data_8DLB # _model_server_result.job_id V7HzgeJ_GK4uDyEmMAvQxA _model_server_result.datetime_utc '2025-07-09 22:45:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dlb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8DLB # _exptl.entry_id 8DLB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 324.374 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(5S)-5-(3,4-dimethoxyphenyl)-3-phenyl-4,5-dihydro-1H-pyrazol-1-yl]ethan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.17 _cell.angle_gamma 90 _cell.entry_id 8DLB _cell.length_a 45.012 _cell.length_b 54.909 _cell.length_c 115.856 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DLB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C3 _struct_conn.ptnr2_label_comp_id SRU _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SRU _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.84 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H20 N2 O3' _chem_comp.formula_weight 324.374 _chem_comp.id SRU _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(5S)-5-(3,4-dimethoxyphenyl)-3-phenyl-4,5-dihydro-1H-pyrazol-1-yl]ethan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 O23 SRU sing 290 n n O23 C13 SRU sing 291 n n C13 C12 SRU doub 292 n y C13 C14 SRU sing 293 n y C12 C11 SRU sing 294 n y O21 C14 SRU sing 295 n n O21 C22 SRU sing 296 n n C14 C15 SRU doub 297 n y C11 C10 SRU doub 298 n y O4 C2 SRU doub 299 n n C15 C10 SRU sing 300 n y C10 C8 SRU sing 301 n n C2 C3 SRU sing 302 n n C2 N1 SRU sing 303 n n N1 C8 SRU sing 304 n n N1 N5 SRU sing 305 n n C8 C7 SRU sing 306 n n N5 C6 SRU doub 307 n n C7 C6 SRU sing 308 n n C6 C9 SRU sing 309 n n C9 C20 SRU doub 310 n y C9 C16 SRU sing 311 n y C20 C19 SRU sing 312 n y C16 C17 SRU doub 313 n y C19 C18 SRU doub 314 n y C17 C18 SRU sing 315 n y C11 H1 SRU sing 316 n n C12 H2 SRU sing 317 n n C15 H3 SRU sing 318 n n C16 H4 SRU sing 319 n n C17 H5 SRU sing 320 n n C18 H6 SRU sing 321 n n C19 H7 SRU sing 322 n n C20 H8 SRU sing 323 n n C22 H9 SRU sing 324 n n C22 H10 SRU sing 325 n n C22 H11 SRU sing 326 n n C24 H12 SRU sing 327 n n C24 H13 SRU sing 328 n n C24 H14 SRU sing 329 n n C3 H15 SRU sing 330 n n C3 H16 SRU sing 331 n n C3 H17 SRU sing 332 n n C7 H18 SRU sing 333 n n C7 H19 SRU sing 334 n n C8 H20 SRU sing 335 n n # _atom_sites.entry_id 8DLB _atom_sites.fract_transf_matrix[1][1] 0.022216 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004389 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018212 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008798 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SRU A 1 401 401 SRU Z83 . C 3 HOH A 1 501 13 HOH HOH . C 3 HOH A 2 502 10 HOH HOH . C 3 HOH A 3 503 36 HOH HOH . C 3 HOH A 4 504 37 HOH HOH . C 3 HOH A 5 505 63 HOH HOH . C 3 HOH A 6 506 42 HOH HOH . C 3 HOH A 7 507 71 HOH HOH . C 3 HOH A 8 508 18 HOH HOH . C 3 HOH A 9 509 58 HOH HOH . C 3 HOH A 10 510 3 HOH HOH . C 3 HOH A 11 511 46 HOH HOH . C 3 HOH A 12 512 15 HOH HOH . C 3 HOH A 13 513 57 HOH HOH . C 3 HOH A 14 514 34 HOH HOH . C 3 HOH A 15 515 53 HOH HOH . C 3 HOH A 16 516 30 HOH HOH . C 3 HOH A 17 517 48 HOH HOH . C 3 HOH A 18 518 62 HOH HOH . C 3 HOH A 19 519 9 HOH HOH . C 3 HOH A 20 520 19 HOH HOH . C 3 HOH A 21 521 24 HOH HOH . C 3 HOH A 22 522 51 HOH HOH . C 3 HOH A 23 523 40 HOH HOH . C 3 HOH A 24 524 27 HOH HOH . C 3 HOH A 25 525 29 HOH HOH . C 3 HOH A 26 526 12 HOH HOH . C 3 HOH A 27 527 4 HOH HOH . C 3 HOH A 28 528 16 HOH HOH . C 3 HOH A 29 529 2 HOH HOH . C 3 HOH A 30 530 43 HOH HOH . C 3 HOH A 31 531 50 HOH HOH . C 3 HOH A 32 532 47 HOH HOH . C 3 HOH A 33 533 33 HOH HOH . C 3 HOH A 34 534 85 HOH HOH . C 3 HOH A 35 535 23 HOH HOH . C 3 HOH A 36 536 64 HOH HOH . C 3 HOH A 37 537 60 HOH HOH . C 3 HOH A 38 538 87 HOH HOH . C 3 HOH A 39 539 25 HOH HOH . C 3 HOH A 40 540 17 HOH HOH . C 3 HOH A 41 541 86 HOH HOH . C 3 HOH A 42 542 11 HOH HOH . C 3 HOH A 43 543 1 HOH HOH . C 3 HOH A 44 544 81 HOH HOH . C 3 HOH A 45 545 59 HOH HOH . C 3 HOH A 46 546 14 HOH HOH . C 3 HOH A 47 547 68 HOH HOH . C 3 HOH A 48 548 6 HOH HOH . C 3 HOH A 49 549 56 HOH HOH . C 3 HOH A 50 550 38 HOH HOH . C 3 HOH A 51 551 31 HOH HOH . C 3 HOH A 52 552 77 HOH HOH . C 3 HOH A 53 553 74 HOH HOH . C 3 HOH A 54 554 32 HOH HOH . C 3 HOH A 55 555 83 HOH HOH . C 3 HOH A 56 556 8 HOH HOH . C 3 HOH A 57 557 35 HOH HOH . C 3 HOH A 58 558 44 HOH HOH . C 3 HOH A 59 559 20 HOH HOH . C 3 HOH A 60 560 26 HOH HOH . C 3 HOH A 61 561 49 HOH HOH . C 3 HOH A 62 562 45 HOH HOH . C 3 HOH A 63 563 5 HOH HOH . C 3 HOH A 64 564 76 HOH HOH . C 3 HOH A 65 565 61 HOH HOH . C 3 HOH A 66 566 54 HOH HOH . C 3 HOH A 67 567 39 HOH HOH . C 3 HOH A 68 568 41 HOH HOH . C 3 HOH A 69 569 22 HOH HOH . C 3 HOH A 70 570 69 HOH HOH . C 3 HOH A 71 571 80 HOH HOH . C 3 HOH A 72 572 52 HOH HOH . C 3 HOH A 73 573 28 HOH HOH . C 3 HOH A 74 574 21 HOH HOH . C 3 HOH A 75 575 55 HOH HOH . C 3 HOH A 76 576 78 HOH HOH . C 3 HOH A 77 577 79 HOH HOH . C 3 HOH A 78 578 7 HOH HOH . C 3 HOH A 79 579 67 HOH HOH . C 3 HOH A 80 580 66 HOH HOH . C 3 HOH A 81 581 75 HOH HOH . C 3 HOH A 82 582 72 HOH HOH . C 3 HOH A 83 583 70 HOH HOH . C 3 HOH A 84 584 88 HOH HOH . C 3 HOH A 85 585 82 HOH HOH . C 3 HOH A 86 586 65 HOH HOH . C 3 HOH A 87 587 84 HOH HOH . C 3 HOH A 88 588 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 SRU . . . B 2 -21.329 -3.952 11.446 1 47.98 ? C10 SRU 401 A 1 HETATM 2 C C11 SRU . . . B 2 -21.31 -5.015 10.541 1 50.85 ? C11 SRU 401 A 1 HETATM 3 C C12 SRU . . . B 2 -22.094 -4.961 9.389 1 58.08 ? C12 SRU 401 A 1 HETATM 4 C C13 SRU . . . B 2 -22.905 -3.858 9.138 1 56.33 ? C13 SRU 401 A 1 HETATM 5 C C14 SRU . . . B 2 -22.935 -2.781 10.05 1 57.45 ? C14 SRU 401 A 1 HETATM 6 C C15 SRU . . . B 2 -22.144 -2.839 11.204 1 54.44 ? C15 SRU 401 A 1 HETATM 7 C C16 SRU . . . B 2 -19.134 -1.415 16.514 1 40.15 ? C16 SRU 401 A 1 HETATM 8 C C17 SRU . . . B 2 -19.204 -0.53 17.583 1 48.13 ? C17 SRU 401 A 1 HETATM 9 C C18 SRU . . . B 2 -20.258 0.391 17.662 1 60.76 ? C18 SRU 401 A 1 HETATM 10 C C19 SRU . . . B 2 -21.238 0.419 16.667 1 59.43 ? C19 SRU 401 A 1 HETATM 11 C C2 SRU . . . B 2 -18.177 -3.553 11.714 1 34.21 ? C2 SRU 401 A 1 HETATM 12 C C20 SRU . . . B 2 -21.169 -0.468 15.591 1 63.58 ? C20 SRU 401 A 1 HETATM 13 C C22 SRU . . . B 2 -23.671 -0.541 10.51 1 65.16 ? C22 SRU 401 A 1 HETATM 14 C C24 SRU . . . B 2 -23.701 -5.044 7.23 1 60.99 ? C24 SRU 401 A 1 HETATM 15 C C3 SRU . . . B 2 -16.905 -2.746 11.876 1 29.03 ? C3 SRU 401 A 1 HETATM 16 C C6 SRU . . . B 2 -20.04 -2.324 14.368 1 43.31 ? C6 SRU 401 A 1 HETATM 17 C C7 SRU . . . B 2 -21.122 -3.285 13.933 1 53.61 ? C7 SRU 401 A 1 HETATM 18 C C8 SRU . . . B 2 -20.487 -3.991 12.708 1 43.29 ? C8 SRU 401 A 1 HETATM 19 C C9 SRU . . . B 2 -20.118 -1.398 15.503 1 53.09 ? C9 SRU 401 A 1 HETATM 20 N N1 SRU . . . B 2 -19.158 -3.309 12.63 1 44.43 ? N1 SRU 401 A 1 HETATM 21 N N5 SRU . . . B 2 -18.982 -2.368 13.63 1 41.41 ? N5 SRU 401 A 1 HETATM 22 O O21 SRU . . . B 2 -23.758 -1.738 9.725 1 60.25 ? O21 SRU 401 A 1 HETATM 23 O O23 SRU . . . B 2 -23.68 -3.818 7.988 1 67.51 ? O23 SRU 401 A 1 HETATM 24 O O4 SRU . . . B 2 -18.303 -4.396 10.824 1 42.33 ? O4 SRU 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 24 #