data_8DJ3 # _model_server_result.job_id hs_Vd7hGXDazMknJJUNWQg _model_server_result.datetime_utc '2024-11-29 21:46:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dj3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8DJ3 # _exptl.entry_id 8DJ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.579 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[(2-{[(3s,5s,7s)-adamantan-1-yl]sulfamoyl}phenyl)sulfanyl]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8DJ3 _cell.length_a 88.958 _cell.length_b 88.958 _cell.length_c 183.411 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DJ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H25 N O4 S2' _chem_comp.formula_weight 443.579 _chem_comp.id SE1 _chem_comp.mon_nstd_flag . _chem_comp.name '2-[(2-{[(3s,5s,7s)-adamantan-1-yl]sulfamoyl}phenyl)sulfanyl]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O30 C28 SE1 doub 277 n n C22 C20 SE1 sing 278 n n C22 C23 SE1 sing 279 n n O29 C28 SE1 sing 280 n n C28 C04 SE1 sing 281 n n C20 C19 SE1 sing 282 n n C20 C21 SE1 sing 283 n n C19 C18 SE1 sing 284 n n C23 C25 SE1 sing 285 n n C23 C24 SE1 sing 286 n n C13 C12 SE1 doub 287 n y C13 C08 SE1 sing 288 n y C12 C11 SE1 sing 289 n y C21 C16 SE1 sing 290 n n C04 C03 SE1 doub 291 n y C04 C05 SE1 sing 292 n y C03 C02 SE1 sing 293 n y C25 C18 SE1 sing 294 n n S07 C08 SE1 sing 295 n n S07 C05 SE1 sing 296 n n C24 C16 SE1 sing 297 n n C08 C09 SE1 doub 298 n y C11 C10 SE1 doub 299 n y C18 C17 SE1 sing 300 n n C05 C06 SE1 doub 301 n y C16 C17 SE1 sing 302 n n C16 N15 SE1 sing 303 n n C02 C01 SE1 doub 304 n y C09 C10 SE1 sing 305 n y C09 S14 SE1 sing 306 n n N15 S14 SE1 sing 307 n n C06 C01 SE1 sing 308 n y S14 O26 SE1 doub 309 n n S14 O27 SE1 doub 310 n n C01 H011 SE1 sing 311 n n C02 H021 SE1 sing 312 n n C03 H031 SE1 sing 313 n n C06 H061 SE1 sing 314 n n C10 H101 SE1 sing 315 n n C11 H111 SE1 sing 316 n n C12 H121 SE1 sing 317 n n C13 H131 SE1 sing 318 n n C17 H171 SE1 sing 319 n n C17 H172 SE1 sing 320 n n C18 H181 SE1 sing 321 n n C19 H191 SE1 sing 322 n n C19 H192 SE1 sing 323 n n C20 H201 SE1 sing 324 n n C21 H211 SE1 sing 325 n n C21 H212 SE1 sing 326 n n C22 H221 SE1 sing 327 n n C22 H222 SE1 sing 328 n n C23 H231 SE1 sing 329 n n C24 H242 SE1 sing 330 n n C24 H241 SE1 sing 331 n n C25 H251 SE1 sing 332 n n C25 H252 SE1 sing 333 n n N15 H151 SE1 sing 334 n n O29 H1 SE1 sing 335 n n # _atom_sites.entry_id 8DJ3 _atom_sites.fract_transf_matrix[1][1] 0.011241 _atom_sites.fract_transf_matrix[1][2] 0.00649 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SE1 A 1 401 401 SE1 JFD . D 3 HOH A 1 501 28 HOH HOH . D 3 HOH A 2 502 38 HOH HOH . D 3 HOH A 3 503 34 HOH HOH . D 3 HOH A 4 504 21 HOH HOH . D 3 HOH A 5 505 36 HOH HOH . E 3 HOH B 1 401 41 HOH HOH . E 3 HOH B 2 402 40 HOH HOH . E 3 HOH B 3 403 3 HOH HOH . E 3 HOH B 4 404 12 HOH HOH . E 3 HOH B 5 405 14 HOH HOH . E 3 HOH B 6 406 4 HOH HOH . E 3 HOH B 7 407 27 HOH HOH . E 3 HOH B 8 408 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 SE1 . . . C 2 -27.739 16.642 0.086 1 158.57 ? C01 SE1 401 A 1 HETATM 2 C C02 SE1 . . . C 2 -26.869 16.839 -0.974 1 140.8 ? C02 SE1 401 A 1 HETATM 3 C C03 SE1 . . . C 2 -26.954 16.137 -2.153 1 132.45 ? C03 SE1 401 A 1 HETATM 4 C C04 SE1 . . . C 2 -27.903 15.207 -2.321 1 153.22 ? C04 SE1 401 A 1 HETATM 5 C C05 SE1 . . . C 2 -28.761 14.98 -1.281 1 185.77 ? C05 SE1 401 A 1 HETATM 6 C C06 SE1 . . . C 2 -28.72 15.682 -0.088 1 163.12 ? C06 SE1 401 A 1 HETATM 7 C C08 SE1 . . . C 2 -31.332 14.851 -1.524 1 230.18 ? C08 SE1 401 A 1 HETATM 8 C C09 SE1 . . . C 2 -32.185 14.812 -0.546 1 277.84 ? C09 SE1 401 A 1 HETATM 9 C C10 SE1 . . . C 2 -33.26 15.686 -0.454 1 273.83 ? C10 SE1 401 A 1 HETATM 10 C C11 SE1 . . . C 2 -33.397 16.697 -1.388 1 203.59 ? C11 SE1 401 A 1 HETATM 11 C C12 SE1 . . . C 2 -32.45 16.738 -2.374 1 194.66 ? C12 SE1 401 A 1 HETATM 12 C C13 SE1 . . . C 2 -31.43 15.825 -2.382 1 182.37 ? C13 SE1 401 A 1 HETATM 13 C C16 SE1 . . . C 2 -32.615 11.176 -1.108 1 334.22 ? C16 SE1 401 A 1 HETATM 14 C C17 SE1 . . . C 2 -33.944 10.753 -0.367 1 323.08 ? C17 SE1 401 A 1 HETATM 15 C C18 SE1 . . . C 2 -34.972 10.002 -1.348 1 383.95 ? C18 SE1 401 A 1 HETATM 16 C C19 SE1 . . . C 2 -35.285 10.905 -2.568 1 469.27 ? C19 SE1 401 A 1 HETATM 17 C C20 SE1 . . . C 2 -34.022 11.336 -3.34 1 344.69 ? C20 SE1 401 A 1 HETATM 18 C C21 SE1 . . . C 2 -32.982 12.076 -2.343 1 320 ? C21 SE1 401 A 1 HETATM 19 C C22 SE1 . . . C 2 -33.112 10.094 -3.741 1 343.77 ? C22 SE1 401 A 1 HETATM 20 C C23 SE1 . . . C 2 -32.71 9.254 -2.481 1 335.43 ? C23 SE1 401 A 1 HETATM 21 C C24 SE1 . . . C 2 -31.951 10.003 -1.562 1 320.88 ? C24 SE1 401 A 1 HETATM 22 C C25 SE1 . . . C 2 -34.069 8.761 -1.732 1 373.73 ? C25 SE1 401 A 1 HETATM 23 C C28 SE1 . . . C 2 -28.033 14.388 -3.604 1 148.11 ? C28 SE1 401 A 1 HETATM 24 N N15 SE1 . . . C 2 -31.692 11.974 -0.147 1 302.45 ? N15 SE1 401 A 1 HETATM 25 O O26 SE1 . . . C 2 -33.254 13.343 1.585 1 319.9 ? O26 SE1 401 A 1 HETATM 26 O O27 SE1 . . . C 2 -31.075 13.74 1.682 1 245.38 ? O27 SE1 401 A 1 HETATM 27 O O29 SE1 . . . C 2 -27.435 13.236 -3.716 1 142.29 ? O29 SE1 401 A 1 HETATM 28 O O30 SE1 . . . C 2 -28.728 14.811 -4.54 1 146.53 -1 O30 SE1 401 A 1 HETATM 29 S S07 SE1 . . . C 2 -29.946 13.743 -1.696 1 202.94 ? S07 SE1 401 A 1 HETATM 30 S S14 SE1 . . . C 2 -32.063 13.451 0.688 1 290.81 ? S14 SE1 401 A 1 HETATM 31 H H011 SE1 . . . C 2 -27.649 17.203 0.995 1 190.28 ? H011 SE1 401 A 1 HETATM 32 H H021 SE1 . . . C 2 -26.067 17.574 -0.856 1 168.96 ? H021 SE1 401 A 1 HETATM 33 H H031 SE1 . . . C 2 -26.302 16.298 -2.965 1 158.94 ? H031 SE1 401 A 1 HETATM 34 H H061 SE1 . . . C 2 -29.438 15.471 0.708 1 195.75 ? H061 SE1 401 A 1 HETATM 35 H H101 SE1 . . . C 2 -33.955 15.572 0.357 1 328.6 ? H101 SE1 401 A 1 HETATM 36 H H111 SE1 . . . C 2 -34.21 17.438 -1.365 1 244.31 ? H111 SE1 401 A 1 HETATM 37 H H121 SE1 . . . C 2 -32.488 17.491 -3.157 1 233.59 ? H121 SE1 401 A 1 HETATM 38 H H131 SE1 . . . C 2 -30.689 15.764 -3.105 1 218.85 ? H131 SE1 401 A 1 HETATM 39 H H171 SE1 . . . C 2 -33.722 10.125 0.557 1 387.7 ? H171 SE1 401 A 1 HETATM 40 H H172 SE1 . . . C 2 -34.484 11.694 -0.002 1 387.7 ? H172 SE1 401 A 1 HETATM 41 H H181 SE1 . . . C 2 -35.862 9.694 -0.822 1 460.74 ? H181 SE1 401 A 1 HETATM 42 H H191 SE1 . . . C 2 -35.959 10.379 -3.243 1 563.12 ? H191 SE1 401 A 1 HETATM 43 H H192 SE1 . . . C 2 -35.79 11.816 -2.195 1 563.12 ? H192 SE1 401 A 1 HETATM 44 H H201 SE1 . . . C 2 -34.252 11.958 -4.202 1 413.63 ? H201 SE1 401 A 1 HETATM 45 H H211 SE1 . . . C 2 -33.466 12.975 -1.992 1 384 ? H211 SE1 401 A 1 HETATM 46 H H212 SE1 . . . C 2 -32.097 12.386 -2.858 1 384 ? H212 SE1 401 A 1 HETATM 47 H H221 SE1 . . . C 2 -32.218 10.421 -4.295 1 412.52 ? H221 SE1 401 A 1 HETATM 48 H H222 SE1 . . . C 2 -33.694 9.466 -4.432 1 412.52 ? H222 SE1 401 A 1 HETATM 49 H H231 SE1 . . . C 2 -32.17 8.344 -2.826 1 402.51 ? H231 SE1 401 A 1 HETATM 50 H H242 SE1 . . . C 2 -31 10.289 -2.027 1 385.05 ? H242 SE1 401 A 1 HETATM 51 H H241 SE1 . . . C 2 -31.665 9.389 -0.698 1 385.05 ? H241 SE1 401 A 1 HETATM 52 H H251 SE1 . . . C 2 -33.847 8.157 -0.896 1 448.48 ? H251 SE1 401 A 1 HETATM 53 H H252 SE1 . . . C 2 -34.662 8.109 -2.447 1 448.48 ? H252 SE1 401 A 1 HETATM 54 H H151 SE1 . . . C 2 -30.706 11.835 -0.23 1 362.94 ? H151 SE1 401 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 54 #