data_8DL7
#
_model_server_result.job_id            xfYSAjJFbEexL4iQtmggXQ 
_model_server_result.datetime_utc      '2024-12-26 16:48:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dl7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":602}' 
#
_entry.id    8DL7 
#
_exptl.entry_id    8DL7 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DL7 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DL7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 326 A CYS 326 1_555 D SG CYS 7 F CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf2 A SG CYS 367 A CYS 367 1_555 A SG CYS 553 A CYS 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 B SG CYS 23 C CYS 43 1_555 B SG CYS 88 C CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 C SG CYS 41 D CYS 41 1_555 C SG CYS 115 D CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 D C SQ6 1 F SQ6 1 1_555 D N THR 2 F THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 D C HIS 3 F HIS 3 1_555 D N 2GX 4 F 2GX 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 D C 2GX 4 F 2GX 4 1_555 D N EOE 5 F EOE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 D C EOE 5 F EOE 5 1_555 D N ARG 6 F ARG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 D C ARG 8 F ARG 8 1_555 D N 3FB 9 F 3FB 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale6 D C 3FB 9 F 3FB 9 1_555 D N ACA 10 F ACA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 D C ACA 10 F ACA 10 1_555 D N SOW 11 F SOW 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 D C SOW 11 F SOW 11 1_555 D N SQI 12 F SQI 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 POV sing 361 n n 
N C13 POV sing 362 n n 
N C14 POV sing 363 n n 
N C15 POV sing 364 n n 
P O11 POV sing 365 n n 
P O12 POV sing 366 n n 
P O13 POV sing 367 n n 
P O14 POV doub 368 n n 
C1 C2 POV sing 369 n n 
C1 O11 POV sing 370 n n 
C1 H1 POV sing 371 n n 
C1 H1A POV sing 372 n n 
C2 C3 POV sing 373 n n 
C2 O21 POV sing 374 n n 
C2 H2 POV sing 375 n n 
C3 O31 POV sing 376 n n 
C3 H3 POV sing 377 n n 
C3 H3A POV sing 378 n n 
C210 C211 POV sing 379 n n 
C210 C29 POV doub 380 z n 
C210 H210 POV sing 381 n n 
C310 C311 POV sing 382 n n 
C310 C39 POV sing 383 n n 
C310 H310 POV sing 384 n n 
C310 H31A POV sing 385 n n 
C11 C12 POV sing 386 n n 
C11 O12 POV sing 387 n n 
C11 H11 POV sing 388 n n 
C11 H11A POV sing 389 n n 
C211 C212 POV sing 390 n n 
C211 H211 POV sing 391 n n 
C211 H21A POV sing 392 n n 
C311 C312 POV sing 393 n n 
C311 H311 POV sing 394 n n 
C311 H31B POV sing 395 n n 
C12 H12 POV sing 396 n n 
C12 H12A POV sing 397 n n 
C212 C213 POV sing 398 n n 
C212 H212 POV sing 399 n n 
C212 H21B POV sing 400 n n 
C312 C313 POV sing 401 n n 
C312 H312 POV sing 402 n n 
C312 H31C POV sing 403 n n 
C13 H13 POV sing 404 n n 
C13 H13A POV sing 405 n n 
C13 H13B POV sing 406 n n 
C213 C214 POV sing 407 n n 
C213 H213 POV sing 408 n n 
C213 H21C POV sing 409 n n 
C313 C314 POV sing 410 n n 
C313 H313 POV sing 411 n n 
C313 H31D POV sing 412 n n 
C14 H14 POV sing 413 n n 
C14 H14A POV sing 414 n n 
C14 H14B POV sing 415 n n 
C214 C215 POV sing 416 n n 
C214 H214 POV sing 417 n n 
C214 H21D POV sing 418 n n 
C314 C315 POV sing 419 n n 
C314 H314 POV sing 420 n n 
C314 H31E POV sing 421 n n 
C15 H15 POV sing 422 n n 
C15 H15A POV sing 423 n n 
C15 H15B POV sing 424 n n 
C215 C216 POV sing 425 n n 
C215 H215 POV sing 426 n n 
C215 H21E POV sing 427 n n 
C315 C316 POV sing 428 n n 
C315 H315 POV sing 429 n n 
C315 H31F POV sing 430 n n 
C216 C217 POV sing 431 n n 
C216 H216 POV sing 432 n n 
C216 H21F POV sing 433 n n 
C316 H316 POV sing 434 n n 
C316 H31G POV sing 435 n n 
C316 H31H POV sing 436 n n 
C217 C218 POV sing 437 n n 
C217 H217 POV sing 438 n n 
C217 H21G POV sing 439 n n 
C218 H218 POV sing 440 n n 
C218 H21H POV sing 441 n n 
C218 H21J POV sing 442 n n 
C21 O21 POV sing 443 n n 
C21 C22 POV sing 444 n n 
C21 O22 POV doub 445 n n 
C22 C23 POV sing 446 n n 
C22 H22 POV sing 447 n n 
C22 H22A POV sing 448 n n 
C23 C24 POV sing 449 n n 
C23 H23 POV sing 450 n n 
C23 H23A POV sing 451 n n 
C24 C25 POV sing 452 n n 
C24 H24 POV sing 453 n n 
C24 H24A POV sing 454 n n 
C25 C26 POV sing 455 n n 
C25 H25 POV sing 456 n n 
C25 H25A POV sing 457 n n 
C26 C27 POV sing 458 n n 
C26 H26 POV sing 459 n n 
C26 H26A POV sing 460 n n 
C27 C28 POV sing 461 n n 
C27 H27 POV sing 462 n n 
C27 H27A POV sing 463 n n 
C28 C29 POV sing 464 n n 
C28 H28 POV sing 465 n n 
C28 H28A POV sing 466 n n 
C29 H29 POV sing 467 n n 
C31 O31 POV sing 468 n n 
C31 C32 POV sing 469 n n 
C31 O32 POV doub 470 n n 
C32 C33 POV sing 471 n n 
C32 H32 POV sing 472 n n 
C32 H32A POV sing 473 n n 
C33 C34 POV sing 474 n n 
C33 H33 POV sing 475 n n 
C33 H33A POV sing 476 n n 
C34 C35 POV sing 477 n n 
C34 H34 POV sing 478 n n 
C34 H34A POV sing 479 n n 
C35 C36 POV sing 480 n n 
C35 H35 POV sing 481 n n 
C35 H35A POV sing 482 n n 
C36 C37 POV sing 483 n n 
C36 H36 POV sing 484 n n 
C36 H36A POV sing 485 n n 
C37 C38 POV sing 486 n n 
C37 H37 POV sing 487 n n 
C37 H37A POV sing 488 n n 
C38 C39 POV sing 489 n n 
C38 H38 POV sing 490 n n 
C38 H38A POV sing 491 n n 
C39 H39 POV sing 492 n n 
C39 H39A POV sing 493 n n 
#
_atom_sites.entry_id                     8DL7 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 POV A 1 601 601 POV POV . 
F 5 POV A 1 602 602 POV POV . 
G 6 HOH D 1 301 301 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N POV . . . F 5 126.916 85.284 108.488 1 194.63 ? N POV 602 A 1 
HETATM 2 P P POV . . . F 5 126.026 88.241 105.697 1 200.71 ? P POV 602 A 1 
HETATM 3 C C1 POV . . . F 5 124.668 89.966 104.221 1 193.4 ? C1 POV 602 A 1 
HETATM 4 C C2 POV . . . F 5 124.43 91.474 104.078 1 193.43 ? C2 POV 602 A 1 
HETATM 5 C C3 POV . . . F 5 125.042 92.081 102.837 1 193.83 ? C3 POV 602 A 1 
HETATM 6 C C210 POV . . . F 5 123.196 97.518 114.323 1 191.9 ? C210 POV 602 A 1 
HETATM 7 C C310 POV . . . F 5 123.406 101.009 109.784 1 191.81 ? C310 POV 602 A 1 
HETATM 8 C C11 POV . . . F 5 125.076 86.981 107.805 1 193.45 ? C11 POV 602 A 1 
HETATM 9 O O11 POV . . . F 5 125.619 89.748 105.24 1 196.37 ? O11 POV 602 A 1 
HETATM 10 C C211 POV . . . F 5 124.23 97.09 115.315 1 193.57 ? C211 POV 602 A 1 
HETATM 11 C C311 POV . . . F 5 124.306 102.207 110.051 1 192.01 ? C311 POV 602 A 1 
HETATM 12 C C12 POV . . . F 5 126.323 86.666 108.602 1 194.22 ? C12 POV 602 A 1 
HETATM 13 O O12 POV . . . F 5 125.152 88.2 107.104 1 194.83 ? O12 POV 602 A 1 
HETATM 14 C C212 POV . . . F 5 125.229 98.211 115.602 1 193.24 ? C212 POV 602 A 1 
HETATM 15 C C312 POV . . . F 5 124.731 102.31 111.511 1 192.37 ? C312 POV 602 A 1 
HETATM 16 C C13 POV . . . F 5 126.003 84.254 109.056 1 192.81 ? C13 POV 602 A 1 
HETATM 17 O O13 POV . . . F 5 127.484 88.272 106.042 1 194.23 -1 O13 POV 602 A 1 
HETATM 18 C C213 POV . . . F 5 126.58 97.698 116.082 1 193.5 ? C213 POV 602 A 1 
HETATM 19 C C313 POV . . . F 5 125.572 103.541 111.824 1 192.03 ? C313 POV 602 A 1 
HETATM 20 C C14 POV . . . F 5 127.113 85.003 107.038 1 193.48 ? C14 POV 602 A 1 
HETATM 21 O O14 POV . . . F 5 125.477 87.217 104.755 1 194.67 ? O14 POV 602 A 1 
HETATM 22 C C214 POV . . . F 5 126.513 97.029 117.448 1 192.86 ? C214 POV 602 A 1 
HETATM 23 C C314 POV . . . F 5 125.997 103.624 113.286 1 191.67 ? C314 POV 602 A 1 
HETATM 24 C C15 POV . . . F 5 128.243 85.188 109.161 1 192.17 ? C15 POV 602 A 1 
HETATM 25 C C215 POV . . . F 5 126.385 98.018 118.599 1 192.88 ? C215 POV 602 A 1 
HETATM 26 C C315 POV . . . F 5 126.853 104.844 113.601 1 191.21 ? C315 POV 602 A 1 
HETATM 27 C C216 POV . . . F 5 126.5 97.363 119.968 1 192.93 ? C216 POV 602 A 1 
HETATM 28 C C316 POV . . . F 5 127.299 104.9 115.055 1 190.58 ? C316 POV 602 A 1 
HETATM 29 C C217 POV . . . F 5 126.5 98.365 121.115 1 193.25 ? C217 POV 602 A 1 
HETATM 30 C C218 POV . . . F 5 126.641 97.704 122.477 1 192.67 ? C218 POV 602 A 1 
HETATM 31 C C21 POV . . . F 5 124.146 92.673 106.104 1 192.93 ? C21 POV 602 A 1 
HETATM 32 O O21 POV . . . F 5 124.974 92.192 105.184 1 194.27 ? O21 POV 602 A 1 
HETATM 33 C C22 POV . . . F 5 124.898 93.357 107.21 1 192.52 ? C22 POV 602 A 1 
HETATM 34 O O22 POV . . . F 5 122.95 92.562 106.036 1 193.33 ? O22 POV 602 A 1 
HETATM 35 C C23 POV . . . F 5 124.048 94.305 108.038 1 192.47 ? C23 POV 602 A 1 
HETATM 36 C C24 POV . . . F 5 123.203 93.56 109.059 1 191.76 ? C24 POV 602 A 1 
HETATM 37 C C25 POV . . . F 5 122.146 94.445 109.702 1 190.73 ? C25 POV 602 A 1 
HETATM 38 C C26 POV . . . F 5 122.735 95.673 110.379 1 190.29 ? C26 POV 602 A 1 
HETATM 39 C C27 POV . . . F 5 123.671 95.326 111.527 1 191.2 ? C27 POV 602 A 1 
HETATM 40 C C28 POV . . . F 5 124.238 96.563 112.221 1 191.95 ? C28 POV 602 A 1 
HETATM 41 C C29 POV . . . F 5 123.199 97.292 113.011 1 191.2 ? C29 POV 602 A 1 
HETATM 42 C C31 POV . . . F 5 124.865 94.172 101.741 1 193.22 ? C31 POV 602 A 1 
HETATM 43 O O31 POV . . . F 5 124.827 93.487 102.877 1 194.56 ? O31 POV 602 A 1 
HETATM 44 C C32 POV . . . F 5 124.588 95.63 101.982 1 192.83 ? C32 POV 602 A 1 
HETATM 45 O O32 POV . . . F 5 125.091 93.67 100.669 1 191.47 ? O32 POV 602 A 1 
HETATM 46 C C33 POV . . . F 5 125.711 96.4 102.652 1 191.96 ? C33 POV 602 A 1 
HETATM 47 C C34 POV . . . F 5 125.465 96.543 104.149 1 192.45 ? C34 POV 602 A 1 
HETATM 48 C C35 POV . . . F 5 124.428 97.593 104.521 1 191.92 ? C35 POV 602 A 1 
HETATM 49 C C36 POV . . . F 5 124.305 97.771 106.029 1 191.29 ? C36 POV 602 A 1 
HETATM 50 C C37 POV . . . F 5 123.5 98.993 106.443 1 190.23 ? C37 POV 602 A 1 
HETATM 51 C C38 POV . . . F 5 123.594 99.287 107.934 1 190.82 ? C38 POV 602 A 1 
HETATM 52 C C39 POV . . . F 5 123.191 100.708 108.307 1 191.07 ? C39 POV 602 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           52 
#