data_8DKY
#
_model_server_result.job_id            kIi69z0cTvHkSUuwQa0R7w 
_model_server_result.datetime_utc      '2024-11-21 13:52:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dky 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    8DKY 
#
_exptl.entry_id    8DKY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              194.182 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-O-methyl-alpha-D-mannopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DKY 
_cell.length_a            56.561 
_cell.length_b            58.169 
_cell.length_c            95.316 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DKY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C7 H14 O6' 
_chem_comp.formula_weight    194.182 
_chem_comp.id                U90 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-O-methyl-alpha-D-mannopyranose 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O6' C6' U90 sing 358 n n 
O4' C4' U90 sing 359 n n 
C6' C5' U90 sing 360 n n 
C5' C4' U90 sing 361 n n 
C5' O5' U90 sing 362 n n 
C4' C3' U90 sing 363 n n 
C3' O3' U90 sing 364 n n 
C3' C2' U90 sing 365 n n 
O5' C1' U90 sing 366 n n 
O3' C7' U90 sing 367 n n 
O1' C1' U90 sing 368 n n 
C1' C2' U90 sing 369 n n 
C2' O2' U90 sing 370 n n 
C1' H1 U90 sing 371 n n 
C2' H2 U90 sing 372 n n 
C3' H3 U90 sing 373 n n 
C4' H4 U90 sing 374 n n 
C5' H5 U90 sing 375 n n 
C6' H6 U90 sing 376 n n 
C6' H7 U90 sing 377 n n 
C7' H8 U90 sing 378 n n 
C7' H9 U90 sing 379 n n 
C7' H10 U90 sing 380 n n 
O1' H11 U90 sing 381 n n 
O2' H12 U90 sing 382 n n 
O4' H13 U90 sing 383 n n 
O6' H14 U90 sing 384 n n 
#
_atom_sites.entry_id                     8DKY 
_atom_sites.fract_transf_matrix[1][1]    0.01768 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017191 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010491 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 U90 A 1 401 1 U90 LIG . 
D 2 U90 B 1 401 2 U90 LIG . 
E 3 HOH A 1 501 176 HOH HOH . 
E 3 HOH A 2 502 199 HOH HOH . 
E 3 HOH A 3 503 170 HOH HOH . 
E 3 HOH A 4 504 200 HOH HOH . 
E 3 HOH A 5 505 20 HOH HOH . 
E 3 HOH A 6 506 33 HOH HOH . 
E 3 HOH A 7 507 171 HOH HOH . 
E 3 HOH A 8 508 167 HOH HOH . 
E 3 HOH A 9 509 132 HOH HOH . 
E 3 HOH A 10 510 196 HOH HOH . 
E 3 HOH A 11 511 143 HOH HOH . 
E 3 HOH A 12 512 50 HOH HOH . 
E 3 HOH A 13 513 9 HOH HOH . 
E 3 HOH A 14 514 13 HOH HOH . 
E 3 HOH A 15 515 3 HOH HOH . 
E 3 HOH A 16 516 21 HOH HOH . 
E 3 HOH A 17 517 102 HOH HOH . 
E 3 HOH A 18 518 32 HOH HOH . 
E 3 HOH A 19 519 18 HOH HOH . 
E 3 HOH A 20 520 91 HOH HOH . 
E 3 HOH A 21 521 74 HOH HOH . 
E 3 HOH A 22 522 43 HOH HOH . 
E 3 HOH A 23 523 16 HOH HOH . 
E 3 HOH A 24 524 25 HOH HOH . 
E 3 HOH A 25 525 56 HOH HOH . 
E 3 HOH A 26 526 94 HOH HOH . 
E 3 HOH A 27 527 72 HOH HOH . 
E 3 HOH A 28 528 78 HOH HOH . 
E 3 HOH A 29 529 5 HOH HOH . 
E 3 HOH A 30 530 198 HOH HOH . 
E 3 HOH A 31 531 174 HOH HOH . 
E 3 HOH A 32 532 39 HOH HOH . 
E 3 HOH A 33 533 126 HOH HOH . 
E 3 HOH A 34 534 173 HOH HOH . 
E 3 HOH A 35 535 96 HOH HOH . 
E 3 HOH A 36 536 15 HOH HOH . 
E 3 HOH A 37 537 60 HOH HOH . 
E 3 HOH A 38 538 49 HOH HOH . 
E 3 HOH A 39 539 133 HOH HOH . 
E 3 HOH A 40 540 11 HOH HOH . 
E 3 HOH A 41 541 42 HOH HOH . 
E 3 HOH A 42 542 115 HOH HOH . 
E 3 HOH A 43 543 6 HOH HOH . 
E 3 HOH A 44 544 93 HOH HOH . 
E 3 HOH A 45 545 152 HOH HOH . 
E 3 HOH A 46 546 79 HOH HOH . 
E 3 HOH A 47 547 46 HOH HOH . 
E 3 HOH A 48 548 188 HOH HOH . 
E 3 HOH A 49 549 108 HOH HOH . 
E 3 HOH A 50 550 154 HOH HOH . 
E 3 HOH A 51 551 177 HOH HOH . 
E 3 HOH A 52 552 190 HOH HOH . 
E 3 HOH A 53 553 129 HOH HOH . 
E 3 HOH A 54 554 87 HOH HOH . 
E 3 HOH A 55 555 140 HOH HOH . 
E 3 HOH A 56 556 191 HOH HOH . 
E 3 HOH A 57 557 100 HOH HOH . 
E 3 HOH A 58 558 64 HOH HOH . 
E 3 HOH A 59 559 116 HOH HOH . 
E 3 HOH A 60 560 38 HOH HOH . 
E 3 HOH A 61 561 151 HOH HOH . 
E 3 HOH A 62 562 120 HOH HOH . 
E 3 HOH A 63 563 23 HOH HOH . 
E 3 HOH A 64 564 88 HOH HOH . 
E 3 HOH A 65 565 159 HOH HOH . 
E 3 HOH A 66 566 109 HOH HOH . 
E 3 HOH A 67 567 113 HOH HOH . 
E 3 HOH A 68 568 184 HOH HOH . 
E 3 HOH A 69 569 166 HOH HOH . 
E 3 HOH A 70 570 189 HOH HOH . 
E 3 HOH A 71 571 107 HOH HOH . 
E 3 HOH A 72 572 110 HOH HOH . 
F 3 HOH B 1 501 76 HOH HOH . 
F 3 HOH B 2 502 66 HOH HOH . 
F 3 HOH B 3 503 51 HOH HOH . 
F 3 HOH B 4 504 27 HOH HOH . 
F 3 HOH B 5 505 165 HOH HOH . 
F 3 HOH B 6 506 22 HOH HOH . 
F 3 HOH B 7 507 31 HOH HOH . 
F 3 HOH B 8 508 45 HOH HOH . 
F 3 HOH B 9 509 128 HOH HOH . 
F 3 HOH B 10 510 24 HOH HOH . 
F 3 HOH B 11 511 35 HOH HOH . 
F 3 HOH B 12 512 17 HOH HOH . 
F 3 HOH B 13 513 19 HOH HOH . 
F 3 HOH B 14 514 52 HOH HOH . 
F 3 HOH B 15 515 2 HOH HOH . 
F 3 HOH B 16 516 70 HOH HOH . 
F 3 HOH B 17 517 44 HOH HOH . 
F 3 HOH B 18 518 8 HOH HOH . 
F 3 HOH B 19 519 83 HOH HOH . 
F 3 HOH B 20 520 202 HOH HOH . 
F 3 HOH B 21 521 127 HOH HOH . 
F 3 HOH B 22 522 4 HOH HOH . 
F 3 HOH B 23 523 114 HOH HOH . 
F 3 HOH B 24 524 80 HOH HOH . 
F 3 HOH B 25 525 37 HOH HOH . 
F 3 HOH B 26 526 183 HOH HOH . 
F 3 HOH B 27 527 54 HOH HOH . 
F 3 HOH B 28 528 1 HOH HOH . 
F 3 HOH B 29 529 36 HOH HOH . 
F 3 HOH B 30 530 71 HOH HOH . 
F 3 HOH B 31 531 58 HOH HOH . 
F 3 HOH B 32 532 81 HOH HOH . 
F 3 HOH B 33 533 131 HOH HOH . 
F 3 HOH B 34 534 104 HOH HOH . 
F 3 HOH B 35 535 101 HOH HOH . 
F 3 HOH B 36 536 84 HOH HOH . 
F 3 HOH B 37 537 40 HOH HOH . 
F 3 HOH B 38 538 119 HOH HOH . 
F 3 HOH B 39 539 179 HOH HOH . 
F 3 HOH B 40 540 98 HOH HOH . 
F 3 HOH B 41 541 59 HOH HOH . 
F 3 HOH B 42 542 169 HOH HOH . 
F 3 HOH B 43 543 125 HOH HOH . 
F 3 HOH B 44 544 158 HOH HOH . 
F 3 HOH B 45 545 160 HOH HOH . 
F 3 HOH B 46 546 122 HOH HOH . 
F 3 HOH B 47 547 141 HOH HOH . 
F 3 HOH B 48 548 192 HOH HOH . 
F 3 HOH B 49 549 92 HOH HOH . 
F 3 HOH B 50 550 41 HOH HOH . 
F 3 HOH B 51 551 142 HOH HOH . 
F 3 HOH B 52 552 34 HOH HOH . 
F 3 HOH B 53 553 103 HOH HOH . 
F 3 HOH B 54 554 193 HOH HOH . 
F 3 HOH B 55 555 201 HOH HOH . 
F 3 HOH B 56 556 105 HOH HOH . 
F 3 HOH B 57 557 149 HOH HOH . 
F 3 HOH B 58 558 187 HOH HOH . 
F 3 HOH B 59 559 194 HOH HOH . 
F 3 HOH B 60 560 148 HOH HOH . 
F 3 HOH B 61 561 155 HOH HOH . 
F 3 HOH B 62 562 138 HOH HOH . 
F 3 HOH B 63 563 121 HOH HOH . 
F 3 HOH B 64 564 89 HOH HOH . 
F 3 HOH B 65 565 77 HOH HOH . 
F 3 HOH B 66 566 117 HOH HOH . 
F 3 HOH B 67 567 95 HOH HOH . 
F 3 HOH B 68 568 145 HOH HOH . 
F 3 HOH B 69 569 147 HOH HOH . 
F 3 HOH B 70 570 97 HOH HOH . 
F 3 HOH B 71 571 111 HOH HOH . 
F 3 HOH B 72 572 156 HOH HOH . 
F 3 HOH B 73 573 134 HOH HOH . 
F 3 HOH B 74 574 162 HOH HOH . 
F 3 HOH B 75 575 99 HOH HOH . 
F 3 HOH B 76 576 197 HOH HOH . 
F 3 HOH B 77 577 135 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1' U90 . . . D 2 -4.078 -8.241 -26.322 1 24.97 ? C1' U90 401 B 1 
HETATM 2 C C2' U90 . . . D 2 -2.652 -7.832 -26.428 1 23.39 ? C2' U90 401 B 1 
HETATM 3 C C3' U90 . . . D 2 -1.96 -7.851 -25.157 1 23.49 ? C3' U90 401 B 1 
HETATM 4 C C4' U90 . . . D 2 -2.643 -7.015 -24.154 1 22.86 ? C4' U90 401 B 1 
HETATM 5 C C5' U90 . . . D 2 -4.094 -7.484 -23.934 1 23.8 ? C5' U90 401 B 1 
HETATM 6 C C6' U90 . . . D 2 -4.773 -6.621 -23.057 1 24.65 ? C6' U90 401 B 1 
HETATM 7 C C7' U90 . . . D 2 0.346 -8.247 -25.817 1 24.8 ? C7' U90 401 B 1 
HETATM 8 O O1' U90 . . . D 2 -4.147 -9.588 -26.026 1 26.76 ? O1' U90 401 B 1 
HETATM 9 O O2' U90 . . . D 2 -2.602 -6.466 -26.953 1 22.33 ? O2' U90 401 B 1 
HETATM 10 O O3' U90 . . . D 2 -0.608 -7.323 -25.387 1 25.23 ? O3' U90 401 B 1 
HETATM 11 O O4' U90 . . . D 2 -2.007 -7.193 -22.905 1 24.37 ? O4' U90 401 B 1 
HETATM 12 O O5' U90 . . . D 2 -4.797 -7.518 -25.281 1 24.21 ? O5' U90 401 B 1 
HETATM 13 O O6' U90 . . . D 2 -6.059 -7.142 -22.922 1 25.15 ? O6' U90 401 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           13 
#