data_8DJK # _model_server_result.job_id pE6cB7FcUom0VlSeXsaiBA _model_server_result.datetime_utc '2025-07-18 10:32:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8djk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 8DJK # _exptl.entry_id 8DJK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DJK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DJK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 23 L CYS 42 1_555 D SG CYS 88 L CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 E SG CYS 22 H CYS 41 1_555 E SG CYS 96 H CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 561 n n CBA CAB Y01 sing 562 n n CBA CAN Y01 sing 563 n n CAN CAJ Y01 sing 564 n n CAJ CAO Y01 sing 565 n n CAO CBB Y01 sing 566 n n CBB CAC Y01 sing 567 n n CBB CBE Y01 sing 568 n n CBE CAP Y01 sing 569 n n CBE CBI Y01 sing 570 n n CAP CAQ Y01 sing 571 n n CAQ CBG Y01 sing 572 n n CBG CBI Y01 sing 573 n n CBG CBD Y01 sing 574 n n CBI CAE Y01 sing 575 n n CBI CAU Y01 sing 576 n n CAU CAS Y01 sing 577 n n CAS CBF Y01 sing 578 n n CBF CBD Y01 sing 579 n n CBF CBH Y01 sing 580 n n CBD CAK Y01 sing 581 n n CAK CAI Y01 sing 582 n n CAI CAZ Y01 doub 583 n n CAZ CAV Y01 sing 584 n n CAZ CBH Y01 sing 585 n n CAV CBC Y01 sing 586 n n CBH CAD Y01 sing 587 n n CBH CAT Y01 sing 588 n n CAT CAR Y01 sing 589 n n CAR CBC Y01 sing 590 n n CBC OAW Y01 sing 591 n n OAW CAY Y01 sing 592 n n CAY OAG Y01 doub 593 n n CAY CAM Y01 sing 594 n n CAM CAL Y01 sing 595 n n CAL CAX Y01 sing 596 n n CAX OAH Y01 sing 597 n n CAX OAF Y01 doub 598 n n CAA HAA1 Y01 sing 599 n n CAA HAA2 Y01 sing 600 n n CAA HAA3 Y01 sing 601 n n CBA HBA Y01 sing 602 n n CAB HAB1 Y01 sing 603 n n CAB HAB2 Y01 sing 604 n n CAB HAB3 Y01 sing 605 n n CAN HAN1 Y01 sing 606 n n CAN HAN2 Y01 sing 607 n n CAJ HAJ1 Y01 sing 608 n n CAJ HAJ2 Y01 sing 609 n n CAO HAO1 Y01 sing 610 n n CAO HAO2 Y01 sing 611 n n CBB HBB Y01 sing 612 n n CAC HAC1 Y01 sing 613 n n CAC HAC2 Y01 sing 614 n n CAC HAC3 Y01 sing 615 n n CBE HBE Y01 sing 616 n n CAP HAP1 Y01 sing 617 n n CAP HAP2 Y01 sing 618 n n CAQ HAQ1 Y01 sing 619 n n CAQ HAQ2 Y01 sing 620 n n CBG HBG Y01 sing 621 n n CBD HBD Y01 sing 622 n n CAE HAE1 Y01 sing 623 n n CAE HAE2 Y01 sing 624 n n CAE HAE3 Y01 sing 625 n n CAU HAU1 Y01 sing 626 n n CAU HAU2 Y01 sing 627 n n CAS HAS1 Y01 sing 628 n n CAS HAS2 Y01 sing 629 n n CBF HBF Y01 sing 630 n n CAK HAK1 Y01 sing 631 n n CAK HAK2 Y01 sing 632 n n CAI HAI Y01 sing 633 n n CAV HAV1 Y01 sing 634 n n CAV HAV2 Y01 sing 635 n n CBC HBC Y01 sing 636 n n CAD HAD1 Y01 sing 637 n n CAD HAD2 Y01 sing 638 n n CAD HAD3 Y01 sing 639 n n CAT HAT1 Y01 sing 640 n n CAT HAT2 Y01 sing 641 n n CAR HAR1 Y01 sing 642 n n CAR HAR2 Y01 sing 643 n n CAM HAM1 Y01 sing 644 n n CAM HAM2 Y01 sing 645 n n CAL HAL1 Y01 sing 646 n n CAL HAL2 Y01 sing 647 n n OAH HAH Y01 sing 648 n n # _atom_sites.entry_id 8DJK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 Y01 A 1 401 1 Y01 Y01 . G 6 Y01 A 1 402 2 Y01 Y01 . H 6 Y01 A 1 403 3 Y01 Y01 . I 6 Y01 A 1 404 4 Y01 Y01 . J 6 Y01 A 1 405 5 Y01 Y01 . K 7 AJP A 1 406 7 AJP AJP . L 7 AJP B 1 401 6 AJP AJP . M 6 Y01 B 1 402 8 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . G 6 114.402 110.292 141.644 1 151.9 ? CAA Y01 402 A 1 HETATM 2 C CBA Y01 . . . G 6 115.55 111.21 142.133 1 151.8 ? CBA Y01 402 A 1 HETATM 3 C CAB Y01 . . . G 6 115.805 112.389 141.208 1 151.65 ? CAB Y01 402 A 1 HETATM 4 C CAN Y01 . . . G 6 116.893 110.398 142.424 1 151.98 ? CAN Y01 402 A 1 HETATM 5 C CAJ Y01 . . . G 6 117.126 110.296 143.991 1 152.17 ? CAJ Y01 402 A 1 HETATM 6 C CAO Y01 . . . G 6 116.967 108.811 144.431 1 152.56 ? CAO Y01 402 A 1 HETATM 7 C CBB Y01 . . . G 6 118.22 107.787 144.172 1 152.91 ? CBB Y01 402 A 1 HETATM 8 C CAC Y01 . . . G 6 119.541 108.475 143.547 1 152.88 ? CAC Y01 402 A 1 HETATM 9 C CBE Y01 . . . G 6 118.589 107.027 145.274 1 153.32 ? CBE Y01 402 A 1 HETATM 10 C CAP Y01 . . . G 6 118.54 107.714 146.796 1 153.49 ? CAP Y01 402 A 1 HETATM 11 C CAQ Y01 . . . G 6 118.505 106.421 147.762 1 153.64 ? CAQ Y01 402 A 1 HETATM 12 C CBG Y01 . . . G 6 118.447 105.126 146.792 1 153.84 ? CBG Y01 402 A 1 HETATM 13 C CBI Y01 . . . G 6 117.698 105.589 145.51 1 153.68 ? CBI Y01 402 A 1 HETATM 14 C CAE Y01 . . . G 6 116.19 105.944 145.896 1 153.6 ? CAE Y01 402 A 1 HETATM 15 C CAU Y01 . . . G 6 117.637 104.6 144.514 1 153.95 ? CAU Y01 402 A 1 HETATM 16 C CAS Y01 . . . G 6 117.311 103.103 145.086 1 154.16 ? CAS Y01 402 A 1 HETATM 17 C CBF Y01 . . . G 6 118.293 102.717 146.217 1 154.38 ? CBF Y01 402 A 1 HETATM 18 C CBD Y01 . . . G 6 118.171 103.698 147.335 1 154.17 ? CBD Y01 402 A 1 HETATM 19 C CAK Y01 . . . G 6 116.738 103.568 148.154 1 154.37 ? CAK Y01 402 A 1 HETATM 20 C CAI Y01 . . . G 6 116.506 102.164 148.601 1 154.7 ? CAI Y01 402 A 1 HETATM 21 C CAZ Y01 . . . G 6 116.866 100.923 147.51 1 155.06 ? CAZ Y01 402 A 1 HETATM 22 C CAV Y01 . . . G 6 116.673 99.495 148.075 1 155.44 ? CAV Y01 402 A 1 HETATM 23 C CBH Y01 . . . G 6 118.128 101.09 146.768 1 154.88 ? CBH Y01 402 A 1 HETATM 24 C CAD Y01 . . . G 6 118.201 100.146 145.518 1 154.84 ? CAD Y01 402 A 1 HETATM 25 C CAT Y01 . . . G 6 119.342 100.725 147.666 1 155.2 ? CAT Y01 402 A 1 HETATM 26 C CAR Y01 . . . G 6 119.246 99.338 148.356 1 155.4 ? CAR Y01 402 A 1 HETATM 27 C CBC Y01 . . . G 6 117.893 98.97 148.877 1 155.66 ? CBC Y01 402 A 1 HETATM 28 O OAW Y01 . . . G 6 117.692 97.543 148.995 1 156.48 ? OAW Y01 402 A 1 HETATM 29 C CAY Y01 . . . G 6 118.177 96.626 147.979 1 157.37 ? CAY Y01 402 A 1 HETATM 30 O OAG Y01 . . . G 6 117.835 96.727 146.846 1 157.5 ? OAG Y01 402 A 1 HETATM 31 C CAM Y01 . . . G 6 119.166 95.49 148.381 1 157.76 ? CAM Y01 402 A 1 HETATM 32 C CAL Y01 . . . G 6 118.979 95.101 149.844 1 157.97 ? CAL Y01 402 A 1 HETATM 33 C CAX Y01 . . . G 6 119.908 95.882 150.736 1 158.05 ? CAX Y01 402 A 1 HETATM 34 O OAH Y01 . . . G 6 119.856 97.143 150.793 1 158 ? OAH Y01 402 A 1 HETATM 35 O OAF Y01 . . . G 6 120.748 95.271 151.435 1 157.97 ? OAF Y01 402 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #