data_8DIV # _model_server_result.job_id 4viwJNBU8MIERrKIz9fz2g _model_server_result.datetime_utc '2024-11-23 01:45:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8div # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1303}' # _entry.id 8DIV # _exptl.entry_id 8DIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 678.94 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DIV _cell.length_a 124.578 _cell.length_b 124.578 _cell.length_c 190.927 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -124.578 -124.578 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -124.578 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -124.578 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C36 H73 N O8 P 1' _chem_comp.formula_weight 678.94 _chem_comp.id PX4 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PX4 sing 391 n n O1 H1P PX4 sing 392 n n O2 P1 PX4 doub 393 n n P1 O3 PX4 sing 394 n n P1 O4 PX4 sing 395 n n O3 C1 PX4 sing 396 n n C1 C2 PX4 sing 397 n n C1 H1 PX4 sing 398 n n C1 H2 PX4 sing 399 n n C2 N1 PX4 sing 400 n n C2 H3 PX4 sing 401 n n C2 H4 PX4 sing 402 n n N1 C3 PX4 sing 403 n n N1 C4 PX4 sing 404 n n N1 C5 PX4 sing 405 n n C3 H5 PX4 sing 406 n n C3 H6 PX4 sing 407 n n C3 H7 PX4 sing 408 n n C4 H8 PX4 sing 409 n n C4 H9 PX4 sing 410 n n C4 H10 PX4 sing 411 n n C5 H11 PX4 sing 412 n n C5 H12 PX4 sing 413 n n C5 H13 PX4 sing 414 n n O4 C6 PX4 sing 415 n n C6 C7 PX4 sing 416 n n C6 H14 PX4 sing 417 n n C6 H15 PX4 sing 418 n n C7 C8 PX4 sing 419 n n C7 O7 PX4 sing 420 n n C7 H16 PX4 sing 421 n n C8 O5 PX4 sing 422 n n C8 H17 PX4 sing 423 n n C8 H18 PX4 sing 424 n n O5 C9 PX4 sing 425 n n C9 O6 PX4 doub 426 n n C9 C10 PX4 sing 427 n n C10 C11 PX4 sing 428 n n C10 H19 PX4 sing 429 n n C10 H20 PX4 sing 430 n n C11 C12 PX4 sing 431 n n C11 H21 PX4 sing 432 n n C11 H22 PX4 sing 433 n n C12 C13 PX4 sing 434 n n C12 H23 PX4 sing 435 n n C12 H24 PX4 sing 436 n n C13 C14 PX4 sing 437 n n C13 H25 PX4 sing 438 n n C13 H26 PX4 sing 439 n n C14 C15 PX4 sing 440 n n C14 H27 PX4 sing 441 n n C14 H28 PX4 sing 442 n n C15 C16 PX4 sing 443 n n C15 H29 PX4 sing 444 n n C15 H30 PX4 sing 445 n n C16 C17 PX4 sing 446 n n C16 H31 PX4 sing 447 n n C16 H32 PX4 sing 448 n n C17 C18 PX4 sing 449 n n C17 H33 PX4 sing 450 n n C17 H34 PX4 sing 451 n n C18 C19 PX4 sing 452 n n C18 H35 PX4 sing 453 n n C18 H36 PX4 sing 454 n n C19 C20 PX4 sing 455 n n C19 H37 PX4 sing 456 n n C19 H38 PX4 sing 457 n n C20 C21 PX4 sing 458 n n C20 H39 PX4 sing 459 n n C20 H40 PX4 sing 460 n n C21 C22 PX4 sing 461 n n C21 H41 PX4 sing 462 n n C21 H42 PX4 sing 463 n n C22 H43 PX4 sing 464 n n C22 H44 PX4 sing 465 n n C22 H45 PX4 sing 466 n n O7 C23 PX4 sing 467 n n C23 O8 PX4 doub 468 n n C23 C24 PX4 sing 469 n n C24 C25 PX4 sing 470 n n C24 H46 PX4 sing 471 n n C24 H47 PX4 sing 472 n n C25 C26 PX4 sing 473 n n C25 H48 PX4 sing 474 n n C25 H49 PX4 sing 475 n n C26 C27 PX4 sing 476 n n C26 H50 PX4 sing 477 n n C26 H51 PX4 sing 478 n n C27 C28 PX4 sing 479 n n C27 H52 PX4 sing 480 n n C27 H53 PX4 sing 481 n n C28 C29 PX4 sing 482 n n C28 H54 PX4 sing 483 n n C28 H55 PX4 sing 484 n n C29 C30 PX4 sing 485 n n C29 H56 PX4 sing 486 n n C29 H57 PX4 sing 487 n n C30 C31 PX4 sing 488 n n C30 H58 PX4 sing 489 n n C30 H59 PX4 sing 490 n n C31 C32 PX4 sing 491 n n C31 H60 PX4 sing 492 n n C31 H61 PX4 sing 493 n n C32 C33 PX4 sing 494 n n C32 H62 PX4 sing 495 n n C32 H63 PX4 sing 496 n n C33 C34 PX4 sing 497 n n C33 H64 PX4 sing 498 n n C33 H65 PX4 sing 499 n n C34 C35 PX4 sing 500 n n C34 H66 PX4 sing 501 n n C34 H67 PX4 sing 502 n n C35 C36 PX4 sing 503 n n C35 H68 PX4 sing 504 n n C35 H69 PX4 sing 505 n n C36 H70 PX4 sing 506 n n C36 H71 PX4 sing 507 n n C36 H72 PX4 sing 508 n n # _atom_sites.entry_id 8DIV _atom_sites.fract_transf_matrix[1][1] 0.008027 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008027 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BGC A 1 1301 1301 BGC BGC . C 3 PX4 A 1 1302 1 PX4 PX4 . D 3 PX4 A 1 1303 2 PX4 PX4 . E 3 PX4 A 1 1304 3 PX4 PX4 . F 3 PX4 A 1 1305 4 PX4 PX4 . G 3 PX4 A 1 1306 5 PX4 PX4 . H 4 CPS A 1 1307 1 CPS CPS . I 4 CPS A 1 1308 2 CPS CPS . J 5 HOH A 1 1401 23 HOH HOH . J 5 HOH A 2 1402 4 HOH HOH . J 5 HOH A 3 1403 3 HOH HOH . J 5 HOH A 4 1404 22 HOH HOH . J 5 HOH A 5 1405 2 HOH HOH . J 5 HOH A 6 1406 16 HOH HOH . J 5 HOH A 7 1407 19 HOH HOH . J 5 HOH A 8 1408 14 HOH HOH . J 5 HOH A 9 1409 11 HOH HOH . J 5 HOH A 10 1410 9 HOH HOH . J 5 HOH A 11 1411 17 HOH HOH . J 5 HOH A 12 1412 6 HOH HOH . J 5 HOH A 13 1413 1 HOH HOH . J 5 HOH A 14 1414 15 HOH HOH . J 5 HOH A 15 1415 7 HOH HOH . J 5 HOH A 16 1416 8 HOH HOH . J 5 HOH A 17 1417 21 HOH HOH . J 5 HOH A 18 1418 20 HOH HOH . J 5 HOH A 19 1419 5 HOH HOH . J 5 HOH A 20 1420 18 HOH HOH . J 5 HOH A 21 1421 12 HOH HOH . J 5 HOH A 22 1422 10 HOH HOH . J 5 HOH A 23 1423 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PX4 . . . D 3 -38.578 -53.033 -52.267 1 114.55 ? O1 PX4 1303 A 1 HETATM 2 O O2 PX4 . . . D 3 -36.116 -53.356 -53.078 1 112.3 ? O2 PX4 1303 A 1 HETATM 3 P P1 PX4 . . . D 3 -37.502 -52.81 -53.295 1 132.05 ? P1 PX4 1303 A 1 HETATM 4 O O3 PX4 . . . D 3 -37.346 -51.238 -53.601 1 118.5 ? O3 PX4 1303 A 1 HETATM 5 C C1 PX4 . . . D 3 -36.808 -50.351 -52.581 1 125.68 ? C1 PX4 1303 A 1 HETATM 6 C C2 PX4 . . . D 3 -36.244 -49.118 -53.244 1 109.31 ? C2 PX4 1303 A 1 HETATM 7 N N1 PX4 . . . D 3 -34.915 -48.634 -52.697 1 131.84 ? N1 PX4 1303 A 1 HETATM 8 C C3 PX4 . . . D 3 -33.958 -49.773 -52.621 1 103.04 ? C3 PX4 1303 A 1 HETATM 9 C C4 PX4 . . . D 3 -34.345 -47.589 -53.591 1 124.98 ? C4 PX4 1303 A 1 HETATM 10 C C5 PX4 . . . D 3 -35.099 -48.061 -51.335 1 134.96 ? C5 PX4 1303 A 1 HETATM 11 O O4 PX4 . . . D 3 -38.04 -53.361 -54.704 1 103.31 ? O4 PX4 1303 A 1 HETATM 12 C C6 PX4 . . . D 3 -38.738 -54.633 -54.775 1 91.03 ? C6 PX4 1303 A 1 HETATM 13 C C7 PX4 . . . D 3 -38.54 -55.139 -56.185 1 77.28 ? C7 PX4 1303 A 1 HETATM 14 C C8 PX4 . . . D 3 -38.78 -54.085 -57.246 1 77.04 ? C8 PX4 1303 A 1 HETATM 15 O O5 PX4 . . . D 3 -38.001 -54.384 -58.427 1 86.49 ? O5 PX4 1303 A 1 HETATM 16 C C9 PX4 . . . D 3 -38.163 -53.566 -59.472 1 77.91 ? C9 PX4 1303 A 1 HETATM 17 O O6 PX4 . . . D 3 -39.195 -53.013 -59.741 1 81.51 ? O6 PX4 1303 A 1 HETATM 18 C C10 PX4 . . . D 3 -36.889 -53.366 -60.229 1 58.75 ? C10 PX4 1303 A 1 HETATM 19 C C11 PX4 . . . D 3 -37.04 -53.435 -61.704 1 46.49 ? C11 PX4 1303 A 1 HETATM 20 C C12 PX4 . . . D 3 -37.698 -52.207 -62.297 1 47.32 ? C12 PX4 1303 A 1 HETATM 21 C C13 PX4 . . . D 3 -37.445 -52.074 -63.772 1 57.38 ? C13 PX4 1303 A 1 HETATM 22 C C14 PX4 . . . D 3 -37.996 -50.821 -64.4 1 62.79 ? C14 PX4 1303 A 1 HETATM 23 C C15 PX4 . . . D 3 -39.5 -50.744 -64.424 1 63.52 ? C15 PX4 1303 A 1 HETATM 24 C C16 PX4 . . . D 3 -40.047 -50.25 -65.732 1 51.91 ? C16 PX4 1303 A 1 HETATM 25 C C17 PX4 . . . D 3 -41.524 -49.965 -65.724 1 58.83 ? C17 PX4 1303 A 1 HETATM 26 C C18 PX4 . . . D 3 -42.391 -51.135 -65.352 1 46.02 ? C18 PX4 1303 A 1 HETATM 27 C C19 PX4 . . . D 3 -43.752 -51.097 -66.006 1 44.8 ? C19 PX4 1303 A 1 HETATM 28 C C20 PX4 . . . D 3 -44.716 -52.13 -65.483 1 54.14 ? C20 PX4 1303 A 1 HETATM 29 C C21 PX4 . . . D 3 -46.054 -52.097 -66.172 1 56.85 ? C21 PX4 1303 A 1 HETATM 30 C C22 PX4 . . . D 3 -46.693 -50.738 -66.338 1 55.24 ? C22 PX4 1303 A 1 HETATM 31 O O7 PX4 . . . D 3 -37.198 -55.688 -56.261 1 90.12 ? O7 PX4 1303 A 1 HETATM 32 C C23 PX4 . . . D 3 -37.079 -57.022 -56.342 1 109.69 ? C23 PX4 1303 A 1 HETATM 33 O O8 PX4 . . . D 3 -36.779 -57.701 -55.39 1 111.16 ? O8 PX4 1303 A 1 HETATM 34 C C24 PX4 . . . D 3 -37.359 -57.524 -57.738 1 89.44 ? C24 PX4 1303 A 1 HETATM 35 C C25 PX4 . . . D 3 -36.127 -57.662 -58.591 1 71.86 ? C25 PX4 1303 A 1 HETATM 36 C C26 PX4 . . . D 3 -36.449 -58.061 -60.024 1 60.98 ? C26 PX4 1303 A 1 HETATM 37 C C27 PX4 . . . D 3 -36.422 -56.928 -61.026 1 62.35 ? C27 PX4 1303 A 1 HETATM 38 C C28 PX4 . . . D 3 -37.162 -57.211 -62.321 1 53.2 ? C28 PX4 1303 A 1 HETATM 39 C C29 PX4 . . . D 3 -36.817 -56.267 -63.455 1 76.47 ? C29 PX4 1303 A 1 HETATM 40 C C30 PX4 . . . D 3 -37.783 -56.278 -64.616 1 68.44 ? C30 PX4 1303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #