 sing 331 n n C11 H3 QQ4 sing 332 n n C11 H4 QQ4 sing 333 n n C10 H5 QQ4 sing 334 n n C10 H6 QQ4 sing 335 n n C10 H7 QQ4 sing 336 n n C01 H8 QQ4 sing 337 n n C02 H9 QQ4 sing 338 n n C02 H10 QQ4 sing 339 n n C03 H11 QQ4 sing 340 n n C04 H12 QQ4 sing 341 n n C04 H13 QQ4 sing 342 n n C05 H14 QQ4 sing 343 n n C06 H15 QQ4 sing 344 n n C06 H16 QQ4 sing 345 n n C07 H17 QQ4 sing 346 n n C08 H18 QQ4 sing 347 n n C08 H19 QQ4 sing 348 n n C09 H20 QQ4 sing 349 n n C19 H21 QQ4 sing 350 n n C19 H22 QQ4 sing 351 n n C20 H23 QQ4 sing 352 n n C20 H24 QQ4 sing 353 n n C21 H25 QQ4 sing 354 n n C21 H26 QQ4 sing 355 n n C22 H27 QQ4 sing 356 n n C22 H28 QQ4 sing 357 n n C24 H29 QQ4 sing 358 n n C24 H30 QQ4 sing 359 n n C25 H31 QQ4 sing 360 n n C25 H32 QQ4 sing 361 n n C26 H33 QQ4 sing 362 n n C26 H34 QQ4 sing 363 n n C27 H35 QQ4 sing 364 n n C27 H36 QQ4 sing 365 n n C28 H37 QQ4 sing 366 n n C28 H38 QQ4 sing 367 n n C31 H39 QQ4 sing 368 n n C31 H40 QQ4 sing 369 n n C32 H41 QQ4 sing 370 n n C32 H42 QQ4 sing 371 n n C33 H43 QQ4 sing 372 n n C33 H44 QQ4 sing 373 n n C34 H45 QQ4 sing 374 n n C34 H46 QQ4 sing 375 n n C35 H47 QQ4 sing 376 n n C35 H48 QQ4 sing 377 n n C36 H49 QQ4 sing 378 n n C36 H50 QQ4 sing 379 n n C38 H51 QQ4 sing 380 n n C38 H52 QQ4 sing 381 n n C40 H53 QQ4 sing 382 n n C40 H54 QQ4 sing 383 n n C41 H55 QQ4 sing 384 n n C41 H56 QQ4 sing 385 n n # _atom_sites.entry_id 8DIP _atom_sites.fract_transf_matrix[1][1] 0.011196 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011196 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 201 MN MN . C 2 MN A 1 202 202 MN MN . D 3 QQ4 A 1 203 203 QQ4 PVP . E 4 SE9 A 1 204 204 SE9 007 . F 5 SO4 A 1 205 1 SO4 SO4 . G 6 HOH A 1 301 2 HOH HOH . G 6 HOH A 2 302 8 HOH HOH . G 6 HOH A 3 303 29 HOH HOH . G 6 HOH A 4 304 5 HOH HOH . G 6 HOH A 5 305 6 HOH HOH . G 6 HOH A 6 306 17 HOH HOH . G 6 HOH A 7 307 25 HOH HOH . G 6 HOH A 8 308 26 HOH HOH . G 6 HOH A 9 309 13 HOH HOH . G 6 HOH A 10 310 3 HOH HOH . G 6 HOH A 11 311 1 HOH HOH . G 6 HOH A 12 312 21 HOH HOH . G 6 HOH A 13 313 30 HOH HOH . G 6 HOH A 14 314 9 HOH HOH . G 6 HOH A 15 315 10 HOH HOH . G 6 HOH A 16 316 11 HOH HOH . G 6 HOH A 17 317 27 HOH HOH . G 6 HOH A 18 318 23 HOH HOH . G 6 HOH A 19 319 22 HOH HOH . G 6 HOH A 20 320 32 HOH HOH . G 6 HOH A 21 321 24 HOH HOH . G 6 HOH A 22 322 31 HOH HOH . G 6 HOH A 23 323 4 HOH HOH . G 6 HOH A 24 324 28 HOH HOH . G 6 HOH A 25 325 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 QQ4 . . . D 3 2.287 9.226 11.443 1 107.42 ? C11 QQ4 203 A 1 HETATM 2 C C10 QQ4 . . . D 3 -3.119 12.938 9.502 1 112.82 ? C10 QQ4 203 A 1 HETATM 3 C C01 QQ4 . . . D 3 3.021 10.188 12.368 1 111.51 ? C01 QQ4 203 A 1 HETATM 4 C C02 QQ4 . . . D 3 2.859 11.622 11.845 1 110.34 ? C02 QQ4 203 A 1 HETATM 5 C C03 QQ4 . . . D 3 2.816 12.613 13.012 1 105.46 ? C03 QQ4 203 A 1 HETATM 6 C C04 QQ4 . . . D 3 2.168 13.948 12.591 1 104.95 ? C04 QQ4 203 A 1 HETATM 7 C C05 QQ4 . . . D 3 0.63 14.037 12.681 1 102.37 ? C05 QQ4 203 A 1 HETATM 8 C C06 QQ4 . . . D 3 0.054 14.124 11.257 1 111.5 ? C06 QQ4 203 A 1 HETATM 9 C C07 QQ4 . . . D 3 -1.318 14.798 11.078 1 113.28 ? C07 QQ4 203 A 1 HETATM 10 C C08 QQ4 . . . D 3 -1.558 14.892 9.568 1 112.94 ? C08 QQ4 203 A 1 HETATM 11 C C09 QQ4 . . . D 3 -2.951 14.414 9.141 1 108.04 ? C09 QQ4 203 A 1 HETATM 12 C C22 QQ4 . . . D 3 4.97 9.012 13.593 1 100.91 ? C22 QQ4 203 A 1 HETATM 13 C C23 QQ4 . . . D 3 5.502 10.015 11.51 1 113.98 ? C23 QQ4 203 A 1 HETATM 14 C C24 QQ4 . . . D 3 6.779 9.376 12.062 1 105.94 ? C24 QQ4 203 A 1 HETATM 15 C C25 QQ4 . . . D 3 6.253 8.375 13.076 1 98.56 ? C25 QQ4 203 A 1 HETATM 16 C C26 QQ4 . . . D 3 4.679 12.536 14.794 1 109.49 ? C26 QQ4 203 A 1 HETATM 17 C C27 QQ4 . . . D 3 6.207 12.504 14.684 1 96.69 ? C27 QQ4 203 A 1 HETATM 18 C C28 QQ4 . . . D 3 6.522 13.432 13.514 1 97.86 ? C28 QQ4 203 A 1 HETATM 19 C C29 QQ4 . . . D 3 5.266 13.377 12.66 1 102.15 ? C29 QQ4 203 A 1 HETATM 20 C C30 QQ4 . . . D 3 -0.393 11.616 12.983 1 126.36 ? C30 QQ4 203 A 1 HETATM 21 C C31 QQ4 . . . D 3 -0.914 10.845 14.181 1 124.84 ? C31 QQ4 203 A 1 HETATM 22 C C32 QQ4 . . . D 3 -1.218 11.912 15.198 1 108.6 ? C32 QQ4 203 A 1 HETATM 23 C C33 QQ4 . . . D 3 -0.186 12.997 14.911 1 112.14 ? C33 QQ4 203 A 1 HETATM 24 C C34 QQ4 . . . D 3 -0.689 17.336 10.973 1 100.55 ? C34 QQ4 203 A 1 HETATM 25 C C35 QQ4 . . . D 3 -0.949 18.527 11.906 1 84.31 ? C35 QQ4 203 A 1 HETATM 26 C C36 QQ4 . . . D 3 -2.06 18.132 12.82 1 79.53 ? C36 QQ4 203 A 1 HETATM 27 C C37 QQ4 . . . D 3 -2.236 16.649 12.668 1 96.3 ? C37 QQ4 203 A 1 HETATM 28 C C38 QQ4 . . . D 3 -5.01 14.699 10.689 1 107.61 ? C38 QQ4 203 A 1 HETATM 29 C C39 QQ4 . . . D 3 -4.239 16.63 9.546 1 115.23 ? C39 QQ4 203 A 1 HETATM 30 C C40 QQ4 . . . D 3 -5.446 17.038 10.382 1 101.43 ? C40 QQ4 203 A 1 HETATM 31 C C41 QQ4 . . . D 3 -6.141 15.723 10.664 1 98.82 ? C41 QQ4 203 A 1 HETATM 32 N N03 QQ4 . . . D 3 4.42 9.772 12.472 1 121.4 ? N03 QQ4 203 A 1 HETATM 33 N N04 QQ4 . . . D 3 4.182 12.834 13.457 1 107.96 ? N04 QQ4 203 A 1 HETATM 34 N N05 QQ4 . . . D 3 0.054 12.939 13.458 1 115.63 ? N05 QQ4 203 A 1 HETATM 35 N N06 QQ4 . . . D 3 -1.401 16.167 11.562 1 105.91 ? N06 QQ4 203 A 1 HETATM 36 N N07 QQ4 . . . D 3 -4.003 15.204 9.756 1 109.15 ? N07 QQ4 203 A 1 HETATM 37 O O02 QQ4 . . . D 3 5.422 10.596 10.48 1 111.23 ? O02 QQ4 203 A 1 HETATM 38 O O03 QQ4 . . . D 3 5.201 13.722 11.528 1 106.51 ? O03 QQ4 203 A 1 HETATM 39 O O04 QQ4 . . . D 3 -0.358 11.198 11.871 1 117.56 ? O04 QQ4 203 A 1 HETATM 40 O O06 QQ4 . . . D 3 -2.94 15.976 13.344 1 99.64 ? O06 QQ4 203 A 1 HETATM 41 O O07 QQ4 . . . D 3 -3.609 17.347 8.848 1 117.91 ? O07 QQ4 203 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 41 #