data_8DL4
#
_model_server_result.job_id            hSjEaBi7mQygCE92WvVHkw 
_model_server_result.datetime_utc      '2024-10-16 10:37:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dl4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":604}' 
#
_entry.id    8DL4 
#
_exptl.entry_id    8DL4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.3 
_cell.angle_gamma         90 
_cell.entry_id            8DL4 
_cell.length_a            76.392 
_cell.length_b            64.379 
_cell.length_c            81.003 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DL4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 470 A CYS 470 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N2 SKX . A SKX 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                BGC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     beta-D-glucose;D-glucose;glucose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C3 BGC sing 107 n n 
C2 C1 BGC sing 108 n n 
C2 O2 BGC sing 109 n n 
C2 H2 BGC sing 110 n n 
C3 C4 BGC sing 111 n n 
C3 O3 BGC sing 112 n n 
C3 H3 BGC sing 113 n n 
C4 C5 BGC sing 114 n n 
C4 O4 BGC sing 115 n n 
C4 H4 BGC sing 116 n n 
C5 C6 BGC sing 117 n n 
C5 O5 BGC sing 118 n n 
C5 H5 BGC sing 119 n n 
C6 O6 BGC sing 120 n n 
C6 H61 BGC sing 121 n n 
C6 H62 BGC sing 122 n n 
C1 O1 BGC sing 123 n n 
C1 O5 BGC sing 124 n n 
C1 H1 BGC sing 125 n n 
O1 HO1 BGC sing 126 n n 
O2 HO2 BGC sing 127 n n 
O3 HO3 BGC sing 128 n n 
O4 HO4 BGC sing 129 n n 
O6 HO6 BGC sing 130 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
BGC DGlcpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
BGC b-D-glucopyranose 'COMMON NAME' GMML 1 
BGC b-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
BGC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8DL4 
_atom_sites.fract_transf_matrix[1][1]    0.01309 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00191 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015533 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012476 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 601 HEM HEM . 
C 3 SKX A 1 602 701 SKX 511 . 
D 4 1PE A 1 603 702 1PE 1PE . 
E 5 BGC A 1 604 703 BGC GLC . 
F 6 HOH A 1 701 94 HOH HOH . 
F 6 HOH A 2 702 226 HOH HOH . 
F 6 HOH A 3 703 119 HOH HOH . 
F 6 HOH A 4 704 179 HOH HOH . 
F 6 HOH A 5 705 229 HOH HOH . 
F 6 HOH A 6 706 234 HOH HOH . 
F 6 HOH A 7 707 237 HOH HOH . 
F 6 HOH A 8 708 43 HOH HOH . 
F 6 HOH A 9 709 79 HOH HOH . 
F 6 HOH A 10 710 205 HOH HOH . 
F 6 HOH A 11 711 22 HOH HOH . 
F 6 HOH A 12 712 211 HOH HOH . 
F 6 HOH A 13 713 39 HOH HOH . 
F 6 HOH A 14 714 12 HOH HOH . 
F 6 HOH A 15 715 100 HOH HOH . 
F 6 HOH A 16 716 124 HOH HOH . 
F 6 HOH A 17 717 11 HOH HOH . 
F 6 HOH A 18 718 5 HOH HOH . 
F 6 HOH A 19 719 9 HOH HOH . 
F 6 HOH A 20 720 233 HOH HOH . 
F 6 HOH A 21 721 140 HOH HOH . 
F 6 HOH A 22 722 126 HOH HOH . 
F 6 HOH A 23 723 56 HOH HOH . 
F 6 HOH A 24 724 83 HOH HOH . 
F 6 HOH A 25 725 32 HOH HOH . 
F 6 HOH A 26 726 116 HOH HOH . 
F 6 HOH A 27 727 54 HOH HOH . 
F 6 HOH A 28 728 166 HOH HOH . 
F 6 HOH A 29 729 180 HOH HOH . 
F 6 HOH A 30 730 153 HOH HOH . 
F 6 HOH A 31 731 59 HOH HOH . 
F 6 HOH A 32 732 57 HOH HOH . 
F 6 HOH A 33 733 4 HOH HOH . 
F 6 HOH A 34 734 44 HOH HOH . 
F 6 HOH A 35 735 129 HOH HOH . 
F 6 HOH A 36 736 70 HOH HOH . 
F 6 HOH A 37 737 55 HOH HOH . 
F 6 HOH A 38 738 109 HOH HOH . 
F 6 HOH A 39 739 33 HOH HOH . 
F 6 HOH A 40 740 51 HOH HOH . 
F 6 HOH A 41 741 49 HOH HOH . 
F 6 HOH A 42 742 65 HOH HOH . 
F 6 HOH A 43 743 61 HOH HOH . 
F 6 HOH A 44 744 167 HOH HOH . 
F 6 HOH A 45 745 14 HOH HOH . 
F 6 HOH A 46 746 101 HOH HOH . 
F 6 HOH A 47 747 148 HOH HOH . 
F 6 HOH A 48 748 146 HOH HOH . 
F 6 HOH A 49 749 1 HOH HOH . 
F 6 HOH A 50 750 121 HOH HOH . 
F 6 HOH A 51 751 7 HOH HOH . 
F 6 HOH A 52 752 41 HOH HOH . 
F 6 HOH A 53 753 90 HOH HOH . 
F 6 HOH A 54 754 64 HOH HOH . 
F 6 HOH A 55 755 221 HOH HOH . 
F 6 HOH A 56 756 158 HOH HOH . 
F 6 HOH A 57 757 46 HOH HOH . 
F 6 HOH A 58 758 6 HOH HOH . 
F 6 HOH A 59 759 30 HOH HOH . 
F 6 HOH A 60 760 186 HOH HOH . 
F 6 HOH A 61 761 3 HOH HOH . 
F 6 HOH A 62 762 149 HOH HOH . 
F 6 HOH A 63 763 72 HOH HOH . 
F 6 HOH A 64 764 155 HOH HOH . 
F 6 HOH A 65 765 69 HOH HOH . 
F 6 HOH A 66 766 217 HOH HOH . 
F 6 HOH A 67 767 106 HOH HOH . 
F 6 HOH A 68 768 85 HOH HOH . 
F 6 HOH A 69 769 89 HOH HOH . 
F 6 HOH A 70 770 53 HOH HOH . 
F 6 HOH A 71 771 58 HOH HOH . 
F 6 HOH A 72 772 97 HOH HOH . 
F 6 HOH A 73 773 223 HOH HOH . 
F 6 HOH A 74 774 130 HOH HOH . 
F 6 HOH A 75 775 215 HOH HOH . 
F 6 HOH A 76 776 123 HOH HOH . 
F 6 HOH A 77 777 174 HOH HOH . 
F 6 HOH A 78 778 35 HOH HOH . 
F 6 HOH A 79 779 50 HOH HOH . 
F 6 HOH A 80 780 8 HOH HOH . 
F 6 HOH A 81 781 203 HOH HOH . 
F 6 HOH A 82 782 92 HOH HOH . 
F 6 HOH A 83 783 210 HOH HOH . 
F 6 HOH A 84 784 214 HOH HOH . 
F 6 HOH A 85 785 21 HOH HOH . 
F 6 HOH A 86 786 68 HOH HOH . 
F 6 HOH A 87 787 213 HOH HOH . 
F 6 HOH A 88 788 86 HOH HOH . 
F 6 HOH A 89 789 29 HOH HOH . 
F 6 HOH A 90 790 98 HOH HOH . 
F 6 HOH A 91 791 34 HOH HOH . 
F 6 HOH A 92 792 17 HOH HOH . 
F 6 HOH A 93 793 42 HOH HOH . 
F 6 HOH A 94 794 231 HOH HOH . 
F 6 HOH A 95 795 76 HOH HOH . 
F 6 HOH A 96 796 63 HOH HOH . 
F 6 HOH A 97 797 45 HOH HOH . 
F 6 HOH A 98 798 75 HOH HOH . 
F 6 HOH A 99 799 131 HOH HOH . 
F 6 HOH A 100 800 230 HOH HOH . 
F 6 HOH A 101 801 28 HOH HOH . 
F 6 HOH A 102 802 122 HOH HOH . 
F 6 HOH A 103 803 95 HOH HOH . 
F 6 HOH A 104 804 52 HOH HOH . 
F 6 HOH A 105 805 15 HOH HOH . 
F 6 HOH A 106 806 114 HOH HOH . 
F 6 HOH A 107 807 37 HOH HOH . 
F 6 HOH A 108 808 25 HOH HOH . 
F 6 HOH A 109 809 120 HOH HOH . 
F 6 HOH A 110 810 111 HOH HOH . 
F 6 HOH A 111 811 141 HOH HOH . 
F 6 HOH A 112 812 99 HOH HOH . 
F 6 HOH A 113 813 26 HOH HOH . 
F 6 HOH A 114 814 23 HOH HOH . 
F 6 HOH A 115 815 128 HOH HOH . 
F 6 HOH A 116 816 71 HOH HOH . 
F 6 HOH A 117 817 143 HOH HOH . 
F 6 HOH A 118 818 134 HOH HOH . 
F 6 HOH A 119 819 38 HOH HOH . 
F 6 HOH A 120 820 31 HOH HOH . 
F 6 HOH A 121 821 152 HOH HOH . 
F 6 HOH A 122 822 40 HOH HOH . 
F 6 HOH A 123 823 19 HOH HOH . 
F 6 HOH A 124 824 102 HOH HOH . 
F 6 HOH A 125 825 74 HOH HOH . 
F 6 HOH A 126 826 10 HOH HOH . 
F 6 HOH A 127 827 198 HOH HOH . 
F 6 HOH A 128 828 222 HOH HOH . 
F 6 HOH A 129 829 87 HOH HOH . 
F 6 HOH A 130 830 88 HOH HOH . 
F 6 HOH A 131 831 103 HOH HOH . 
F 6 HOH A 132 832 132 HOH HOH . 
F 6 HOH A 133 833 220 HOH HOH . 
F 6 HOH A 134 834 67 HOH HOH . 
F 6 HOH A 135 835 156 HOH HOH . 
F 6 HOH A 136 836 36 HOH HOH . 
F 6 HOH A 137 837 20 HOH HOH . 
F 6 HOH A 138 838 27 HOH HOH . 
F 6 HOH A 139 839 81 HOH HOH . 
F 6 HOH A 140 840 144 HOH HOH . 
F 6 HOH A 141 841 60 HOH HOH . 
F 6 HOH A 142 842 195 HOH HOH . 
F 6 HOH A 143 843 162 HOH HOH . 
F 6 HOH A 144 844 24 HOH HOH . 
F 6 HOH A 145 845 115 HOH HOH . 
F 6 HOH A 146 846 82 HOH HOH . 
F 6 HOH A 147 847 188 HOH HOH . 
F 6 HOH A 148 848 107 HOH HOH . 
F 6 HOH A 149 849 157 HOH HOH . 
F 6 HOH A 150 850 197 HOH HOH . 
F 6 HOH A 151 851 48 HOH HOH . 
F 6 HOH A 152 852 105 HOH HOH . 
F 6 HOH A 153 853 16 HOH HOH . 
F 6 HOH A 154 854 2 HOH HOH . 
F 6 HOH A 155 855 47 HOH HOH . 
F 6 HOH A 156 856 104 HOH HOH . 
F 6 HOH A 157 857 212 HOH HOH . 
F 6 HOH A 158 858 218 HOH HOH . 
F 6 HOH A 159 859 191 HOH HOH . 
F 6 HOH A 160 860 125 HOH HOH . 
F 6 HOH A 161 861 91 HOH HOH . 
F 6 HOH A 162 862 73 HOH HOH . 
F 6 HOH A 163 863 93 HOH HOH . 
F 6 HOH A 164 864 182 HOH HOH . 
F 6 HOH A 165 865 84 HOH HOH . 
F 6 HOH A 166 866 151 HOH HOH . 
F 6 HOH A 167 867 206 HOH HOH . 
F 6 HOH A 168 868 192 HOH HOH . 
F 6 HOH A 169 869 194 HOH HOH . 
F 6 HOH A 170 870 62 HOH HOH . 
F 6 HOH A 171 871 184 HOH HOH . 
F 6 HOH A 172 872 77 HOH HOH . 
F 6 HOH A 173 873 18 HOH HOH . 
F 6 HOH A 174 874 232 HOH HOH . 
F 6 HOH A 175 875 190 HOH HOH . 
F 6 HOH A 176 876 78 HOH HOH . 
F 6 HOH A 177 877 13 HOH HOH . 
F 6 HOH A 178 878 178 HOH HOH . 
F 6 HOH A 179 879 207 HOH HOH . 
F 6 HOH A 180 880 80 HOH HOH . 
F 6 HOH A 181 881 138 HOH HOH . 
F 6 HOH A 182 882 113 HOH HOH . 
F 6 HOH A 183 883 161 HOH HOH . 
F 6 HOH A 184 884 108 HOH HOH . 
F 6 HOH A 185 885 110 HOH HOH . 
F 6 HOH A 186 886 168 HOH HOH . 
F 6 HOH A 187 887 193 HOH HOH . 
F 6 HOH A 188 888 135 HOH HOH . 
F 6 HOH A 189 889 118 HOH HOH . 
F 6 HOH A 190 890 201 HOH HOH . 
F 6 HOH A 191 891 112 HOH HOH . 
F 6 HOH A 192 892 209 HOH HOH . 
F 6 HOH A 193 893 171 HOH HOH . 
F 6 HOH A 194 894 136 HOH HOH . 
F 6 HOH A 195 895 183 HOH HOH . 
F 6 HOH A 196 896 66 HOH HOH . 
F 6 HOH A 197 897 236 HOH HOH . 
F 6 HOH A 198 898 199 HOH HOH . 
F 6 HOH A 199 899 239 HOH HOH . 
F 6 HOH A 200 900 238 HOH HOH . 
F 6 HOH A 201 901 159 HOH HOH . 
F 6 HOH A 202 902 133 HOH HOH . 
F 6 HOH A 203 903 169 HOH HOH . 
F 6 HOH A 204 904 219 HOH HOH . 
F 6 HOH A 205 905 240 HOH HOH . 
F 6 HOH A 206 906 228 HOH HOH . 
F 6 HOH A 207 907 127 HOH HOH . 
F 6 HOH A 208 908 154 HOH HOH . 
F 6 HOH A 209 909 117 HOH HOH . 
F 6 HOH A 210 910 142 HOH HOH . 
F 6 HOH A 211 911 200 HOH HOH . 
F 6 HOH A 212 912 187 HOH HOH . 
F 6 HOH A 213 913 202 HOH HOH . 
F 6 HOH A 214 914 139 HOH HOH . 
F 6 HOH A 215 915 189 HOH HOH . 
F 6 HOH A 216 916 165 HOH HOH . 
F 6 HOH A 217 917 208 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 BGC . . . E 5 44.241 12.938 10.03 1 53.48 ? C2 BGC 604 A 1 
HETATM 2 C C3 BGC . . . E 5 43.783 13.532 8.703 1 50.67 ? C3 BGC 604 A 1 
HETATM 3 C C4 BGC . . . E 5 42.744 14.64 8.923 1 47.63 ? C4 BGC 604 A 1 
HETATM 4 C C5 BGC . . . E 5 43.217 15.615 10.016 1 51.77 ? C5 BGC 604 A 1 
HETATM 5 C C6 BGC . . . E 5 42.216 16.719 10.377 1 46.04 ? C6 BGC 604 A 1 
HETATM 6 C C1 BGC . . . E 5 44.748 14.09 10.887 1 53.43 ? C1 BGC 604 A 1 
HETATM 7 O O1 BGC . . . E 5 45.395 13.604 12.044 1 58.65 ? O1 BGC 604 A 1 
HETATM 8 O O2 BGC . . . E 5 45.23 11.947 9.84 1 56.91 ? O2 BGC 604 A 1 
HETATM 9 O O3 BGC . . . E 5 43.277 12.488 7.905 1 55.01 ? O3 BGC 604 A 1 
HETATM 10 O O4 BGC . . . E 5 42.515 15.335 7.715 1 41.31 ? O4 BGC 604 A 1 
HETATM 11 O O5 BGC . . . E 5 43.614 14.895 11.173 1 50.67 ? O5 BGC 604 A 1 
HETATM 12 O O6 BGC . . . E 5 40.938 16.182 10.633 1 49.67 ? O6 BGC 604 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#