data_8DKN # _model_server_result.job_id Mmpm1Ki6JWu1qEa8jYdqKw _model_server_result.datetime_utc '2024-11-24 15:33:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dkn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8DKN # _exptl.entry_id 8DKN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 277.663 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-chloro-5-nitro-N-(pyridin-4-yl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.79 _cell.angle_gamma 90 _cell.entry_id 8DKN _cell.length_a 83.208 _cell.length_b 81.89 _cell.length_c 48.146 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DKN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 81 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 313 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C03 _struct_conn.ptnr2_label_comp_id EEY _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id EEY _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.637 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H8 Cl N3 O3' _chem_comp.formula_weight 277.663 _chem_comp.id EEY _chem_comp.mon_nstd_flag . _chem_comp.name 2-chloro-5-nitro-N-(pyridin-4-yl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 EEY doub 116 n y C17 N16 EEY sing 117 n y C18 C13 EEY sing 118 n y N16 C15 EEY doub 119 n y C13 C14 EEY doub 120 n y C13 N12 EEY sing 121 n n C15 C14 EEY sing 122 n y O11 C10 EEY doub 123 n n C10 N12 EEY sing 124 n n C10 C04 EEY sing 125 n n C03 C04 EEY doub 126 n y C03 C02 EEY sing 127 n y C04 C05 EEY sing 128 n y C02 C01 EEY doub 129 n y C05 C06 EEY doub 130 n y C01 C06 EEY sing 131 n y C06 N07 EEY sing 132 n n N07 O09 EEY doub 133 n n N07 O08 EEY sing 134 n n C03 CL1 EEY sing 135 n n N12 H1 EEY sing 136 n n C15 H2 EEY sing 137 n n C17 H3 EEY sing 138 n n C01 H4 EEY sing 139 n n C02 H5 EEY sing 140 n n C05 H6 EEY sing 141 n n C14 H7 EEY sing 142 n n C18 H8 EEY sing 143 n n # _atom_sites.entry_id 8DKN _atom_sites.fract_transf_matrix[1][1] 0.012018 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002949 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012212 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EEY A 1 601 1 EEY 199 . D 4 CXS A 1 602 2 CXS CAP . E 4 CXS A 1 603 3 CXS CAP . F 5 SO4 C 1 101 1 SO4 SO4 . G 6 HOH A 1 701 34 HOH HOH . G 6 HOH A 2 702 31 HOH HOH . G 6 HOH A 3 703 35 HOH HOH . G 6 HOH A 4 704 24 HOH HOH . G 6 HOH A 5 705 19 HOH HOH . G 6 HOH A 6 706 38 HOH HOH . G 6 HOH A 7 707 10 HOH HOH . G 6 HOH A 8 708 20 HOH HOH . G 6 HOH A 9 709 40 HOH HOH . G 6 HOH A 10 710 11 HOH HOH . G 6 HOH A 11 711 9 HOH HOH . G 6 HOH A 12 712 39 HOH HOH . G 6 HOH A 13 713 4 HOH HOH . G 6 HOH A 14 714 22 HOH HOH . G 6 HOH A 15 715 21 HOH HOH . G 6 HOH A 16 716 26 HOH HOH . G 6 HOH A 17 717 18 HOH HOH . G 6 HOH A 18 718 17 HOH HOH . G 6 HOH A 19 719 12 HOH HOH . G 6 HOH A 20 720 29 HOH HOH . G 6 HOH A 21 721 13 HOH HOH . G 6 HOH A 22 722 30 HOH HOH . G 6 HOH A 23 723 37 HOH HOH . G 6 HOH A 24 724 16 HOH HOH . G 6 HOH A 25 725 3 HOH HOH . G 6 HOH A 26 726 5 HOH HOH . G 6 HOH A 27 727 8 HOH HOH . G 6 HOH A 28 728 1 HOH HOH . G 6 HOH A 29 729 7 HOH HOH . G 6 HOH A 30 730 23 HOH HOH . G 6 HOH A 31 731 14 HOH HOH . G 6 HOH A 32 732 2 HOH HOH . G 6 HOH A 33 733 32 HOH HOH . G 6 HOH A 34 734 6 HOH HOH . G 6 HOH A 35 735 15 HOH HOH . G 6 HOH A 36 736 28 HOH HOH . G 6 HOH A 37 737 27 HOH HOH . G 6 HOH A 38 738 33 HOH HOH . G 6 HOH A 39 739 25 HOH HOH . H 6 HOH C 1 201 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 EEY . . . C 3 12.978 12.033 7.298 1 40.48 ? C10 EEY 601 A 1 HETATM 2 N N12 EEY . . . C 3 12.33 10.994 6.775 1 47.52 ? N12 EEY 601 A 1 HETATM 3 C C13 EEY . . . C 3 11.866 10.864 5.498 1 53.12 ? C13 EEY 601 A 1 HETATM 4 C C15 EEY . . . C 3 11.484 11.533 3.217 1 50.5 ? C15 EEY 601 A 1 HETATM 5 C C17 EEY . . . C 3 10.71 9.476 3.908 1 51.26 ? C17 EEY 601 A 1 HETATM 6 C C01 EEY . . . C 3 13.659 12.08 11.452 1 43.06 ? C01 EEY 601 A 1 HETATM 7 C C02 EEY . . . C 3 14.772 12.158 10.61 1 38.94 ? C02 EEY 601 A 1 HETATM 8 C C03 EEY . . . C 3 14.638 12.138 9.226 1 39.82 ? C03 EEY 601 A 1 HETATM 9 C C04 EEY . . . C 3 13.321 12.038 8.715 1 42.36 ? C04 EEY 601 A 1 HETATM 10 C C05 EEY . . . C 3 12.228 11.955 9.543 1 41.01 ? C05 EEY 601 A 1 HETATM 11 C C06 EEY . . . C 3 12.381 11.956 10.9 1 45.06 ? C06 EEY 601 A 1 HETATM 12 C C14 EEY . . . C 3 11.985 11.803 4.466 1 51.55 ? C14 EEY 601 A 1 HETATM 13 C C18 EEY . . . C 3 11.208 9.69 5.185 1 52.54 ? C18 EEY 601 A 1 HETATM 14 N N07 EEY . . . C 3 11.21 11.883 11.685 1 53.37 ? N07 EEY 601 A 1 HETATM 15 N N16 EEY . . . C 3 10.88 10.382 2.959 1 50.58 ? N16 EEY 601 A 1 HETATM 16 O O08 EEY . . . C 3 11.322 12.261 13.007 1 70.19 ? O08 EEY 601 A 1 HETATM 17 O O09 EEY . . . C 3 9.925 11.554 11.189 1 68.71 ? O09 EEY 601 A 1 HETATM 18 O O11 EEY . . . C 3 13.3 13.026 6.721 1 46.61 ? O11 EEY 601 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #