data_8DJ7 # _model_server_result.job_id 3iyHYVwcMyN0zfRjeXg9_A _model_server_result.datetime_utc '2024-11-05 00:16:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dj7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 8DJ7 # _exptl.entry_id 8DJ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.81 _cell.angle_gamma 90 _cell.entry_id 8DJ7 _cell.length_a 206.371 _cell.length_b 89.037 _cell.length_c 56.191 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DJ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 3 5 4 NAG MAN C1 O1 . O2 HO2 . sing 5 ? 3 6 3 MAN BMA C1 O1 . O6 HO6 . sing 6 ? 3 7 6 NAG MAN C1 O1 . O2 HO2 . sing 7 ? 3 8 1 FUC NAG C1 O1 . O6 HO6 . sing 8 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 9 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 10 ? 4 4 3 MAN BMA C1 O1 . O6 HO6 . sing 11 ? 4 5 4 NAG MAN C1 O1 . O2 HO2 . sing 12 ? 4 6 5 GAL NAG C1 O1 . O4 HO4 . sing 13 ? 4 7 3 MAN BMA C1 O1 . O3 HO3 . sing 14 ? 4 8 7 NAG MAN C1 O1 . O2 HO2 . sing 15 ? 4 9 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n D NAG 1 D 1 NAG B 501 NAG 3 n D NAG 2 D 2 NAG B 502 NAG 3 n D BMA 3 D 3 BMA B 503 BMA 3 n D MAN 4 D 4 MAN B 506 MAN 3 n D NAG 5 D 5 NAG B 507 NAG 3 n D MAN 6 D 6 MAN B 504 MAN 3 n D NAG 7 D 7 NAG B 505 NAG 3 n D FUC 8 D 8 FUC B 508 FUC 4 n E NAG 1 E 1 NAG A 501 NAG 4 n E NAG 2 E 2 NAG A 502 NAG 4 n E BMA 3 E 3 BMA A 503 BMA 4 n E MAN 4 E 4 MAN A 504 MAN 4 n E NAG 5 E 5 NAG A 505 NAG 4 n E GAL 6 E 6 GAL A 509 GAL 4 n E MAN 7 E 7 MAN A 506 MAN 4 n E NAG 8 E 8 NAG A 507 NAG 4 n E FUC 9 E 9 FUC A 508 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 33 B CYS 261 1_555 A SG CYS 93 B CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 139 B CYS 367 1_555 A SG CYS 197 B CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 33 A CYS 261 1_555 B SG CYS 93 A CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf4 B SG CYS 139 A CYS 367 1_555 B SG CYS 197 A CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 C SG CYS 25 C CYS 43 1_555 C SG CYS 67 C CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf6 C SG CYS 106 C CYS 124 1_555 C SG CYS 150 C CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf7 C SG CYS 194 C CYS 212 1_555 C SG CYS 242 C CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 69 B ASN 297 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 B ND2 ASN 69 A ASN 297 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale5 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale6 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale7 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 D O2 MAN . D MAN 4 1_555 D C1 NAG . D NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale9 D O2 MAN . D MAN 6 1_555 D C1 NAG . D NAG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale10 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale11 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale12 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale13 E O6 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale14 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale15 E O2 MAN . E MAN 4 1_555 E C1 NAG . E NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale16 E O4 NAG . E NAG 5 1_555 E C1 GAL . E GAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale17 E O2 MAN . E MAN 7 1_555 E C1 NAG . E NAG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 415 n n S O2 SO4 doub 416 n n S O3 SO4 sing 417 n n S O4 SO4 sing 418 n n # _atom_sites.entry_id 8DJ7 _atom_sites.fract_transf_matrix[1][1] 0.004846 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000579 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 SO4 A 1 501 1 SO4 SO4 . G 5 SO4 C 1 301 2 SO4 SO4 . H 6 HOH B 1 501 61 HOH HOH . H 6 HOH B 2 502 43 HOH HOH . H 6 HOH B 3 503 83 HOH HOH . H 6 HOH B 4 504 78 HOH HOH . H 6 HOH B 5 505 104 HOH HOH . H 6 HOH B 6 506 99 HOH HOH . H 6 HOH B 7 507 13 HOH HOH . H 6 HOH B 8 508 51 HOH HOH . H 6 HOH B 9 509 30 HOH HOH . H 6 HOH B 10 510 27 HOH HOH . H 6 HOH B 11 511 68 HOH HOH . H 6 HOH B 12 512 133 HOH HOH . H 6 HOH B 13 513 124 HOH HOH . H 6 HOH B 14 514 92 HOH HOH . I 6 HOH A 1 601 41 HOH HOH . I 6 HOH A 2 602 64 HOH HOH . I 6 HOH A 3 603 4 HOH HOH . I 6 HOH A 4 604 24 HOH HOH . I 6 HOH A 5 605 96 HOH HOH . I 6 HOH A 6 606 37 HOH HOH . I 6 HOH A 7 607 121 HOH HOH . I 6 HOH A 8 608 48 HOH HOH . I 6 HOH A 9 609 28 HOH HOH . I 6 HOH A 10 610 36 HOH HOH . I 6 HOH A 11 611 46 HOH HOH . I 6 HOH A 12 612 45 HOH HOH . I 6 HOH A 13 613 93 HOH HOH . I 6 HOH A 14 614 14 HOH HOH . I 6 HOH A 15 615 34 HOH HOH . I 6 HOH A 16 616 69 HOH HOH . I 6 HOH A 17 617 58 HOH HOH . I 6 HOH A 18 618 18 HOH HOH . I 6 HOH A 19 619 90 HOH HOH . I 6 HOH A 20 620 95 HOH HOH . I 6 HOH A 21 621 52 HOH HOH . I 6 HOH A 22 622 103 HOH HOH . I 6 HOH A 23 623 56 HOH HOH . I 6 HOH A 24 624 109 HOH HOH . I 6 HOH A 25 625 32 HOH HOH . I 6 HOH A 26 626 23 HOH HOH . I 6 HOH A 27 627 71 HOH HOH . I 6 HOH A 28 628 3 HOH HOH . I 6 HOH A 29 629 67 HOH HOH . I 6 HOH A 30 630 55 HOH HOH . I 6 HOH A 31 631 100 HOH HOH . I 6 HOH A 32 632 38 HOH HOH . I 6 HOH A 33 633 73 HOH HOH . I 6 HOH A 34 634 65 HOH HOH . I 6 HOH A 35 635 21 HOH HOH . I 6 HOH A 36 636 39 HOH HOH . I 6 HOH A 37 637 22 HOH HOH . I 6 HOH A 38 638 101 HOH HOH . I 6 HOH A 39 639 88 HOH HOH . I 6 HOH A 40 640 16 HOH HOH . I 6 HOH A 41 641 94 HOH HOH . I 6 HOH A 42 642 125 HOH HOH . I 6 HOH A 43 643 49 HOH HOH . I 6 HOH A 44 644 118 HOH HOH . I 6 HOH A 45 645 12 HOH HOH . I 6 HOH A 46 646 97 HOH HOH . I 6 HOH A 47 647 29 HOH HOH . I 6 HOH A 48 648 110 HOH HOH . I 6 HOH A 49 649 126 HOH HOH . I 6 HOH A 50 650 119 HOH HOH . I 6 HOH A 51 651 76 HOH HOH . I 6 HOH A 52 652 87 HOH HOH . I 6 HOH A 53 653 66 HOH HOH . I 6 HOH A 54 654 84 HOH HOH . I 6 HOH A 55 655 70 HOH HOH . I 6 HOH A 56 656 74 HOH HOH . I 6 HOH A 57 657 44 HOH HOH . I 6 HOH A 58 658 31 HOH HOH . I 6 HOH A 59 659 122 HOH HOH . I 6 HOH A 60 660 111 HOH HOH . I 6 HOH A 61 661 116 HOH HOH . I 6 HOH A 62 662 17 HOH HOH . J 6 HOH C 1 401 108 HOH HOH . J 6 HOH C 2 402 6 HOH HOH . J 6 HOH C 3 403 63 HOH HOH . J 6 HOH C 4 404 9 HOH HOH . J 6 HOH C 5 405 47 HOH HOH . J 6 HOH C 6 406 15 HOH HOH . J 6 HOH C 7 407 59 HOH HOH . J 6 HOH C 8 408 2 HOH HOH . J 6 HOH C 9 409 7 HOH HOH . J 6 HOH C 10 410 130 HOH HOH . J 6 HOH C 11 411 102 HOH HOH . J 6 HOH C 12 412 75 HOH HOH . J 6 HOH C 13 413 106 HOH HOH . J 6 HOH C 14 414 105 HOH HOH . J 6 HOH C 15 415 53 HOH HOH . J 6 HOH C 16 416 57 HOH HOH . J 6 HOH C 17 417 131 HOH HOH . J 6 HOH C 18 418 98 HOH HOH . J 6 HOH C 19 419 11 HOH HOH . J 6 HOH C 20 420 77 HOH HOH . J 6 HOH C 21 421 85 HOH HOH . J 6 HOH C 22 422 20 HOH HOH . J 6 HOH C 23 423 54 HOH HOH . J 6 HOH C 24 424 86 HOH HOH . J 6 HOH C 25 425 132 HOH HOH . J 6 HOH C 26 426 72 HOH HOH . J 6 HOH C 27 427 107 HOH HOH . J 6 HOH C 28 428 117 HOH HOH . J 6 HOH C 29 429 79 HOH HOH . J 6 HOH C 30 430 8 HOH HOH . J 6 HOH C 31 431 62 HOH HOH . J 6 HOH C 32 432 128 HOH HOH . J 6 HOH C 33 433 5 HOH HOH . J 6 HOH C 34 434 40 HOH HOH . J 6 HOH C 35 435 35 HOH HOH . J 6 HOH C 36 436 81 HOH HOH . J 6 HOH C 37 437 25 HOH HOH . J 6 HOH C 38 438 91 HOH HOH . J 6 HOH C 39 439 129 HOH HOH . J 6 HOH C 40 440 42 HOH HOH . J 6 HOH C 41 441 127 HOH HOH . J 6 HOH C 42 442 112 HOH HOH . J 6 HOH C 43 443 123 HOH HOH . J 6 HOH C 44 444 80 HOH HOH . J 6 HOH C 45 445 19 HOH HOH . J 6 HOH C 46 446 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . F 5 51.393 -42.468 -3.981 1 116.91 ? S SO4 501 A 1 HETATM 2 O O1 SO4 . . . F 5 51.485 -43.078 -5.303 1 83.99 ? O1 SO4 501 A 1 HETATM 3 O O2 SO4 . . . F 5 52.01 -41.144 -4.017 1 109.68 ? O2 SO4 501 A 1 HETATM 4 O O3 SO4 . . . F 5 52.084 -43.306 -3.006 1 80.27 ? O3 SO4 501 A 1 HETATM 5 O O4 SO4 . . . F 5 49.991 -42.336 -3.595 1 94.32 ? O4 SO4 501 A 1 # _model_server_stats.io_time_ms 131 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #