data_8DJM
#
_model_server_result.job_id            aAw66oz5BfJxnk1bLLEAFg 
_model_server_result.datetime_utc      '2025-07-07 06:17:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8djm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":401}' 
#
_entry.id    8DJM 
#
_exptl.entry_id    8DJM 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DJM 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DJM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
? 6 H N N 
? 6 I N N 
? 6 K N N 
? 6 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 23 L CYS 42 1_555 D SG CYS 88 L CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 E SG CYS 22 H CYS 41 1_555 E SG CYS 96 H CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 561 n n 
CBA CAB Y01 sing 562 n n 
CBA CAN Y01 sing 563 n n 
CAN CAJ Y01 sing 564 n n 
CAJ CAO Y01 sing 565 n n 
CAO CBB Y01 sing 566 n n 
CBB CAC Y01 sing 567 n n 
CBB CBE Y01 sing 568 n n 
CBE CAP Y01 sing 569 n n 
CBE CBI Y01 sing 570 n n 
CAP CAQ Y01 sing 571 n n 
CAQ CBG Y01 sing 572 n n 
CBG CBI Y01 sing 573 n n 
CBG CBD Y01 sing 574 n n 
CBI CAE Y01 sing 575 n n 
CBI CAU Y01 sing 576 n n 
CAU CAS Y01 sing 577 n n 
CAS CBF Y01 sing 578 n n 
CBF CBD Y01 sing 579 n n 
CBF CBH Y01 sing 580 n n 
CBD CAK Y01 sing 581 n n 
CAK CAI Y01 sing 582 n n 
CAI CAZ Y01 doub 583 n n 
CAZ CAV Y01 sing 584 n n 
CAZ CBH Y01 sing 585 n n 
CAV CBC Y01 sing 586 n n 
CBH CAD Y01 sing 587 n n 
CBH CAT Y01 sing 588 n n 
CAT CAR Y01 sing 589 n n 
CAR CBC Y01 sing 590 n n 
CBC OAW Y01 sing 591 n n 
OAW CAY Y01 sing 592 n n 
CAY OAG Y01 doub 593 n n 
CAY CAM Y01 sing 594 n n 
CAM CAL Y01 sing 595 n n 
CAL CAX Y01 sing 596 n n 
CAX OAH Y01 sing 597 n n 
CAX OAF Y01 doub 598 n n 
CAA HAA1 Y01 sing 599 n n 
CAA HAA2 Y01 sing 600 n n 
CAA HAA3 Y01 sing 601 n n 
CBA HBA Y01 sing 602 n n 
CAB HAB1 Y01 sing 603 n n 
CAB HAB2 Y01 sing 604 n n 
CAB HAB3 Y01 sing 605 n n 
CAN HAN1 Y01 sing 606 n n 
CAN HAN2 Y01 sing 607 n n 
CAJ HAJ1 Y01 sing 608 n n 
CAJ HAJ2 Y01 sing 609 n n 
CAO HAO1 Y01 sing 610 n n 
CAO HAO2 Y01 sing 611 n n 
CBB HBB Y01 sing 612 n n 
CAC HAC1 Y01 sing 613 n n 
CAC HAC2 Y01 sing 614 n n 
CAC HAC3 Y01 sing 615 n n 
CBE HBE Y01 sing 616 n n 
CAP HAP1 Y01 sing 617 n n 
CAP HAP2 Y01 sing 618 n n 
CAQ HAQ1 Y01 sing 619 n n 
CAQ HAQ2 Y01 sing 620 n n 
CBG HBG Y01 sing 621 n n 
CBD HBD Y01 sing 622 n n 
CAE HAE1 Y01 sing 623 n n 
CAE HAE2 Y01 sing 624 n n 
CAE HAE3 Y01 sing 625 n n 
CAU HAU1 Y01 sing 626 n n 
CAU HAU2 Y01 sing 627 n n 
CAS HAS1 Y01 sing 628 n n 
CAS HAS2 Y01 sing 629 n n 
CBF HBF Y01 sing 630 n n 
CAK HAK1 Y01 sing 631 n n 
CAK HAK2 Y01 sing 632 n n 
CAI HAI Y01 sing 633 n n 
CAV HAV1 Y01 sing 634 n n 
CAV HAV2 Y01 sing 635 n n 
CBC HBC Y01 sing 636 n n 
CAD HAD1 Y01 sing 637 n n 
CAD HAD2 Y01 sing 638 n n 
CAD HAD3 Y01 sing 639 n n 
CAT HAT1 Y01 sing 640 n n 
CAT HAT2 Y01 sing 641 n n 
CAR HAR1 Y01 sing 642 n n 
CAR HAR2 Y01 sing 643 n n 
CAM HAM1 Y01 sing 644 n n 
CAM HAM2 Y01 sing 645 n n 
CAL HAL1 Y01 sing 646 n n 
CAL HAL2 Y01 sing 647 n n 
OAH HAH Y01 sing 648 n n 
#
_atom_sites.entry_id                     8DJM 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 Y01 A 1 401 1 Y01 Y01 . 
G 6 Y01 A 1 402 2 Y01 Y01 . 
H 6 Y01 A 1 403 3 Y01 Y01 . 
I 6 Y01 A 1 404 5 Y01 Y01 . 
J 7 AJP A 1 405 7 AJP AJP . 
K 6 Y01 B 1 401 4 Y01 Y01 . 
L 7 AJP B 1 402 6 AJP AJP . 
M 6 Y01 B 1 403 8 Y01 Y01 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . K 6 129.908 133.57 123.436 1 97.56 ? CAA Y01 401 B 1 
HETATM 2 C CBA Y01 . . . K 6 130.374 132.137 123.788 1 97.75 ? CBA Y01 401 B 1 
HETATM 3 C CAB Y01 . . . K 6 129.798 131.101 122.838 1 97.74 ? CAB Y01 401 B 1 
HETATM 4 C CAN Y01 . . . K 6 131.967 132.085 123.792 1 98.18 ? CAN Y01 401 B 1 
HETATM 5 C CAJ Y01 . . . K 6 132.495 130.751 124.478 1 98.76 ? CAJ Y01 401 B 1 
HETATM 6 C CAO Y01 . . . K 6 132.974 131.021 125.946 1 99.6 ? CAO Y01 401 B 1 
HETATM 7 C CBB Y01 . . . K 6 133.864 129.842 126.653 1 100.58 ? CBB Y01 401 B 1 
HETATM 8 C CAC Y01 . . . K 6 133.612 128.391 126.004 1 100.34 ? CAC Y01 401 B 1 
HETATM 9 C CBE Y01 . . . K 6 135.221 130.108 126.657 1 101.98 ? CBE Y01 401 B 1 
HETATM 10 C CAP Y01 . . . K 6 135.691 131.656 127.09 1 102.47 ? CAP Y01 401 B 1 
HETATM 11 C CAQ Y01 . . . K 6 137.196 131.519 127.691 1 103.02 ? CAQ Y01 401 B 1 
HETATM 12 C CBG Y01 . . . K 6 137.519 129.937 127.456 1 103.65 ? CBG Y01 401 B 1 
HETATM 13 C CBI Y01 . . . K 6 136.16 129.236 127.793 1 103.01 ? CBI Y01 401 B 1 
HETATM 14 C CAE Y01 . . . K 6 135.586 129.624 129.245 1 102.94 ? CAE Y01 401 B 1 
HETATM 15 C CAU Y01 . . . K 6 136.333 127.846 127.814 1 103.63 ? CAU Y01 401 B 1 
HETATM 16 C CAS Y01 . . . K 6 137.462 127.377 128.911 1 104.42 ? CAS Y01 401 B 1 
HETATM 17 C CBF Y01 . . . K 6 138.862 127.999 128.711 1 105.41 ? CBF Y01 401 B 1 
HETATM 18 C CBD Y01 . . . K 6 138.879 129.183 127.764 1 104.93 ? CBD Y01 401 B 1 
HETATM 19 C CAK Y01 . . . K 6 140.044 130.322 128.093 1 105.69 ? CAK Y01 401 B 1 
HETATM 20 C CAI Y01 . . . K 6 141.297 129.701 128.639 1 106.51 ? CAI Y01 401 B 1 
HETATM 21 C CAZ Y01 . . . K 6 141.12 128.596 129.906 1 107.54 ? CAZ Y01 401 B 1 
HETATM 22 C CAV Y01 . . . K 6 142.154 127.451 130.141 1 108.93 ? CAV Y01 401 B 1 
HETATM 23 C CBH Y01 . . . K 6 139.723 128.241 130.205 1 107.04 ? CBH Y01 401 B 1 
HETATM 24 C CAD Y01 . . . K 6 139.152 129.447 131.001 1 107.12 ? CAD Y01 401 B 1 
HETATM 25 C CAT Y01 . . . K 6 139.631 126.994 131.128 1 108.13 ? CAT Y01 401 B 1 
HETATM 26 C CAR Y01 . . . K 6 140.306 125.752 130.501 1 109.09 ? CAR Y01 401 B 1 
HETATM 27 C CBC Y01 . . . K 6 141.575 126.046 129.788 1 109.94 ? CBC Y01 401 B 1 
HETATM 28 O OAW Y01 . . . K 6 142.499 124.949 130.004 1 112.45 ? OAW Y01 401 B 1 
HETATM 29 C CAY Y01 . . . K 6 143.464 124.971 131.084 1 115.03 ? CAY Y01 401 B 1 
HETATM 30 O OAG Y01 . . . K 6 144.523 125.478 130.905 1 114.64 ? OAG Y01 401 B 1 
HETATM 31 C CAM Y01 . . . K 6 143.136 124.313 132.464 1 116.71 ? CAM Y01 401 B 1 
HETATM 32 C CAL Y01 . . . K 6 143.365 125.306 133.603 1 117.9 ? CAL Y01 401 B 1 
HETATM 33 C CAX Y01 . . . K 6 142.175 125.457 134.511 1 118.67 ? CAX Y01 401 B 1 
HETATM 34 O OAH Y01 . . . K 6 141.024 125.682 134.042 1 119.01 ? OAH Y01 401 B 1 
HETATM 35 O OAF Y01 . . . K 6 142.331 125.366 135.75 1 119.17 ? OAF Y01 401 B 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           39 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           1255 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           35 
#