data_8DKO # _model_server_result.job_id sb3yKML5Hd9IGTWoQGBZIQ _model_server_result.datetime_utc '2024-11-24 13:28:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dko # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2002}' # _entry.id 8DKO # _exptl.entry_id 8DKO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 116.115 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAHYDROFURAN-2-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 104.02 _cell.angle_beta 100.5 _cell.angle_gamma 108.86 _cell.entry_id 8DKO _cell.length_a 48.98 _cell.length_b 54.232 _cell.length_c 76.191 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C5 H8 O3' _chem_comp.formula_weight 116.115 _chem_comp.id TFB _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAHYDROFURAN-2-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OA CA TFB sing 381 n n OA CD TFB sing 382 n n CA C TFB sing 383 n n CA CB TFB sing 384 n n CA HA TFB sing 385 n n C OB TFB sing 386 n n C OXT TFB doub 387 n n OB HB TFB sing 388 n n CB CG TFB sing 389 n n CB HB1 TFB sing 390 n n CB HB2 TFB sing 391 n n CG CD TFB sing 392 n n CG HG1 TFB sing 393 n n CG HG2 TFB sing 394 n n CD HD1 TFB sing 395 n n CD HD2 TFB sing 396 n n # _atom_sites.entry_id 8DKO _atom_sites.fract_transf_matrix[1][1] 0.020416 _atom_sites.fract_transf_matrix[1][2] 0.006973 _atom_sites.fract_transf_matrix[1][3] 0.006384 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019485 _atom_sites.fract_transf_matrix[2][3] 0.006666 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014108 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 2001 2001 FAD FAD . D 3 TFB A 1 2002 2002 TFB TFB . E 2 FAD B 1 2001 2001 FAD FAD . F 3 TFB B 1 2002 2002 TFB TFB . G 4 HOH A 1 2101 213 HOH HOH . G 4 HOH A 2 2102 232 HOH HOH . G 4 HOH A 3 2103 257 HOH HOH . G 4 HOH A 4 2104 281 HOH HOH . G 4 HOH A 5 2105 275 HOH HOH . G 4 HOH A 6 2106 179 HOH HOH . G 4 HOH A 7 2107 189 HOH HOH . G 4 HOH A 8 2108 240 HOH HOH . G 4 HOH A 9 2109 32 HOH HOH . G 4 HOH A 10 2110 200 HOH HOH . G 4 HOH A 11 2111 188 HOH HOH . G 4 HOH A 12 2112 192 HOH HOH . G 4 HOH A 13 2113 159 HOH HOH . G 4 HOH A 14 2114 39 HOH HOH . G 4 HOH A 15 2115 209 HOH HOH . G 4 HOH A 16 2116 112 HOH HOH . G 4 HOH A 17 2117 25 HOH HOH . G 4 HOH A 18 2118 221 HOH HOH . G 4 HOH A 19 2119 129 HOH HOH . G 4 HOH A 20 2120 173 HOH HOH . G 4 HOH A 21 2121 103 HOH HOH . G 4 HOH A 22 2122 8 HOH HOH . G 4 HOH A 23 2123 74 HOH HOH . G 4 HOH A 24 2124 108 HOH HOH . G 4 HOH A 25 2125 152 HOH HOH . G 4 HOH A 26 2126 201 HOH HOH . G 4 HOH A 27 2127 45 HOH HOH . G 4 HOH A 28 2128 187 HOH HOH . G 4 HOH A 29 2129 77 HOH HOH . G 4 HOH A 30 2130 5 HOH HOH . G 4 HOH A 31 2131 163 HOH HOH . G 4 HOH A 32 2132 176 HOH HOH . G 4 HOH A 33 2133 223 HOH HOH . G 4 HOH A 34 2134 12 HOH HOH . G 4 HOH A 35 2135 27 HOH HOH . G 4 HOH A 36 2136 50 HOH HOH . G 4 HOH A 37 2137 259 HOH HOH . G 4 HOH A 38 2138 101 HOH HOH . G 4 HOH A 39 2139 106 HOH HOH . G 4 HOH A 40 2140 17 HOH HOH . G 4 HOH A 41 2141 277 HOH HOH . G 4 HOH A 42 2142 35 HOH HOH . G 4 HOH A 43 2143 78 HOH HOH . G 4 HOH A 44 2144 3 HOH HOH . G 4 HOH A 45 2145 9 HOH HOH . G 4 HOH A 46 2146 54 HOH HOH . G 4 HOH A 47 2147 212 HOH HOH . G 4 HOH A 48 2148 248 HOH HOH . G 4 HOH A 49 2149 51 HOH HOH . G 4 HOH A 50 2150 53 HOH HOH . G 4 HOH A 51 2151 56 HOH HOH . G 4 HOH A 52 2152 167 HOH HOH . G 4 HOH A 53 2153 161 HOH HOH . G 4 HOH A 54 2154 186 HOH HOH . G 4 HOH A 55 2155 2 HOH HOH . G 4 HOH A 56 2156 64 HOH HOH . G 4 HOH A 57 2157 261 HOH HOH . G 4 HOH A 58 2158 216 HOH HOH . G 4 HOH A 59 2159 79 HOH HOH . G 4 HOH A 60 2160 69 HOH HOH . G 4 HOH A 61 2161 122 HOH HOH . G 4 HOH A 62 2162 115 HOH HOH . G 4 HOH A 63 2163 198 HOH HOH . G 4 HOH A 64 2164 128 HOH HOH . G 4 HOH A 65 2165 203 HOH HOH . G 4 HOH A 66 2166 75 HOH HOH . G 4 HOH A 67 2167 125 HOH HOH . G 4 HOH A 68 2168 157 HOH HOH . G 4 HOH A 69 2169 24 HOH HOH . G 4 HOH A 70 2170 177 HOH HOH . G 4 HOH A 71 2171 34 HOH HOH . G 4 HOH A 72 2172 88 HOH HOH . G 4 HOH A 73 2173 60 HOH HOH . G 4 HOH A 74 2174 84 HOH HOH . G 4 HOH A 75 2175 243 HOH HOH . G 4 HOH A 76 2176 244 HOH HOH . G 4 HOH A 77 2177 202 HOH HOH . G 4 HOH A 78 2178 71 HOH HOH . G 4 HOH A 79 2179 117 HOH HOH . G 4 HOH A 80 2180 52 HOH HOH . G 4 HOH A 81 2181 123 HOH HOH . G 4 HOH A 82 2182 249 HOH HOH . G 4 HOH A 83 2183 82 HOH HOH . G 4 HOH A 84 2184 151 HOH HOH . G 4 HOH A 85 2185 38 HOH HOH . G 4 HOH A 86 2186 81 HOH HOH . G 4 HOH A 87 2187 184 HOH HOH . G 4 HOH A 88 2188 55 HOH HOH . G 4 HOH A 89 2189 104 HOH HOH . G 4 HOH A 90 2190 30 HOH HOH . G 4 HOH A 91 2191 48 HOH HOH . G 4 HOH A 92 2192 148 HOH HOH . G 4 HOH A 93 2193 111 HOH HOH . G 4 HOH A 94 2194 92 HOH HOH . G 4 HOH A 95 2195 156 HOH HOH . G 4 HOH A 96 2196 119 HOH HOH . G 4 HOH A 97 2197 116 HOH HOH . G 4 HOH A 98 2198 97 HOH HOH . G 4 HOH A 99 2199 262 HOH HOH . G 4 HOH A 100 2200 126 HOH HOH . G 4 HOH A 101 2201 121 HOH HOH . G 4 HOH A 102 2202 37 HOH HOH . G 4 HOH A 103 2203 63 HOH HOH . G 4 HOH A 104 2204 255 HOH HOH . G 4 HOH A 105 2205 284 HOH HOH . G 4 HOH A 106 2206 222 HOH HOH . G 4 HOH A 107 2207 57 HOH HOH . G 4 HOH A 108 2208 100 HOH HOH . G 4 HOH A 109 2209 271 HOH HOH . G 4 HOH A 110 2210 136 HOH HOH . G 4 HOH A 111 2211 246 HOH HOH . G 4 HOH A 112 2212 181 HOH HOH . G 4 HOH A 113 2213 83 HOH HOH . G 4 HOH A 114 2214 241 HOH HOH . G 4 HOH A 115 2215 204 HOH HOH . G 4 HOH A 116 2216 59 HOH HOH . G 4 HOH A 117 2217 98 HOH HOH . G 4 HOH A 118 2218 58 HOH HOH . G 4 HOH A 119 2219 107 HOH HOH . G 4 HOH A 120 2220 13 HOH HOH . G 4 HOH A 121 2221 138 HOH HOH . G 4 HOH A 122 2222 89 HOH HOH . G 4 HOH A 123 2223 20 HOH HOH . G 4 HOH A 124 2224 174 HOH HOH . G 4 HOH A 125 2225 237 HOH HOH . G 4 HOH A 126 2226 120 HOH HOH . G 4 HOH A 127 2227 127 HOH HOH . G 4 HOH A 128 2228 265 HOH HOH . G 4 HOH A 129 2229 76 HOH HOH . G 4 HOH A 130 2230 260 HOH HOH . G 4 HOH A 131 2231 62 HOH HOH . G 4 HOH A 132 2232 135 HOH HOH . G 4 HOH A 133 2233 182 HOH HOH . G 4 HOH A 134 2234 154 HOH HOH . G 4 HOH A 135 2235 238 HOH HOH . G 4 HOH A 136 2236 286 HOH HOH . G 4 HOH A 137 2237 183 HOH HOH . G 4 HOH A 138 2238 133 HOH HOH . G 4 HOH A 139 2239 267 HOH HOH . G 4 HOH A 140 2240 175 HOH HOH . G 4 HOH A 141 2241 268 HOH HOH . G 4 HOH A 142 2242 263 HOH HOH . G 4 HOH A 143 2243 264 HOH HOH . H 4 HOH B 1 2101 196 HOH HOH . H 4 HOH B 2 2102 234 HOH HOH . H 4 HOH B 3 2103 141 HOH HOH . H 4 HOH B 4 2104 191 HOH HOH . H 4 HOH B 5 2105 270 HOH HOH . H 4 HOH B 6 2106 29 HOH HOH . H 4 HOH B 7 2107 194 HOH HOH . H 4 HOH B 8 2108 91 HOH HOH . H 4 HOH B 9 2109 199 HOH HOH . H 4 HOH B 10 2110 230 HOH HOH . H 4 HOH B 11 2111 210 HOH HOH . H 4 HOH B 12 2112 162 HOH HOH . H 4 HOH B 13 2113 256 HOH HOH . H 4 HOH B 14 2114 146 HOH HOH . H 4 HOH B 15 2115 287 HOH HOH . H 4 HOH B 16 2116 21 HOH HOH . H 4 HOH B 17 2117 273 HOH HOH . H 4 HOH B 18 2118 33 HOH HOH . H 4 HOH B 19 2119 85 HOH HOH . H 4 HOH B 20 2120 190 HOH HOH . H 4 HOH B 21 2121 1 HOH HOH . H 4 HOH B 22 2122 14 HOH HOH . H 4 HOH B 23 2123 44 HOH HOH . H 4 HOH B 24 2124 247 HOH HOH . H 4 HOH B 25 2125 218 HOH HOH . H 4 HOH B 26 2126 233 HOH HOH . H 4 HOH B 27 2127 211 HOH HOH . H 4 HOH B 28 2128 150 HOH HOH . H 4 HOH B 29 2129 95 HOH HOH . H 4 HOH B 30 2130 10 HOH HOH . H 4 HOH B 31 2131 236 HOH HOH . H 4 HOH B 32 2132 102 HOH HOH . H 4 HOH B 33 2133 197 HOH HOH . H 4 HOH B 34 2134 96 HOH HOH . H 4 HOH B 35 2135 16 HOH HOH . H 4 HOH B 36 2136 193 HOH HOH . H 4 HOH B 37 2137 155 HOH HOH . H 4 HOH B 38 2138 226 HOH HOH . H 4 HOH B 39 2139 42 HOH HOH . H 4 HOH B 40 2140 4 HOH HOH . H 4 HOH B 41 2141 214 HOH HOH . H 4 HOH B 42 2142 170 HOH HOH . H 4 HOH B 43 2143 26 HOH HOH . H 4 HOH B 44 2144 145 HOH HOH . H 4 HOH B 45 2145 250 HOH HOH . H 4 HOH B 46 2146 139 HOH HOH . H 4 HOH B 47 2147 68 HOH HOH . H 4 HOH B 48 2148 266 HOH HOH . H 4 HOH B 49 2149 72 HOH HOH . H 4 HOH B 50 2150 206 HOH HOH . H 4 HOH B 51 2151 31 HOH HOH . H 4 HOH B 52 2152 19 HOH HOH . H 4 HOH B 53 2153 149 HOH HOH . H 4 HOH B 54 2154 220 HOH HOH . H 4 HOH B 55 2155 165 HOH HOH . H 4 HOH B 56 2156 272 HOH HOH . H 4 HOH B 57 2157 22 HOH HOH . H 4 HOH B 58 2158 15 HOH HOH . H 4 HOH B 59 2159 195 HOH HOH . H 4 HOH B 60 2160 229 HOH HOH . H 4 HOH B 61 2161 137 HOH HOH . H 4 HOH B 62 2162 158 HOH HOH . H 4 HOH B 63 2163 65 HOH HOH . H 4 HOH B 64 2164 87 HOH HOH . H 4 HOH B 65 2165 6 HOH HOH . H 4 HOH B 66 2166 80 HOH HOH . H 4 HOH B 67 2167 47 HOH HOH . H 4 HOH B 68 2168 36 HOH HOH . H 4 HOH B 69 2169 40 HOH HOH . H 4 HOH B 70 2170 140 HOH HOH . H 4 HOH B 71 2171 11 HOH HOH . H 4 HOH B 72 2172 217 HOH HOH . H 4 HOH B 73 2173 46 HOH HOH . H 4 HOH B 74 2174 147 HOH HOH . H 4 HOH B 75 2175 164 HOH HOH . H 4 HOH B 76 2176 67 HOH HOH . H 4 HOH B 77 2177 41 HOH HOH . H 4 HOH B 78 2178 251 HOH HOH . H 4 HOH B 79 2179 276 HOH HOH . H 4 HOH B 80 2180 94 HOH HOH . H 4 HOH B 81 2181 227 HOH HOH . H 4 HOH B 82 2182 285 HOH HOH . H 4 HOH B 83 2183 28 HOH HOH . H 4 HOH B 84 2184 253 HOH HOH . H 4 HOH B 85 2185 86 HOH HOH . H 4 HOH B 86 2186 43 HOH HOH . H 4 HOH B 87 2187 224 HOH HOH . H 4 HOH B 88 2188 118 HOH HOH . H 4 HOH B 89 2189 171 HOH HOH . H 4 HOH B 90 2190 235 HOH HOH . H 4 HOH B 91 2191 283 HOH HOH . H 4 HOH B 92 2192 131 HOH HOH . H 4 HOH B 93 2193 114 HOH HOH . H 4 HOH B 94 2194 61 HOH HOH . H 4 HOH B 95 2195 105 HOH HOH . H 4 HOH B 96 2196 23 HOH HOH . H 4 HOH B 97 2197 90 HOH HOH . H 4 HOH B 98 2198 124 HOH HOH . H 4 HOH B 99 2199 49 HOH HOH . H 4 HOH B 100 2200 258 HOH HOH . H 4 HOH B 101 2201 7 HOH HOH . H 4 HOH B 102 2202 110 HOH HOH . H 4 HOH B 103 2203 73 HOH HOH . H 4 HOH B 104 2204 274 HOH HOH . H 4 HOH B 105 2205 18 HOH HOH . H 4 HOH B 106 2206 239 HOH HOH . H 4 HOH B 107 2207 252 HOH HOH . H 4 HOH B 108 2208 254 HOH HOH . H 4 HOH B 109 2209 231 HOH HOH . H 4 HOH B 110 2210 219 HOH HOH . H 4 HOH B 111 2211 169 HOH HOH . H 4 HOH B 112 2212 180 HOH HOH . H 4 HOH B 113 2213 280 HOH HOH . H 4 HOH B 114 2214 225 HOH HOH . H 4 HOH B 115 2215 66 HOH HOH . H 4 HOH B 116 2216 215 HOH HOH . H 4 HOH B 117 2217 245 HOH HOH . H 4 HOH B 118 2218 113 HOH HOH . H 4 HOH B 119 2219 166 HOH HOH . H 4 HOH B 120 2220 228 HOH HOH . H 4 HOH B 121 2221 208 HOH HOH . H 4 HOH B 122 2222 99 HOH HOH . H 4 HOH B 123 2223 207 HOH HOH . H 4 HOH B 124 2224 278 HOH HOH . H 4 HOH B 125 2225 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OA TFB . . . D 3 13.977 15.704 47.782 1 27.08 ? OA TFB 2002 A 1 HETATM 2 C CA TFB . . . D 3 14.808 16.42 46.882 1 24.32 ? CA TFB 2002 A 1 HETATM 3 C C TFB . . . D 3 15.34 15.377 45.896 1 26.47 ? C TFB 2002 A 1 HETATM 4 O OB TFB . . . D 3 15.219 14.148 46.164 1 28.39 ? OB TFB 2002 A 1 HETATM 5 C CB TFB . . . D 3 15.955 17.054 47.604 1 23.61 ? CB TFB 2002 A 1 HETATM 6 C CG TFB . . . D 3 16.003 16.356 48.933 1 23.22 ? CG TFB 2002 A 1 HETATM 7 C CD TFB . . . D 3 14.681 15.591 49.035 1 24.54 ? CD TFB 2002 A 1 HETATM 8 O OXT TFB . . . D 3 15.912 15.749 44.841 1 26.08 ? OXT TFB 2002 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #