data_8DIV # _model_server_result.job_id 7c0nU7o2AjhEx_hfHUfA5w _model_server_result.datetime_utc '2024-11-23 02:06:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8div # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1304}' # _entry.id 8DIV # _exptl.entry_id 8DIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 678.94 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DIV _cell.length_a 124.578 _cell.length_b 124.578 _cell.length_c 190.927 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -124.578 -124.578 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -124.578 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -124.578 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C36 H73 N O8 P 1' _chem_comp.formula_weight 678.94 _chem_comp.id PX4 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PX4 sing 391 n n O1 H1P PX4 sing 392 n n O2 P1 PX4 doub 393 n n P1 O3 PX4 sing 394 n n P1 O4 PX4 sing 395 n n O3 C1 PX4 sing 396 n n C1 C2 PX4 sing 397 n n C1 H1 PX4 sing 398 n n C1 H2 PX4 sing 399 n n C2 N1 PX4 sing 400 n n C2 H3 PX4 sing 401 n n C2 H4 PX4 sing 402 n n N1 C3 PX4 sing 403 n n N1 C4 PX4 sing 404 n n N1 C5 PX4 sing 405 n n C3 H5 PX4 sing 406 n n C3 H6 PX4 sing 407 n n C3 H7 PX4 sing 408 n n C4 H8 PX4 sing 409 n n C4 H9 PX4 sing 410 n n C4 H10 PX4 sing 411 n n C5 H11 PX4 sing 412 n n C5 H12 PX4 sing 413 n n C5 H13 PX4 sing 414 n n O4 C6 PX4 sing 415 n n C6 C7 PX4 sing 416 n n C6 H14 PX4 sing 417 n n C6 H15 PX4 sing 418 n n C7 C8 PX4 sing 419 n n C7 O7 PX4 sing 420 n n C7 H16 PX4 sing 421 n n C8 O5 PX4 sing 422 n n C8 H17 PX4 sing 423 n n C8 H18 PX4 sing 424 n n O5 C9 PX4 sing 425 n n C9 O6 PX4 doub 426 n n C9 C10 PX4 sing 427 n n C10 C11 PX4 sing 428 n n C10 H19 PX4 sing 429 n n C10 H20 PX4 sing 430 n n C11 C12 PX4 sing 431 n n C11 H21 PX4 sing 432 n n C11 H22 PX4 sing 433 n n C12 C13 PX4 sing 434 n n C12 H23 PX4 sing 435 n n C12 H24 PX4 sing 436 n n C13 C14 PX4 sing 437 n n C13 H25 PX4 sing 438 n n C13 H26 PX4 sing 439 n n C14 C15 PX4 sing 440 n n C14 H27 PX4 sing 441 n n C14 H28 PX4 sing 442 n n C15 C16 PX4 sing 443 n n C15 H29 PX4 sing 444 n n C15 H30 PX4 sing 445 n n C16 C17 PX4 sing 446 n n C16 H31 PX4 sing 447 n n C16 H32 PX4 sing 448 n n C17 C18 PX4 sing 449 n n C17 H33 PX4 sing 450 n n C17 H34 PX4 sing 451 n n C18 C19 PX4 sing 452 n n C18 H35 PX4 sing 453 n n C18 H36 PX4 sing 454 n n C19 C20 PX4 sing 455 n n C19 H37 PX4 sing 456 n n C19 H38 PX4 sing 457 n n C20 C21 PX4 sing 458 n n C20 H39 PX4 sing 459 n n C20 H40 PX4 sing 460 n n C21 C22 PX4 sing 461 n n C21 H41 PX4 sing 462 n n C21 H42 PX4 sing 463 n n C22 H43 PX4 sing 464 n n C22 H44 PX4 sing 465 n n C22 H45 PX4 sing 466 n n O7 C23 PX4 sing 467 n n C23 O8 PX4 doub 468 n n C23 C24 PX4 sing 469 n n C24 C25 PX4 sing 470 n n C24 H46 PX4 sing 471 n n C24 H47 PX4 sing 472 n n C25 C26 PX4 sing 473 n n C25 H48 PX4 sing 474 n n C25 H49 PX4 sing 475 n n C26 C27 PX4 sing 476 n n C26 H50 PX4 sing 477 n n C26 H51 PX4 sing 478 n n C27 C28 PX4 sing 479 n n C27 H52 PX4 sing 480 n n C27 H53 PX4 sing 481 n n C28 C29 PX4 sing 482 n n C28 H54 PX4 sing 483 n n C28 H55 PX4 sing 484 n n C29 C30 PX4 sing 485 n n C29 H56 PX4 sing 486 n n C29 H57 PX4 sing 487 n n C30 C31 PX4 sing 488 n n C30 H58 PX4 sing 489 n n C30 H59 PX4 sing 490 n n C31 C32 PX4 sing 491 n n C31 H60 PX4 sing 492 n n C31 H61 PX4 sing 493 n n C32 C33 PX4 sing 494 n n C32 H62 PX4 sing 495 n n C32 H63 PX4 sing 496 n n C33 C34 PX4 sing 497 n n C33 H64 PX4 sing 498 n n C33 H65 PX4 sing 499 n n C34 C35 PX4 sing 500 n n C34 H66 PX4 sing 501 n n C34 H67 PX4 sing 502 n n C35 C36 PX4 sing 503 n n C35 H68 PX4 sing 504 n n C35 H69 PX4 sing 505 n n C36 H70 PX4 sing 506 n n C36 H71 PX4 sing 507 n n C36 H72 PX4 sing 508 n n # _atom_sites.entry_id 8DIV _atom_sites.fract_transf_matrix[1][1] 0.008027 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008027 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BGC A 1 1301 1301 BGC BGC . C 3 PX4 A 1 1302 1 PX4 PX4 . D 3 PX4 A 1 1303 2 PX4 PX4 . E 3 PX4 A 1 1304 3 PX4 PX4 . F 3 PX4 A 1 1305 4 PX4 PX4 . G 3 PX4 A 1 1306 5 PX4 PX4 . H 4 CPS A 1 1307 1 CPS CPS . I 4 CPS A 1 1308 2 CPS CPS . J 5 HOH A 1 1401 23 HOH HOH . J 5 HOH A 2 1402 4 HOH HOH . J 5 HOH A 3 1403 3 HOH HOH . J 5 HOH A 4 1404 22 HOH HOH . J 5 HOH A 5 1405 2 HOH HOH . J 5 HOH A 6 1406 16 HOH HOH . J 5 HOH A 7 1407 19 HOH HOH . J 5 HOH A 8 1408 14 HOH HOH . J 5 HOH A 9 1409 11 HOH HOH . J 5 HOH A 10 1410 9 HOH HOH . J 5 HOH A 11 1411 17 HOH HOH . J 5 HOH A 12 1412 6 HOH HOH . J 5 HOH A 13 1413 1 HOH HOH . J 5 HOH A 14 1414 15 HOH HOH . J 5 HOH A 15 1415 7 HOH HOH . J 5 HOH A 16 1416 8 HOH HOH . J 5 HOH A 17 1417 21 HOH HOH . J 5 HOH A 18 1418 20 HOH HOH . J 5 HOH A 19 1419 5 HOH HOH . J 5 HOH A 20 1420 18 HOH HOH . J 5 HOH A 21 1421 12 HOH HOH . J 5 HOH A 22 1422 10 HOH HOH . J 5 HOH A 23 1423 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PX4 . . . E 3 -34.689 -55.234 -89.47 1 95.84 ? O1 PX4 1304 A 1 HETATM 2 O O2 PX4 . . . E 3 -35.857 -57.431 -88.635 1 40.77 ? O2 PX4 1304 A 1 HETATM 3 P P1 PX4 . . . E 3 -35.916 -56.1 -89.345 1 105.26 ? P1 PX4 1304 A 1 HETATM 4 O O3 PX4 . . . E 3 -36.506 -56.297 -90.835 1 74.02 ? O3 PX4 1304 A 1 HETATM 5 C C1 PX4 . . . E 3 -36.461 -55.187 -91.79 1 78.44 ? C1 PX4 1304 A 1 HETATM 6 C C2 PX4 . . . E 3 -36.881 -55.626 -93.175 1 61.6 ? C2 PX4 1304 A 1 HETATM 7 N N1 PX4 . . . E 3 -36.893 -54.55 -94.247 1 99.82 ? N1 PX4 1304 A 1 HETATM 8 C C3 PX4 . . . E 3 -35.515 -54.031 -94.481 1 86.32 ? C3 PX4 1304 A 1 HETATM 9 C C4 PX4 . . . E 3 -37.407 -55.116 -95.524 1 101.97 ? C4 PX4 1304 A 1 HETATM 10 C C5 PX4 . . . E 3 -37.774 -53.416 -93.83 1 81.93 ? C5 PX4 1304 A 1 HETATM 11 O O4 PX4 . . . E 3 -36.985 -55.222 -88.527 1 62.11 ? O4 PX4 1304 A 1 HETATM 12 C C6 PX4 . . . E 3 -36.539 -54.513 -87.332 1 46.08 ? C6 PX4 1304 A 1 HETATM 13 C C7 PX4 . . . E 3 -37.152 -54.978 -86.023 1 30.52 ? C7 PX4 1304 A 1 HETATM 14 C C8 PX4 . . . E 3 -38.658 -54.808 -85.956 1 27.82 ? C8 PX4 1304 A 1 HETATM 15 O O5 PX4 . . . E 3 -39.104 -55.001 -84.592 1 33.7 ? O5 PX4 1304 A 1 HETATM 16 C C9 PX4 . . . E 3 -39.254 -56.263 -84.196 1 39.5 ? C9 PX4 1304 A 1 HETATM 17 O O6 PX4 . . . E 3 -39.693 -57.123 -84.918 1 47.1 ? O6 PX4 1304 A 1 HETATM 18 C C10 PX4 . . . E 3 -38.668 -56.517 -82.818 1 33.06 ? C10 PX4 1304 A 1 HETATM 19 C C11 PX4 . . . E 3 -39.136 -55.587 -81.74 1 30.97 ? C11 PX4 1304 A 1 HETATM 20 C C12 PX4 . . . E 3 -38.617 -55.962 -80.345 1 22.72 ? C12 PX4 1304 A 1 HETATM 21 C C13 PX4 . . . E 3 -38.902 -54.883 -79.32 1 29.29 ? C13 PX4 1304 A 1 HETATM 22 C C14 PX4 . . . E 3 -38.735 -55.249 -77.857 1 36.96 ? C14 PX4 1304 A 1 HETATM 23 C C15 PX4 . . . E 3 -39.21 -54.145 -76.928 1 31.98 ? C15 PX4 1304 A 1 HETATM 24 C C16 PX4 . . . E 3 -38.996 -54.392 -75.455 1 47.35 ? C16 PX4 1304 A 1 HETATM 25 C C17 PX4 . . . E 3 -40.231 -54.811 -74.703 1 63.02 ? C17 PX4 1304 A 1 HETATM 26 C C18 PX4 . . . E 3 -39.999 -55.044 -73.226 1 74.48 ? C18 PX4 1304 A 1 HETATM 27 C C19 PX4 . . . E 3 -39.979 -56.504 -72.804 1 85.75 ? C19 PX4 1304 A 1 HETATM 28 C C20 PX4 . . . E 3 -38.987 -57.374 -73.544 1 70.34 ? C20 PX4 1304 A 1 HETATM 29 C C21 PX4 . . . E 3 -38.796 -58.77 -73.002 1 57.21 ? C21 PX4 1304 A 1 HETATM 30 C C22 PX4 . . . E 3 -37.815 -59.554 -73.847 1 57.77 ? C22 PX4 1304 A 1 HETATM 31 O O7 PX4 . . . E 3 -36.757 -56.332 -85.634 1 60.59 ? O7 PX4 1304 A 1 HETATM 32 C C23 PX4 . . . E 3 -35.494 -56.566 -85.211 1 56.41 ? C23 PX4 1304 A 1 HETATM 33 O O8 PX4 . . . E 3 -34.584 -55.821 -85.453 1 56.34 ? O8 PX4 1304 A 1 HETATM 34 C C24 PX4 . . . E 3 -35.324 -57.812 -84.363 1 42.66 ? C24 PX4 1304 A 1 HETATM 35 C C25 PX4 . . . E 3 -34.436 -57.6 -83.179 1 34.17 ? C25 PX4 1304 A 1 HETATM 36 C C26 PX4 . . . E 3 -34.861 -58.358 -81.923 1 24.85 ? C26 PX4 1304 A 1 HETATM 37 C C27 PX4 . . . E 3 -34.626 -57.544 -80.66 1 61.16 ? C27 PX4 1304 A 1 HETATM 38 C C28 PX4 . . . E 3 -34.806 -58.242 -79.324 1 52.46 ? C28 PX4 1304 A 1 HETATM 39 C C29 PX4 . . . E 3 -34.968 -57.268 -78.161 1 39.87 ? C29 PX4 1304 A 1 HETATM 40 C C30 PX4 . . . E 3 -34.988 -57.896 -76.776 1 53.61 ? C30 PX4 1304 A 1 HETATM 41 C C31 PX4 . . . E 3 -35.677 -57.059 -75.7 1 68.59 ? C31 PX4 1304 A 1 HETATM 42 C C32 PX4 . . . E 3 -35.082 -55.681 -75.443 1 66.33 ? C32 PX4 1304 A 1 HETATM 43 C C33 PX4 . . . E 3 -34.258 -55.56 -74.172 1 79.54 ? C33 PX4 1304 A 1 HETATM 44 C C34 PX4 . . . E 3 -35.045 -55.562 -72.873 1 70.29 ? C34 PX4 1304 A 1 HETATM 45 C C35 PX4 . . . E 3 -35.549 -54.217 -72.395 1 84.7 ? C35 PX4 1304 A 1 HETATM 46 C C36 PX4 . . . E 3 -36.249 -54.251 -71.05 1 69.98 ? C36 PX4 1304 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 46 #