data_8DJY # _model_server_result.job_id Vdf3K9trmcwYeJSH9awH4g _model_server_result.datetime_utc '2024-11-14 13:21:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8djy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8DJY # _exptl.entry_id 8DJY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 258.072 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2M)-6-bromo-2-(4,5-dihydro-1H-imidazol-2-yl)-3-hydroxypyridin-4(1H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8DJY _cell.length_a 75.807 _cell.length_b 75.807 _cell.length_c 119.978 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DJY _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall 'P 62 2 (x,y,z+1/3)' _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 47 A HIS 41 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc2 A OE1 GLU 74 A GLU 80 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc3 A OD2 ASP 102 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc4 A OD1 ASP 102 A ASP 108 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc5 A OE2 GLU 113 A GLU 119 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc6 A O ILE 114 A ILE 120 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc7 B O01 U3L . A U3L 201 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc8 B O14 U3L . A U3L 201 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc9 B N05 U3L . A U3L 201 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? metalc ? metalc10 B O01 U3L . A U3L 201 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc11 D MN MN . A MN 203 1_555 E O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc12 D MN MN . A MN 203 1_555 E O HOH . A HOH 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? # _chem_comp.formula 'C8 H8 Br N3 O2' _chem_comp.formula_weight 258.072 _chem_comp.id U3L _chem_comp.mon_nstd_flag . _chem_comp.name (2M)-6-bromo-2-(4,5-dihydro-1H-imidazol-2-yl)-3-hydroxypyridin-4(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 N08 U3L sing 358 n n C07 C06 U3L sing 359 n n N08 C04 U3L sing 360 n n BR11 C10 U3L sing 361 n n N09 C10 U3L sing 362 n n N09 C03 U3L sing 363 n n C10 C12 U3L doub 364 n n C06 N05 U3L sing 365 n n C04 C03 U3L sing 366 n n C04 N05 U3L doub 367 n n C03 C02 U3L doub 368 n n C12 C13 U3L sing 369 n n C02 C13 U3L sing 370 n n C02 O01 U3L sing 371 n n C13 O14 U3L doub 372 n n C06 H062 U3L sing 373 n n C06 H061 U3L sing 374 n n C07 H072 U3L sing 375 n n C07 H071 U3L sing 376 n n C12 H121 U3L sing 377 n n N08 H081 U3L sing 378 n n N09 H091 U3L sing 379 n n O01 H1 U3L sing 380 n n # _atom_sites.entry_id 8DJY _atom_sites.fract_transf_matrix[1][1] 0.013191 _atom_sites.fract_transf_matrix[1][2] 0.007616 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015232 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U3L A 1 201 1 U3L NN . C 3 MN A 1 202 301 MN MN . D 3 MN A 1 203 302 MN MN . E 4 HOH A 1 301 21 HOH HOH . E 4 HOH A 2 302 1 HOH HOH . E 4 HOH A 3 303 56 HOH HOH . E 4 HOH A 4 304 17 HOH HOH . E 4 HOH A 5 305 43 HOH HOH . E 4 HOH A 6 306 73 HOH HOH . E 4 HOH A 7 307 54 HOH HOH . E 4 HOH A 8 308 7 HOH HOH . E 4 HOH A 9 309 8 HOH HOH . E 4 HOH A 10 310 62 HOH HOH . E 4 HOH A 11 311 66 HOH HOH . E 4 HOH A 12 312 69 HOH HOH . E 4 HOH A 13 313 67 HOH HOH . E 4 HOH A 14 314 3 HOH HOH . E 4 HOH A 15 315 52 HOH HOH . E 4 HOH A 16 316 22 HOH HOH . E 4 HOH A 17 317 20 HOH HOH . E 4 HOH A 18 318 65 HOH HOH . E 4 HOH A 19 319 80 HOH HOH . E 4 HOH A 20 320 38 HOH HOH . E 4 HOH A 21 321 4 HOH HOH . E 4 HOH A 22 322 36 HOH HOH . E 4 HOH A 23 323 72 HOH HOH . E 4 HOH A 24 324 15 HOH HOH . E 4 HOH A 25 325 23 HOH HOH . E 4 HOH A 26 326 60 HOH HOH . E 4 HOH A 27 327 2 HOH HOH . E 4 HOH A 28 328 77 HOH HOH . E 4 HOH A 29 329 58 HOH HOH . E 4 HOH A 30 330 5 HOH HOH . E 4 HOH A 31 331 18 HOH HOH . E 4 HOH A 32 332 45 HOH HOH . E 4 HOH A 33 333 6 HOH HOH . E 4 HOH A 34 334 24 HOH HOH . E 4 HOH A 35 335 11 HOH HOH . E 4 HOH A 36 336 25 HOH HOH . E 4 HOH A 37 337 44 HOH HOH . E 4 HOH A 38 338 71 HOH HOH . E 4 HOH A 39 339 13 HOH HOH . E 4 HOH A 40 340 33 HOH HOH . E 4 HOH A 41 341 30 HOH HOH . E 4 HOH A 42 342 9 HOH HOH . E 4 HOH A 43 343 16 HOH HOH . E 4 HOH A 44 344 81 HOH HOH . E 4 HOH A 45 345 63 HOH HOH . E 4 HOH A 46 346 32 HOH HOH . E 4 HOH A 47 347 14 HOH HOH . E 4 HOH A 48 348 40 HOH HOH . E 4 HOH A 49 349 53 HOH HOH . E 4 HOH A 50 350 68 HOH HOH . E 4 HOH A 51 351 34 HOH HOH . E 4 HOH A 52 352 42 HOH HOH . E 4 HOH A 53 353 19 HOH HOH . E 4 HOH A 54 354 57 HOH HOH . E 4 HOH A 55 355 35 HOH HOH . E 4 HOH A 56 356 48 HOH HOH . E 4 HOH A 57 357 26 HOH HOH . E 4 HOH A 58 358 79 HOH HOH . E 4 HOH A 59 359 59 HOH HOH . E 4 HOH A 60 360 41 HOH HOH . E 4 HOH A 61 361 50 HOH HOH . E 4 HOH A 62 362 51 HOH HOH . E 4 HOH A 63 363 78 HOH HOH . E 4 HOH A 64 364 10 HOH HOH . E 4 HOH A 65 365 61 HOH HOH . E 4 HOH A 66 366 39 HOH HOH . E 4 HOH A 67 367 37 HOH HOH . E 4 HOH A 68 368 29 HOH HOH . E 4 HOH A 69 369 75 HOH HOH . E 4 HOH A 70 370 74 HOH HOH . E 4 HOH A 71 371 70 HOH HOH . E 4 HOH A 72 372 55 HOH HOH . E 4 HOH A 73 373 31 HOH HOH . E 4 HOH A 74 374 47 HOH HOH . E 4 HOH A 75 375 12 HOH HOH . E 4 HOH A 76 376 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 U3L . . . B 2 19.605 17.364 -13.214 1 56.84 ? C02 U3L 201 A 1 HETATM 2 C C03 U3L . . . B 2 19.195 17.331 -14.681 1 61.25 ? C03 U3L 201 A 1 HETATM 3 C C04 U3L . . . B 2 18.008 16.507 -15.174 1 61.07 ? C04 U3L 201 A 1 HETATM 4 C C06 U3L . . . B 2 16.101 15.126 -15.227 1 63 ? C06 U3L 201 A 1 HETATM 5 C C07 U3L . . . B 2 16.5 15.437 -16.641 1 74.84 ? C07 U3L 201 A 1 HETATM 6 C C10 U3L . . . B 2 21.14 18.904 -15.251 1 71.41 ? C10 U3L 201 A 1 HETATM 7 C C12 U3L . . . B 2 21.56 18.943 -13.788 1 61.78 ? C12 U3L 201 A 1 HETATM 8 C C13 U3L . . . B 2 20.787 18.164 -12.785 1 56.2 ? C13 U3L 201 A 1 HETATM 9 N N05 U3L . . . B 2 17.037 15.782 -14.351 1 58.84 ? N05 U3L 201 A 1 HETATM 10 N N08 U3L . . . B 2 17.673 16.275 -16.588 1 68.06 ? N08 U3L 201 A 1 HETATM 11 N N09 U3L . . . B 2 19.973 18.098 -15.673 1 66.87 ? N09 U3L 201 A 1 HETATM 12 O O01 U3L . . . B 2 18.879 16.639 -12.272 1 55.17 -1 O01 U3L 201 A 1 HETATM 13 O O14 U3L . . . B 2 21.121 18.203 -11.651 1 53.94 ? O14 U3L 201 A 1 HETATM 14 BR BR11 U3L . . . B 2 22.135 19.908 -16.577 1 128.11 ? BR11 U3L 201 A 1 HETATM 15 H H062 U3L . . . B 2 16.255 14.062 -15.094 1 75.72 ? H062 U3L 201 A 1 HETATM 16 H H061 U3L . . . B 2 15.145 15.609 -15.068 1 75.72 ? H061 U3L 201 A 1 HETATM 17 H H072 U3L . . . B 2 16.814 14.499 -17.082 1 89.93 ? H072 U3L 201 A 1 HETATM 18 H H071 U3L . . . B 2 15.707 16.047 -17.054 1 89.93 ? H071 U3L 201 A 1 HETATM 19 H H121 U3L . . . B 2 22.414 19.533 -13.479 1 74.26 ? H121 U3L 201 A 1 HETATM 20 H H081 U3L . . . B 2 18.172 16.637 -17.376 1 81.79 ? H081 U3L 201 A 1 HETATM 21 H H091 U3L . . . B 2 19.709 18.073 -16.639 1 80.36 ? H091 U3L 201 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 44 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #