data_8DL4 # _model_server_result.job_id nojDD2w6K1eoJXdOuLJ6Kg _model_server_result.datetime_utc '2024-10-16 10:30:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dl4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 8DL4 # _exptl.entry_id 8DL4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.3 _cell.angle_gamma 90 _cell.entry_id 8DL4 _cell.length_a 76.392 _cell.length_b 64.379 _cell.length_c 81.003 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DL4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 470 A CYS 470 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N2 SKX . A SKX 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 8DL4 _atom_sites.fract_transf_matrix[1][1] 0.01309 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00191 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 601 HEM HEM . C 3 SKX A 1 602 701 SKX 511 . D 4 1PE A 1 603 702 1PE 1PE . E 5 BGC A 1 604 703 BGC GLC . F 6 HOH A 1 701 94 HOH HOH . F 6 HOH A 2 702 226 HOH HOH . F 6 HOH A 3 703 119 HOH HOH . F 6 HOH A 4 704 179 HOH HOH . F 6 HOH A 5 705 229 HOH HOH . F 6 HOH A 6 706 234 HOH HOH . F 6 HOH A 7 707 237 HOH HOH . F 6 HOH A 8 708 43 HOH HOH . F 6 HOH A 9 709 79 HOH HOH . F 6 HOH A 10 710 205 HOH HOH . F 6 HOH A 11 711 22 HOH HOH . F 6 HOH A 12 712 211 HOH HOH . F 6 HOH A 13 713 39 HOH HOH . F 6 HOH A 14 714 12 HOH HOH . F 6 HOH A 15 715 100 HOH HOH . F 6 HOH A 16 716 124 HOH HOH . F 6 HOH A 17 717 11 HOH HOH . F 6 HOH A 18 718 5 HOH HOH . F 6 HOH A 19 719 9 HOH HOH . F 6 HOH A 20 720 233 HOH HOH . F 6 HOH A 21 721 140 HOH HOH . F 6 HOH A 22 722 126 HOH HOH . F 6 HOH A 23 723 56 HOH HOH . F 6 HOH A 24 724 83 HOH HOH . F 6 HOH A 25 725 32 HOH HOH . F 6 HOH A 26 726 116 HOH HOH . F 6 HOH A 27 727 54 HOH HOH . F 6 HOH A 28 728 166 HOH HOH . F 6 HOH A 29 729 180 HOH HOH . F 6 HOH A 30 730 153 HOH HOH . F 6 HOH A 31 731 59 HOH HOH . F 6 HOH A 32 732 57 HOH HOH . F 6 HOH A 33 733 4 HOH HOH . F 6 HOH A 34 734 44 HOH HOH . F 6 HOH A 35 735 129 HOH HOH . F 6 HOH A 36 736 70 HOH HOH . F 6 HOH A 37 737 55 HOH HOH . F 6 HOH A 38 738 109 HOH HOH . F 6 HOH A 39 739 33 HOH HOH . F 6 HOH A 40 740 51 HOH HOH . F 6 HOH A 41 741 49 HOH HOH . F 6 HOH A 42 742 65 HOH HOH . F 6 HOH A 43 743 61 HOH HOH . F 6 HOH A 44 744 167 HOH HOH . F 6 HOH A 45 745 14 HOH HOH . F 6 HOH A 46 746 101 HOH HOH . F 6 HOH A 47 747 148 HOH HOH . F 6 HOH A 48 748 146 HOH HOH . F 6 HOH A 49 749 1 HOH HOH . F 6 HOH A 50 750 121 HOH HOH . F 6 HOH A 51 751 7 HOH HOH . F 6 HOH A 52 752 41 HOH HOH . F 6 HOH A 53 753 90 HOH HOH . F 6 HOH A 54 754 64 HOH HOH . F 6 HOH A 55 755 221 HOH HOH . F 6 HOH A 56 756 158 HOH HOH . F 6 HOH A 57 757 46 HOH HOH . F 6 HOH A 58 758 6 HOH HOH . F 6 HOH A 59 759 30 HOH HOH . F 6 HOH A 60 760 186 HOH HOH . F 6 HOH A 61 761 3 HOH HOH . F 6 HOH A 62 762 149 HOH HOH . F 6 HOH A 63 763 72 HOH HOH . F 6 HOH A 64 764 155 HOH HOH . F 6 HOH A 65 765 69 HOH HOH . F 6 HOH A 66 766 217 HOH HOH . F 6 HOH A 67 767 106 HOH HOH . F 6 HOH A 68 768 85 HOH HOH . F 6 HOH A 69 769 89 HOH HOH . F 6 HOH A 70 770 53 HOH HOH . F 6 HOH A 71 771 58 HOH HOH . F 6 HOH A 72 772 97 HOH HOH . F 6 HOH A 73 773 223 HOH HOH . F 6 HOH A 74 774 130 HOH HOH . F 6 HOH A 75 775 215 HOH HOH . F 6 HOH A 76 776 123 HOH HOH . F 6 HOH A 77 777 174 HOH HOH . F 6 HOH A 78 778 35 HOH HOH . F 6 HOH A 79 779 50 HOH HOH . F 6 HOH A 80 780 8 HOH HOH . F 6 HOH A 81 781 203 HOH HOH . F 6 HOH A 82 782 92 HOH HOH . F 6 HOH A 83 783 210 HOH HOH . F 6 HOH A 84 784 214 HOH HOH . F 6 HOH A 85 785 21 HOH HOH . F 6 HOH A 86 786 68 HOH HOH . F 6 HOH A 87 787 213 HOH HOH . F 6 HOH A 88 788 86 HOH HOH . F 6 HOH A 89 789 29 HOH HOH . F 6 HOH A 90 790 98 HOH HOH . F 6 HOH A 91 791 34 HOH HOH . F 6 HOH A 92 792 17 HOH HOH . F 6 HOH A 93 793 42 HOH HOH . F 6 HOH A 94 794 231 HOH HOH . F 6 HOH A 95 795 76 HOH HOH . F 6 HOH A 96 796 63 HOH HOH . F 6 HOH A 97 797 45 HOH HOH . F 6 HOH A 98 798 75 HOH HOH . F 6 HOH A 99 799 131 HOH HOH . F 6 HOH A 100 800 230 HOH HOH . F 6 HOH A 101 801 28 HOH HOH . F 6 HOH A 102 802 122 HOH HOH . F 6 HOH A 103 803 95 HOH HOH . F 6 HOH A 104 804 52 HOH HOH . F 6 HOH A 105 805 15 HOH HOH . F 6 HOH A 106 806 114 HOH HOH . F 6 HOH A 107 807 37 HOH HOH . F 6 HOH A 108 808 25 HOH HOH . F 6 HOH A 109 809 120 HOH HOH . F 6 HOH A 110 810 111 HOH HOH . F 6 HOH A 111 811 141 HOH HOH . F 6 HOH A 112 812 99 HOH HOH . F 6 HOH A 113 813 26 HOH HOH . F 6 HOH A 114 814 23 HOH HOH . F 6 HOH A 115 815 128 HOH HOH . F 6 HOH A 116 816 71 HOH HOH . F 6 HOH A 117 817 143 HOH HOH . F 6 HOH A 118 818 134 HOH HOH . F 6 HOH A 119 819 38 HOH HOH . F 6 HOH A 120 820 31 HOH HOH . F 6 HOH A 121 821 152 HOH HOH . F 6 HOH A 122 822 40 HOH HOH . F 6 HOH A 123 823 19 HOH HOH . F 6 HOH A 124 824 102 HOH HOH . F 6 HOH A 125 825 74 HOH HOH . F 6 HOH A 126 826 10 HOH HOH . F 6 HOH A 127 827 198 HOH HOH . F 6 HOH A 128 828 222 HOH HOH . F 6 HOH A 129 829 87 HOH HOH . F 6 HOH A 130 830 88 HOH HOH . F 6 HOH A 131 831 103 HOH HOH . F 6 HOH A 132 832 132 HOH HOH . F 6 HOH A 133 833 220 HOH HOH . F 6 HOH A 134 834 67 HOH HOH . F 6 HOH A 135 835 156 HOH HOH . F 6 HOH A 136 836 36 HOH HOH . F 6 HOH A 137 837 20 HOH HOH . F 6 HOH A 138 838 27 HOH HOH . F 6 HOH A 139 839 81 HOH HOH . F 6 HOH A 140 840 144 HOH HOH . F 6 HOH A 141 841 60 HOH HOH . F 6 HOH A 142 842 195 HOH HOH . F 6 HOH A 143 843 162 HOH HOH . F 6 HOH A 144 844 24 HOH HOH . F 6 HOH A 145 845 115 HOH HOH . F 6 HOH A 146 846 82 HOH HOH . F 6 HOH A 147 847 188 HOH HOH . F 6 HOH A 148 848 107 HOH HOH . F 6 HOH A 149 849 157 HOH HOH . F 6 HOH A 150 850 197 HOH HOH . F 6 HOH A 151 851 48 HOH HOH . F 6 HOH A 152 852 105 HOH HOH . F 6 HOH A 153 853 16 HOH HOH . F 6 HOH A 154 854 2 HOH HOH . F 6 HOH A 155 855 47 HOH HOH . F 6 HOH A 156 856 104 HOH HOH . F 6 HOH A 157 857 212 HOH HOH . F 6 HOH A 158 858 218 HOH HOH . F 6 HOH A 159 859 191 HOH HOH . F 6 HOH A 160 860 125 HOH HOH . F 6 HOH A 161 861 91 HOH HOH . F 6 HOH A 162 862 73 HOH HOH . F 6 HOH A 163 863 93 HOH HOH . F 6 HOH A 164 864 182 HOH HOH . F 6 HOH A 165 865 84 HOH HOH . F 6 HOH A 166 866 151 HOH HOH . F 6 HOH A 167 867 206 HOH HOH . F 6 HOH A 168 868 192 HOH HOH . F 6 HOH A 169 869 194 HOH HOH . F 6 HOH A 170 870 62 HOH HOH . F 6 HOH A 171 871 184 HOH HOH . F 6 HOH A 172 872 77 HOH HOH . F 6 HOH A 173 873 18 HOH HOH . F 6 HOH A 174 874 232 HOH HOH . F 6 HOH A 175 875 190 HOH HOH . F 6 HOH A 176 876 78 HOH HOH . F 6 HOH A 177 877 13 HOH HOH . F 6 HOH A 178 878 178 HOH HOH . F 6 HOH A 179 879 207 HOH HOH . F 6 HOH A 180 880 80 HOH HOH . F 6 HOH A 181 881 138 HOH HOH . F 6 HOH A 182 882 113 HOH HOH . F 6 HOH A 183 883 161 HOH HOH . F 6 HOH A 184 884 108 HOH HOH . F 6 HOH A 185 885 110 HOH HOH . F 6 HOH A 186 886 168 HOH HOH . F 6 HOH A 187 887 193 HOH HOH . F 6 HOH A 188 888 135 HOH HOH . F 6 HOH A 189 889 118 HOH HOH . F 6 HOH A 190 890 201 HOH HOH . F 6 HOH A 191 891 112 HOH HOH . F 6 HOH A 192 892 209 HOH HOH . F 6 HOH A 193 893 171 HOH HOH . F 6 HOH A 194 894 136 HOH HOH . F 6 HOH A 195 895 183 HOH HOH . F 6 HOH A 196 896 66 HOH HOH . F 6 HOH A 197 897 236 HOH HOH . F 6 HOH A 198 898 199 HOH HOH . F 6 HOH A 199 899 239 HOH HOH . F 6 HOH A 200 900 238 HOH HOH . F 6 HOH A 201 901 159 HOH HOH . F 6 HOH A 202 902 133 HOH HOH . F 6 HOH A 203 903 169 HOH HOH . F 6 HOH A 204 904 219 HOH HOH . F 6 HOH A 205 905 240 HOH HOH . F 6 HOH A 206 906 228 HOH HOH . F 6 HOH A 207 907 127 HOH HOH . F 6 HOH A 208 908 154 HOH HOH . F 6 HOH A 209 909 117 HOH HOH . F 6 HOH A 210 910 142 HOH HOH . F 6 HOH A 211 911 200 HOH HOH . F 6 HOH A 212 912 187 HOH HOH . F 6 HOH A 213 913 202 HOH HOH . F 6 HOH A 214 914 139 HOH HOH . F 6 HOH A 215 915 189 HOH HOH . F 6 HOH A 216 916 165 HOH HOH . F 6 HOH A 217 917 208 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . D 4 30.969 31.233 -1.711 1 50.97 ? OH2 1PE 603 A 1 HETATM 2 C C12 1PE . . . D 4 29.715 31.11 -2.373 1 52.27 ? C12 1PE 603 A 1 HETATM 3 C C22 1PE . . . D 4 29.137 29.72 -2.264 1 50.17 ? C22 1PE 603 A 1 HETATM 4 O OH3 1PE . . . D 4 29.884 28.798 -3.064 1 45.28 ? OH3 1PE 603 A 1 HETATM 5 C C13 1PE . . . D 4 29.945 26.736 -4.305 1 44.18 ? C13 1PE 603 A 1 HETATM 6 C C23 1PE . . . D 4 29.155 27.611 -3.38 1 43.82 ? C23 1PE 603 A 1 HETATM 7 O OH4 1PE . . . D 4 31.144 26.288 -3.67 1 41.29 ? OH4 1PE 603 A 1 HETATM 8 C C14 1PE . . . D 4 33.073 24.851 -3.69 1 38.7 ? C14 1PE 603 A 1 HETATM 9 C C24 1PE . . . D 4 31.815 25.262 -4.389 1 42.11 ? C24 1PE 603 A 1 HETATM 10 O OH5 1PE . . . D 4 33.87 25.979 -3.368 1 36.18 ? OH5 1PE 603 A 1 HETATM 11 C C15 1PE . . . D 4 36.031 26.787 -2.7 1 40.95 ? C15 1PE 603 A 1 HETATM 12 C C25 1PE . . . D 4 35.12 25.606 -2.801 1 40.58 ? C25 1PE 603 A 1 HETATM 13 O OH6 1PE . . . D 4 35.568 27.7 -1.712 1 42.33 ? OH6 1PE 603 A 1 HETATM 14 C C16 1PE . . . D 4 36.108 29.825 -0.715 1 42.88 ? C16 1PE 603 A 1 HETATM 15 C C26 1PE . . . D 4 36.618 28.486 -1.165 1 42.63 ? C26 1PE 603 A 1 HETATM 16 O OH7 1PE . . . D 4 34.717 29.982 -0.939 1 44.89 ? OH7 1PE 603 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #