data_8DIX # _model_server_result.job_id e5rJrhL86FXHl5I5o1FULg _model_server_result.datetime_utc '2024-11-23 05:27:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dix # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1303}' # _entry.id 8DIX # _exptl.entry_id 8DIX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 678.94 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DIX _cell.length_a 126.058 _cell.length_b 126.058 _cell.length_c 192.445 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DIX _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -126.058 -126.058 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -126.058 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -126.058 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C36 H73 N O8 P 1' _chem_comp.formula_weight 678.94 _chem_comp.id PX4 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PX4 sing 262 n n O1 H1P PX4 sing 263 n n O2 P1 PX4 doub 264 n n P1 O3 PX4 sing 265 n n P1 O4 PX4 sing 266 n n O3 C1 PX4 sing 267 n n C1 C2 PX4 sing 268 n n C1 H1 PX4 sing 269 n n C1 H2 PX4 sing 270 n n C2 N1 PX4 sing 271 n n C2 H3 PX4 sing 272 n n C2 H4 PX4 sing 273 n n N1 C3 PX4 sing 274 n n N1 C4 PX4 sing 275 n n N1 C5 PX4 sing 276 n n C3 H5 PX4 sing 277 n n C3 H6 PX4 sing 278 n n C3 H7 PX4 sing 279 n n C4 H8 PX4 sing 280 n n C4 H9 PX4 sing 281 n n C4 H10 PX4 sing 282 n n C5 H11 PX4 sing 283 n n C5 H12 PX4 sing 284 n n C5 H13 PX4 sing 285 n n O4 C6 PX4 sing 286 n n C6 C7 PX4 sing 287 n n C6 H14 PX4 sing 288 n n C6 H15 PX4 sing 289 n n C7 C8 PX4 sing 290 n n C7 O7 PX4 sing 291 n n C7 H16 PX4 sing 292 n n C8 O5 PX4 sing 293 n n C8 H17 PX4 sing 294 n n C8 H18 PX4 sing 295 n n O5 C9 PX4 sing 296 n n C9 O6 PX4 doub 297 n n C9 C10 PX4 sing 298 n n C10 C11 PX4 sing 299 n n C10 H19 PX4 sing 300 n n C10 H20 PX4 sing 301 n n C11 C12 PX4 sing 302 n n C11 H21 PX4 sing 303 n n C11 H22 PX4 sing 304 n n C12 C13 PX4 sing 305 n n C12 H23 PX4 sing 306 n n C12 H24 PX4 sing 307 n n C13 C14 PX4 sing 308 n n C13 H25 PX4 sing 309 n n C13 H26 PX4 sing 310 n n C14 C15 PX4 sing 311 n n C14 H27 PX4 sing 312 n n C14 H28 PX4 sing 313 n n C15 C16 PX4 sing 314 n n C15 H29 PX4 sing 315 n n C15 H30 PX4 sing 316 n n C16 C17 PX4 sing 317 n n C16 H31 PX4 sing 318 n n C16 H32 PX4 sing 319 n n C17 C18 PX4 sing 320 n n C17 H33 PX4 sing 321 n n C17 H34 PX4 sing 322 n n C18 C19 PX4 sing 323 n n C18 H35 PX4 sing 324 n n C18 H36 PX4 sing 325 n n C19 C20 PX4 sing 326 n n C19 H37 PX4 sing 327 n n C19 H38 PX4 sing 328 n n C20 C21 PX4 sing 329 n n C20 H39 PX4 sing 330 n n C20 H40 PX4 sing 331 n n C21 C22 PX4 sing 332 n n C21 H41 PX4 sing 333 n n C21 H42 PX4 sing 334 n n C22 H43 PX4 sing 335 n n C22 H44 PX4 sing 336 n n C22 H45 PX4 sing 337 n n O7 C23 PX4 sing 338 n n C23 O8 PX4 doub 339 n n C23 C24 PX4 sing 340 n n C24 C25 PX4 sing 341 n n C24 H46 PX4 sing 342 n n C24 H47 PX4 sing 343 n n C25 C26 PX4 sing 344 n n C25 H48 PX4 sing 345 n n C25 H49 PX4 sing 346 n n C26 C27 PX4 sing 347 n n C26 H50 PX4 sing 348 n n C26 H51 PX4 sing 349 n n C27 C28 PX4 sing 350 n n C27 H52 PX4 sing 351 n n C27 H53 PX4 sing 352 n n C28 C29 PX4 sing 353 n n C28 H54 PX4 sing 354 n n C28 H55 PX4 sing 355 n n C29 C30 PX4 sing 356 n n C29 H56 PX4 sing 357 n n C29 H57 PX4 sing 358 n n C30 C31 PX4 sing 359 n n C30 H58 PX4 sing 360 n n C30 H59 PX4 sing 361 n n C31 C32 PX4 sing 362 n n C31 H60 PX4 sing 363 n n C31 H61 PX4 sing 364 n n C32 C33 PX4 sing 365 n n C32 H62 PX4 sing 366 n n C32 H63 PX4 sing 367 n n C33 C34 PX4 sing 368 n n C33 H64 PX4 sing 369 n n C33 H65 PX4 sing 370 n n C34 C35 PX4 sing 371 n n C34 H66 PX4 sing 372 n n C34 H67 PX4 sing 373 n n C35 C36 PX4 sing 374 n n C35 H68 PX4 sing 375 n n C35 H69 PX4 sing 376 n n C36 H70 PX4 sing 377 n n C36 H71 PX4 sing 378 n n C36 H72 PX4 sing 379 n n # _atom_sites.entry_id 8DIX _atom_sites.fract_transf_matrix[1][1] 0.007933 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007933 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PX4 A 1 1301 1301 PX4 PX4 . C 2 PX4 A 1 1302 1401 PX4 PX4 . D 2 PX4 A 1 1303 1501 PX4 PX4 . E 2 PX4 A 1 1304 1601 PX4 PX4 . F 2 PX4 A 1 1305 1701 PX4 PX4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PX4 . . . D 2 -37.42 -77.471 -88.826 1 70.86 ? O1 PX4 1303 A 1 HETATM 2 O O2 PX4 . . . D 2 -34.857 -77.554 -88.458 1 80.34 ? O2 PX4 1303 A 1 HETATM 3 P P1 PX4 . . . D 2 -36.131 -76.757 -88.52 1 74.74 ? P1 PX4 1303 A 1 HETATM 4 O O3 PX4 . . . D 2 -35.904 -75.603 -89.616 1 78.47 ? O3 PX4 1303 A 1 HETATM 5 C C1 PX4 . . . D 2 -34.883 -75.79 -90.639 1 78.01 ? C1 PX4 1303 A 1 HETATM 6 C C2 PX4 . . . D 2 -34.834 -74.605 -91.572 1 85.95 ? C2 PX4 1303 A 1 HETATM 7 N N1 PX4 . . . D 2 -33.627 -74.538 -92.489 1 90.13 ? N1 PX4 1303 A 1 HETATM 8 C C3 PX4 . . . D 2 -33.742 -73.371 -93.406 1 75.44 ? C3 PX4 1303 A 1 HETATM 9 C C4 PX4 . . . D 2 -32.389 -74.392 -91.674 1 90.41 ? C4 PX4 1303 A 1 HETATM 10 C C5 PX4 . . . D 2 -33.529 -75.781 -93.3 1 81.53 ? C5 PX4 1303 A 1 HETATM 11 O O4 PX4 . . . D 2 -36.257 -75.968 -87.121 1 56.43 ? O4 PX4 1303 A 1 HETATM 12 C C6 PX4 . . . D 2 -37.567 -75.637 -86.573 1 47.52 ? C6 PX4 1303 A 1 HETATM 13 C C7 PX4 . . . D 2 -37.572 -75.983 -85.097 1 48.44 ? C7 PX4 1303 A 1 HETATM 14 C C8 PX4 . . . D 2 -36.705 -77.183 -84.772 1 50.31 ? C8 PX4 1303 A 1 HETATM 15 O O5 PX4 . . . D 2 -37.085 -77.75 -83.497 1 55.86 ? O5 PX4 1303 A 1 HETATM 16 C C9 PX4 . . . D 2 -36.467 -77.291 -82.408 1 51.69 ? C9 PX4 1303 A 1 HETATM 17 O O6 PX4 . . . D 2 -35.684 -76.377 -82.422 1 51.84 ? O6 PX4 1303 A 1 HETATM 18 C C10 PX4 . . . D 2 -36.86 -78.076 -81.181 1 37.87 ? C10 PX4 1303 A 1 HETATM 19 C C11 PX4 . . . D 2 -36.152 -77.65 -79.928 1 35.06 ? C11 PX4 1303 A 1 HETATM 20 C C12 PX4 . . . D 2 -36.665 -78.369 -78.689 1 33.48 ? C12 PX4 1303 A 1 HETATM 21 C C13 PX4 . . . D 2 -36.09 -77.861 -77.386 1 31.57 ? C13 PX4 1303 A 1 HETATM 22 C C14 PX4 . . . D 2 -36.82 -78.337 -76.15 1 30.2 ? C14 PX4 1303 A 1 HETATM 23 C C15 PX4 . . . D 2 -36.399 -77.648 -74.872 1 31.6 ? C15 PX4 1303 A 1 HETATM 24 C C16 PX4 . . . D 2 -37.333 -77.863 -73.703 1 29.53 ? C16 PX4 1303 A 1 HETATM 25 C C17 PX4 . . . D 2 -37.197 -79.192 -73.005 1 27.51 ? C17 PX4 1303 A 1 HETATM 26 C C18 PX4 . . . D 2 -38.296 -79.482 -72.011 1 28.4 ? C18 PX4 1303 A 1 HETATM 27 C C19 PX4 . . . D 2 -38.003 -80.648 -71.101 1 35.11 ? C19 PX4 1303 A 1 HETATM 28 C C20 PX4 . . . D 2 -39.194 -81.176 -70.336 1 40.91 ? C20 PX4 1303 A 1 HETATM 29 C C21 PX4 . . . D 2 -39.862 -82.345 -71.015 1 38.82 ? C21 PX4 1303 A 1 HETATM 30 C C22 PX4 . . . D 2 -40.964 -83.002 -70.22 1 36.07 ? C22 PX4 1303 A 1 HETATM 31 O O7 PX4 . . . D 2 -37.253 -74.851 -84.23 1 56.14 ? O7 PX4 1303 A 1 HETATM 32 C C23 PX4 . . . D 2 -38.243 -74.008 -83.875 1 43.7 ? C23 PX4 1303 A 1 HETATM 33 O O8 PX4 . . . D 2 -39.224 -73.841 -84.553 1 37.24 ? O8 PX4 1303 A 1 HETATM 34 C C24 PX4 . . . D 2 -38.049 -73.367 -82.516 1 38.75 ? C24 PX4 1303 A 1 HETATM 35 C C25 PX4 . . . D 2 -38.743 -74.118 -81.408 1 36.86 ? C25 PX4 1303 A 1 HETATM 36 C C26 PX4 . . . D 2 -38.734 -73.407 -80.056 1 34.21 ? C26 PX4 1303 A 1 HETATM 37 C C27 PX4 . . . D 2 -39.18 -74.305 -78.917 1 31.58 ? C27 PX4 1303 A 1 HETATM 38 C C28 PX4 . . . D 2 -39.279 -73.677 -77.54 1 27.25 ? C28 PX4 1303 A 1 HETATM 39 C C29 PX4 . . . D 2 -39.377 -74.716 -76.443 1 34.98 ? C29 PX4 1303 A 1 HETATM 40 C C30 PX4 . . . D 2 -39.746 -74.23 -75.054 1 32.69 ? C30 PX4 1303 A 1 HETATM 41 C C31 PX4 . . . D 2 -39.817 -75.369 -74.057 1 29.67 ? C31 PX4 1303 A 1 HETATM 42 C C32 PX4 . . . D 2 -40.343 -75.048 -72.678 1 23.64 ? C32 PX4 1303 A 1 HETATM 43 C C33 PX4 . . . D 2 -40.396 -76.267 -71.779 1 22 ? C33 PX4 1303 A 1 HETATM 44 C C34 PX4 . . . D 2 -40.867 -76.015 -70.367 1 24.75 ? C34 PX4 1303 A 1 HETATM 45 C C35 PX4 . . . D 2 -40.883 -77.257 -69.503 1 28.61 ? C35 PX4 1303 A 1 HETATM 46 C C36 PX4 . . . D 2 -41.347 -77.025 -68.081 1 21.35 ? C36 PX4 1303 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 643 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 46 #