data_8DJV # _model_server_result.job_id yjJ9z3B4UFaNAteeaOY5Eg _model_server_result.datetime_utc '2024-11-24 23:08:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8djv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 8DJV # _exptl.entry_id 8DJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 263.045 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-bromo-3-hydroxy-N-methoxy-4-oxo-1,4-dihydropyridine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8DJV _cell.length_a 74.465 _cell.length_b 74.465 _cell.length_c 120.259 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall 'P 62 2 (x,y,z+1/3)' _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 47 A HIS 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc2 A OE2 GLU 74 A GLU 80 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc3 A OD2 ASP 102 A ASP 108 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc4 A OD1 ASP 102 A ASP 108 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc5 A OE2 GLU 113 A GLU 119 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc6 A O ILE 114 A ILE 120 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc7 B MN MN . A MN 301 1_555 D O01 U3U . A U3U 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc8 B MN MN . A MN 301 1_555 D O14 U3U . A U3U 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc9 C MN MN . A MN 302 1_555 D O01 U3U . A U3U 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc10 C MN MN . A MN 302 1_555 D O08 U3U . A U3U 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? metalc ? metalc11 C MN MN . A MN 302 1_555 E O HOH . A HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? # _chem_comp.formula 'C7 H7 Br N2 O4' _chem_comp.formula_weight 263.045 _chem_comp.id U3U _chem_comp.mon_nstd_flag . _chem_comp.name 6-bromo-3-hydroxy-N-methoxy-4-oxo-1,4-dihydropyridine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 O06 U3U sing 358 n n O06 N05 U3U sing 359 n n N05 C04 U3U sing 360 n n BR11 C10 U3U sing 361 n n N09 C10 U3U sing 362 n n N09 C03 U3U sing 363 n n C10 C12 U3U doub 364 n n C04 C03 U3U sing 365 n n C04 O08 U3U doub 366 n n C03 C02 U3U doub 367 n n C12 C13 U3U sing 368 n n C02 C13 U3U sing 369 n n C02 O01 U3U sing 370 n n C13 O14 U3U doub 371 n n C12 H121 U3U sing 372 n n C07 H072 U3U sing 373 n n C07 H073 U3U sing 374 n n C07 H071 U3U sing 375 n n N05 H051 U3U sing 376 n n N09 H1 U3U sing 377 n n O01 H2 U3U sing 378 n n # _atom_sites.entry_id 8DJV _atom_sites.fract_transf_matrix[1][1] 0.013429 _atom_sites.fract_transf_matrix[1][2] 0.007753 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015507 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 301 MN MN . C 2 MN A 1 302 302 MN MN . D 3 U3U A 1 303 200 U3U NOM . E 4 HOH A 1 401 65 HOH HOH . E 4 HOH A 2 402 58 HOH HOH . E 4 HOH A 3 403 46 HOH HOH . E 4 HOH A 4 404 33 HOH HOH . E 4 HOH A 5 405 60 HOH HOH . E 4 HOH A 6 406 64 HOH HOH . E 4 HOH A 7 407 6 HOH HOH . E 4 HOH A 8 408 14 HOH HOH . E 4 HOH A 9 409 16 HOH HOH . E 4 HOH A 10 410 9 HOH HOH . E 4 HOH A 11 411 43 HOH HOH . E 4 HOH A 12 412 10 HOH HOH . E 4 HOH A 13 413 12 HOH HOH . E 4 HOH A 14 414 27 HOH HOH . E 4 HOH A 15 415 30 HOH HOH . E 4 HOH A 16 416 4 HOH HOH . E 4 HOH A 17 417 13 HOH HOH . E 4 HOH A 18 418 38 HOH HOH . E 4 HOH A 19 419 8 HOH HOH . E 4 HOH A 20 420 5 HOH HOH . E 4 HOH A 21 421 35 HOH HOH . E 4 HOH A 22 422 22 HOH HOH . E 4 HOH A 23 423 29 HOH HOH . E 4 HOH A 24 424 56 HOH HOH . E 4 HOH A 25 425 18 HOH HOH . E 4 HOH A 26 426 54 HOH HOH . E 4 HOH A 27 427 41 HOH HOH . E 4 HOH A 28 428 15 HOH HOH . E 4 HOH A 29 429 31 HOH HOH . E 4 HOH A 30 430 17 HOH HOH . E 4 HOH A 31 431 69 HOH HOH . E 4 HOH A 32 432 48 HOH HOH . E 4 HOH A 33 433 19 HOH HOH . E 4 HOH A 34 434 45 HOH HOH . E 4 HOH A 35 435 21 HOH HOH . E 4 HOH A 36 436 47 HOH HOH . E 4 HOH A 37 437 2 HOH HOH . E 4 HOH A 38 438 11 HOH HOH . E 4 HOH A 39 439 42 HOH HOH . E 4 HOH A 40 440 44 HOH HOH . E 4 HOH A 41 441 36 HOH HOH . E 4 HOH A 42 442 32 HOH HOH . E 4 HOH A 43 443 68 HOH HOH . E 4 HOH A 44 444 49 HOH HOH . E 4 HOH A 45 445 59 HOH HOH . E 4 HOH A 46 446 28 HOH HOH . E 4 HOH A 47 447 61 HOH HOH . E 4 HOH A 48 448 50 HOH HOH . E 4 HOH A 49 449 57 HOH HOH . E 4 HOH A 50 450 66 HOH HOH . E 4 HOH A 51 451 39 HOH HOH . E 4 HOH A 52 452 7 HOH HOH . E 4 HOH A 53 453 34 HOH HOH . E 4 HOH A 54 454 55 HOH HOH . E 4 HOH A 55 455 37 HOH HOH . E 4 HOH A 56 456 70 HOH HOH . E 4 HOH A 57 457 53 HOH HOH . E 4 HOH A 58 458 51 HOH HOH . E 4 HOH A 59 459 67 HOH HOH . E 4 HOH A 60 460 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 U3U . . . D 3 21.075 18.154 -15.7 1 50.23 ? C10 U3U 303 A 1 HETATM 2 C C13 U3U . . . D 3 20.587 17.563 -13.211 1 34.6 ? C13 U3U 303 A 1 HETATM 3 C C12 U3U . . . D 3 21.411 18.276 -14.212 1 38.34 ? C12 U3U 303 A 1 HETATM 4 C C02 U3U . . . D 3 19.444 16.737 -13.645 1 33.58 ? C02 U3U 303 A 1 HETATM 5 C C03 U3U . . . D 3 19.1 16.608 -15.136 1 42.66 ? C03 U3U 303 A 1 HETATM 6 C C04 U3U . . . D 3 17.92 15.767 -15.652 1 37.75 ? C04 U3U 303 A 1 HETATM 7 C C07 U3U . . . D 3 16.939 14.168 -18.662 1 65.26 ? C07 U3U 303 A 1 HETATM 8 N N05 U3U . . . D 3 17.596 15.708 -17.07 1 50.06 ? N05 U3U 303 A 1 HETATM 9 N N09 U3U . . . D 3 19.922 17.318 -16.139 1 40.25 ? N09 U3U 303 A 1 HETATM 10 O O01 U3U . . . D 3 18.716 16.102 -12.631 1 32.62 -1 O01 U3U 303 A 1 HETATM 11 O O06 U3U . . . D 3 16.523 14.924 -17.555 1 54.5 ? O06 U3U 303 A 1 HETATM 12 O O08 U3U . . . D 3 17.272 15.164 -14.89 1 35.71 ? O08 U3U 303 A 1 HETATM 13 O O14 U3U . . . D 3 20.828 17.642 -12.045 1 33.18 ? O14 U3U 303 A 1 HETATM 14 BR BR11 U3U . . . D 3 22.144 19.098 -17.02 1 82.32 ? BR11 U3U 303 A 1 HETATM 15 H H121 U3U . . . D 3 22.251 18.883 -13.893 1 46.05 ? H121 U3U 303 A 1 HETATM 16 H H072 U3U . . . D 3 16.2 14.25 -19.455 1 78.36 ? H072 U3U 303 A 1 HETATM 17 H H073 U3U . . . D 3 17.045 13.127 -18.37 1 78.36 ? H073 U3U 303 A 1 HETATM 18 H H071 U3U . . . D 3 17.895 14.544 -19.018 1 78.36 ? H071 U3U 303 A 1 HETATM 19 H H051 U3U . . . D 3 18.147 16.236 -17.718 1 60.12 ? H051 U3U 303 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #