data_8DIX # _model_server_result.job_id Q4ipwUpJNgptWnrVIjeZaw _model_server_result.datetime_utc '2024-11-26 21:08:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dix # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1301}' # _entry.id 8DIX # _exptl.entry_id 8DIX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 678.94 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DIX _cell.length_a 126.058 _cell.length_b 126.058 _cell.length_c 192.445 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DIX _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -126.058 -126.058 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -126.058 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -126.058 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C36 H73 N O8 P 1' _chem_comp.formula_weight 678.94 _chem_comp.id PX4 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PX4 sing 262 n n O1 H1P PX4 sing 263 n n O2 P1 PX4 doub 264 n n P1 O3 PX4 sing 265 n n P1 O4 PX4 sing 266 n n O3 C1 PX4 sing 267 n n C1 C2 PX4 sing 268 n n C1 H1 PX4 sing 269 n n C1 H2 PX4 sing 270 n n C2 N1 PX4 sing 271 n n C2 H3 PX4 sing 272 n n C2 H4 PX4 sing 273 n n N1 C3 PX4 sing 274 n n N1 C4 PX4 sing 275 n n N1 C5 PX4 sing 276 n n C3 H5 PX4 sing 277 n n C3 H6 PX4 sing 278 n n C3 H7 PX4 sing 279 n n C4 H8 PX4 sing 280 n n C4 H9 PX4 sing 281 n n C4 H10 PX4 sing 282 n n C5 H11 PX4 sing 283 n n C5 H12 PX4 sing 284 n n C5 H13 PX4 sing 285 n n O4 C6 PX4 sing 286 n n C6 C7 PX4 sing 287 n n C6 H14 PX4 sing 288 n n C6 H15 PX4 sing 289 n n C7 C8 PX4 sing 290 n n C7 O7 PX4 sing 291 n n C7 H16 PX4 sing 292 n n C8 O5 PX4 sing 293 n n C8 H17 PX4 sing 294 n n C8 H18 PX4 sing 295 n n O5 C9 PX4 sing 296 n n C9 O6 PX4 doub 297 n n C9 C10 PX4 sing 298 n n C10 C11 PX4 sing 299 n n C10 H19 PX4 sing 300 n n C10 H20 PX4 sing 301 n n C11 C12 PX4 sing 302 n n C11 H21 PX4 sing 303 n n C11 H22 PX4 sing 304 n n C12 C13 PX4 sing 305 n n C12 H23 PX4 sing 306 n n C12 H24 PX4 sing 307 n n C13 C14 PX4 sing 308 n n C13 H25 PX4 sing 309 n n C13 H26 PX4 sing 310 n n C14 C15 PX4 sing 311 n n C14 H27 PX4 sing 312 n n C14 H28 PX4 sing 313 n n C15 C16 PX4 sing 314 n n C15 H29 PX4 sing 315 n n C15 H30 PX4 sing 316 n n C16 C17 PX4 sing 317 n n C16 H31 PX4 sing 318 n n C16 H32 PX4 sing 319 n n C17 C18 PX4 sing 320 n n C17 H33 PX4 sing 321 n n C17 H34 PX4 sing 322 n n C18 C19 PX4 sing 323 n n C18 H35 PX4 sing 324 n n C18 H36 PX4 sing 325 n n C19 C20 PX4 sing 326 n n C19 H37 PX4 sing 327 n n C19 H38 PX4 sing 328 n n C20 C21 PX4 sing 329 n n C20 H39 PX4 sing 330 n n C20 H40 PX4 sing 331 n n C21 C22 PX4 sing 332 n n C21 H41 PX4 sing 333 n n C21 H42 PX4 sing 334 n n C22 H43 PX4 sing 335 n n C22 H44 PX4 sing 336 n n C22 H45 PX4 sing 337 n n O7 C23 PX4 sing 338 n n C23 O8 PX4 doub 339 n n C23 C24 PX4 sing 340 n n C24 C25 PX4 sing 341 n n C24 H46 PX4 sing 342 n n C24 H47 PX4 sing 343 n n C25 C26 PX4 sing 344 n n C25 H48 PX4 sing 345 n n C25 H49 PX4 sing 346 n n C26 C27 PX4 sing 347 n n C26 H50 PX4 sing 348 n n C26 H51 PX4 sing 349 n n C27 C28 PX4 sing 350 n n C27 H52 PX4 sing 351 n n C27 H53 PX4 sing 352 n n C28 C29 PX4 sing 353 n n C28 H54 PX4 sing 354 n n C28 H55 PX4 sing 355 n n C29 C30 PX4 sing 356 n n C29 H56 PX4 sing 357 n n C29 H57 PX4 sing 358 n n C30 C31 PX4 sing 359 n n C30 H58 PX4 sing 360 n n C30 H59 PX4 sing 361 n n C31 C32 PX4 sing 362 n n C31 H60 PX4 sing 363 n n C31 H61 PX4 sing 364 n n C32 C33 PX4 sing 365 n n C32 H62 PX4 sing 366 n n C32 H63 PX4 sing 367 n n C33 C34 PX4 sing 368 n n C33 H64 PX4 sing 369 n n C33 H65 PX4 sing 370 n n C34 C35 PX4 sing 371 n n C34 H66 PX4 sing 372 n n C34 H67 PX4 sing 373 n n C35 C36 PX4 sing 374 n n C35 H68 PX4 sing 375 n n C35 H69 PX4 sing 376 n n C36 H70 PX4 sing 377 n n C36 H71 PX4 sing 378 n n C36 H72 PX4 sing 379 n n # _atom_sites.entry_id 8DIX _atom_sites.fract_transf_matrix[1][1] 0.007933 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007933 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PX4 A 1 1301 1301 PX4 PX4 . C 2 PX4 A 1 1302 1401 PX4 PX4 . D 2 PX4 A 1 1303 1501 PX4 PX4 . E 2 PX4 A 1 1304 1601 PX4 PX4 . F 2 PX4 A 1 1305 1701 PX4 PX4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PX4 . . . B 2 -36.511 -58.256 -90.468 1 94.75 ? O1 PX4 1301 A 1 HETATM 2 O O2 PX4 . . . B 2 -35.544 -55.841 -90.545 1 94.44 ? O2 PX4 1301 A 1 HETATM 3 P P1 PX4 . . . B 2 -36.721 -56.767 -90.411 1 102.77 ? P1 PX4 1301 A 1 HETATM 4 O O3 PX4 . . . B 2 -37.79 -56.325 -91.531 1 90.99 ? O3 PX4 1301 A 1 HETATM 5 C C1 PX4 . . . B 2 -37.477 -56.523 -92.946 1 82.84 ? C1 PX4 1301 A 1 HETATM 6 C C2 PX4 . . . B 2 -38.457 -55.77 -93.815 1 79.98 ? C2 PX4 1301 A 1 HETATM 7 N N1 PX4 . . . B 2 -37.97 -54.462 -94.413 1 86.13 ? N1 PX4 1301 A 1 HETATM 8 C C3 PX4 . . . B 2 -37.186 -53.696 -93.407 1 87.87 ? C3 PX4 1301 A 1 HETATM 9 C C4 PX4 . . . B 2 -37.113 -54.729 -95.6 1 89.73 ? C4 PX4 1301 A 1 HETATM 10 C C5 PX4 . . . B 2 -39.132 -53.632 -94.839 1 76.18 ? C5 PX4 1301 A 1 HETATM 11 O O4 PX4 . . . B 2 -37.406 -56.421 -88.995 1 76.98 ? O4 PX4 1301 A 1 HETATM 12 C C6 PX4 . . . B 2 -38.086 -57.471 -88.246 1 61.8 ? C6 PX4 1301 A 1 HETATM 13 C C7 PX4 . . . B 2 -37.927 -57.24 -86.757 1 58.72 ? C7 PX4 1301 A 1 HETATM 14 C C8 PX4 . . . B 2 -36.582 -56.655 -86.38 1 68.34 ? C8 PX4 1301 A 1 HETATM 15 O O5 PX4 . . . B 2 -36.226 -57.103 -85.051 1 67.32 ? O5 PX4 1301 A 1 HETATM 16 C C9 PX4 . . . B 2 -35.461 -58.192 -84.981 1 59.1 ? C9 PX4 1301 A 1 HETATM 17 O O6 PX4 . . . B 2 -34.854 -58.636 -85.92 1 58.52 ? O6 PX4 1301 A 1 HETATM 18 C C10 PX4 . . . B 2 -35.495 -58.836 -83.618 1 48.08 ? C10 PX4 1301 A 1 HETATM 19 C C11 PX4 . . . B 2 -35.271 -57.895 -82.473 1 55.37 ? C11 PX4 1301 A 1 HETATM 20 C C12 PX4 . . . B 2 -35.121 -58.634 -81.154 1 54.47 ? C12 PX4 1301 A 1 HETATM 21 C C13 PX4 . . . B 2 -35.398 -57.813 -79.918 1 50.35 ? C13 PX4 1301 A 1 HETATM 22 C C14 PX4 . . . B 2 -35.453 -58.644 -78.66 1 47.63 ? C14 PX4 1301 A 1 HETATM 23 C C15 PX4 . . . B 2 -36.347 -58.099 -77.574 1 49.02 ? C15 PX4 1301 A 1 HETATM 24 C C16 PX4 . . . B 2 -36.817 -59.158 -76.605 1 55.1 ? C16 PX4 1301 A 1 HETATM 25 C C17 PX4 . . . B 2 -37.874 -58.711 -75.623 1 53.49 ? C17 PX4 1301 A 1 HETATM 26 C C18 PX4 . . . B 2 -38.654 -59.86 -75.023 1 43.26 ? C18 PX4 1301 A 1 HETATM 27 C C19 PX4 . . . B 2 -39.732 -59.463 -74.046 1 37.67 ? C19 PX4 1301 A 1 HETATM 28 C C20 PX4 . . . B 2 -39.242 -59.226 -72.64 1 50.63 ? C20 PX4 1301 A 1 HETATM 29 O O7 PX4 . . . B 2 -38.98 -56.371 -86.248 1 41.4 ? O7 PX4 1301 A 1 HETATM 30 C C23 PX4 . . . B 2 -39.594 -56.723 -85.101 1 45.69 ? C23 PX4 1301 A 1 HETATM 31 O O8 PX4 . . . B 2 -40.534 -57.475 -85.101 1 42.69 ? O8 PX4 1301 A 1 HETATM 32 C C24 PX4 . . . B 2 -39.007 -56.127 -83.841 1 47.12 ? C24 PX4 1301 A 1 HETATM 33 C C25 PX4 . . . B 2 -39.798 -56.436 -82.597 1 34.55 ? C25 PX4 1301 A 1 HETATM 34 C C26 PX4 . . . B 2 -39.076 -56.034 -81.316 1 33.59 ? C26 PX4 1301 A 1 HETATM 35 C C27 PX4 . . . B 2 -39.942 -56.054 -80.072 1 31.72 ? C27 PX4 1301 A 1 HETATM 36 C C28 PX4 . . . B 2 -39.226 -55.687 -78.787 1 27.82 ? C28 PX4 1301 A 1 HETATM 37 C C29 PX4 . . . B 2 -40.124 -55.071 -77.739 1 25.22 ? C29 PX4 1301 A 1 HETATM 38 C C30 PX4 . . . B 2 -40.21 -55.823 -76.434 1 33.04 ? C30 PX4 1301 A 1 HETATM 39 C C31 PX4 . . . B 2 -41.055 -55.123 -75.395 1 39.58 ? C31 PX4 1301 A 1 HETATM 40 C C32 PX4 . . . B 2 -41.09 -55.787 -74.036 1 47.2 ? C32 PX4 1301 A 1 HETATM 41 C C33 PX4 . . . B 2 -41.67 -54.914 -72.944 1 56.17 ? C33 PX4 1301 A 1 HETATM 42 C C34 PX4 . . . B 2 -41.644 -55.52 -71.559 1 66.66 ? C34 PX4 1301 A 1 HETATM 43 C C35 PX4 . . . B 2 -41.862 -54.525 -70.442 1 60.39 ? C35 PX4 1301 A 1 HETATM 44 C C36 PX4 . . . B 2 -40.782 -53.467 -70.355 1 51.59 ? C36 PX4 1301 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 44 #