data_8DLE # _model_server_result.job_id wsVpA7dfUQke7CRA5QyDYA _model_server_result.datetime_utc '2025-03-06 00:47:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dle # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":101}' # _entry.id 8DLE # _exptl.entry_id 8DLE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 557.527 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(2R)-2-hydroxy-3,3-dimethyl-4-[(trihydroxy-lambda~5~-phosphanyl)oxy]butanoyl}-beta-alanyl-N-(2-{4-[fluoro(dihydroxy)-lambda~4~-sulfanyl]phenyl}ethyl)-beta-alaninamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DLE _cell.length_a 94.49 _cell.length_b 162.31 _cell.length_c 70.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DLE _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OH TYR 264 A TYR 264 1_555 I S8 SWC . B SWC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.653 ? covale ? covale2 B OG SER 37 B SER 36 1_555 I P33 SWC . B SWC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? # _chem_comp.formula 'C20 H33 F N3 O10 P S' _chem_comp.formula_weight 557.527 _chem_comp.id SWC _chem_comp.mon_nstd_flag . _chem_comp.name N-{(2R)-2-hydroxy-3,3-dimethyl-4-[(trihydroxy-lambda~5~-phosphanyl)oxy]butanoyl}-beta-alanyl-N-(2-{4-[fluoro(dihydroxy)-lambda~4~-sulfanyl]phenyl}ethyl)-beta-alaninamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O36 P33 SWC sing 329 n n P33 O32 SWC sing 330 n n P33 O34 SWC doub 331 n n O32 C27 SWC sing 332 n n C31 C26 SWC sing 333 n n C27 C26 SWC sing 334 n n C30 C26 SWC sing 335 n n C26 C25 SWC sing 336 n n O17 C14 SWC doub 337 n n C14 N13 SWC sing 338 n n C14 C15 SWC sing 339 n n C12 N13 SWC sing 340 n n C12 C1 SWC sing 341 n n C15 C16 SWC sing 342 n n C25 O29 SWC sing 343 n n C25 C24 SWC sing 344 n n C1 C2 SWC sing 345 n n C24 O28 SWC doub 346 n n C24 N23 SWC sing 347 n n C16 N18 SWC sing 348 n n N23 C21 SWC sing 349 n n C2 C3 SWC doub 350 n y C2 C7 SWC sing 351 n y C3 C4 SWC sing 352 n y N18 C19 SWC sing 353 n n C21 C20 SWC sing 354 n n C7 C6 SWC doub 355 n y C19 C20 SWC sing 356 n n C19 O22 SWC doub 357 n n C4 C5 SWC doub 358 n y C6 C5 SWC sing 359 n y C5 S8 SWC sing 360 n n O9 S8 SWC sing 361 n n S8 O10 SWC sing 362 n n C1 H1 SWC sing 363 n n C1 H2 SWC sing 364 n n C12 H3 SWC sing 365 n n C12 H4 SWC sing 366 n n C15 H5 SWC sing 367 n n C15 H6 SWC sing 368 n n C16 H7 SWC sing 369 n n C16 H8 SWC sing 370 n n C20 H9 SWC sing 371 n n C20 H10 SWC sing 372 n n C21 H11 SWC sing 373 n n C21 H12 SWC sing 374 n n C25 H13 SWC sing 375 n n C27 H14 SWC sing 376 n n C27 H15 SWC sing 377 n n C3 H16 SWC sing 378 n n C30 H17 SWC sing 379 n n C30 H18 SWC sing 380 n n C30 H19 SWC sing 381 n n C31 H20 SWC sing 382 n n C31 H21 SWC sing 383 n n C31 H22 SWC sing 384 n n C4 H23 SWC sing 385 n n C6 H24 SWC sing 386 n n C7 H25 SWC sing 387 n n N13 H26 SWC sing 388 n n N18 H27 SWC sing 389 n n N23 H28 SWC sing 390 n n O10 H29 SWC sing 391 n n O29 H30 SWC sing 392 n n O36 H32 SWC sing 393 n n O9 H33 SWC sing 394 n n S8 F1 SWC sing 395 n n P33 O1 SWC sing 396 n n O1 H35 SWC sing 397 n n # _atom_sites.entry_id 8DLE _atom_sites.fract_transf_matrix[1][1] 0.010583 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006161 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PLP A 1 401 1 PLP PLP . D 4 EDO A 1 402 2 EDO EDO . E 4 EDO A 1 403 3 EDO EDO . F 5 SO4 A 1 404 3 SO4 SO4 . G 5 SO4 A 1 405 94 SO4 SO4 . H 5 SO4 A 1 406 95 SO4 SO4 . I 6 SWC B 1 101 1 SWC BSF . J 7 HOH A 1 501 48 HOH HOH . J 7 HOH A 2 502 82 HOH HOH . J 7 HOH A 3 503 4 HOH HOH . J 7 HOH A 4 504 7 HOH HOH . J 7 HOH A 5 505 64 HOH HOH . J 7 HOH A 6 506 13 HOH HOH . J 7 HOH A 7 507 10 HOH HOH . J 7 HOH A 8 508 51 HOH HOH . J 7 HOH A 9 509 31 HOH HOH . J 7 HOH A 10 510 35 HOH HOH . J 7 HOH A 11 511 37 HOH HOH . J 7 HOH A 12 512 57 HOH HOH . J 7 HOH A 13 513 22 HOH HOH . J 7 HOH A 14 514 71 HOH HOH . J 7 HOH A 15 515 42 HOH HOH . J 7 HOH A 16 516 83 HOH HOH . J 7 HOH A 17 517 29 HOH HOH . J 7 HOH A 18 518 52 HOH HOH . J 7 HOH A 19 519 55 HOH HOH . J 7 HOH A 20 520 39 HOH HOH . J 7 HOH A 21 521 8 HOH HOH . J 7 HOH A 22 522 32 HOH HOH . J 7 HOH A 23 523 30 HOH HOH . J 7 HOH A 24 524 61 HOH HOH . J 7 HOH A 25 525 38 HOH HOH . J 7 HOH A 26 526 16 HOH HOH . J 7 HOH A 27 527 1 HOH HOH . J 7 HOH A 28 528 2 HOH HOH . J 7 HOH A 29 529 27 HOH HOH . J 7 HOH A 30 530 15 HOH HOH . J 7 HOH A 31 531 65 HOH HOH . J 7 HOH A 32 532 23 HOH HOH . J 7 HOH A 33 533 56 HOH HOH . J 7 HOH A 34 534 3 HOH HOH . J 7 HOH A 35 535 59 HOH HOH . J 7 HOH A 36 536 5 HOH HOH . J 7 HOH A 37 537 40 HOH HOH . J 7 HOH A 38 538 6 HOH HOH . J 7 HOH A 39 539 54 HOH HOH . J 7 HOH A 40 540 62 HOH HOH . J 7 HOH A 41 541 9 HOH HOH . J 7 HOH A 42 542 33 HOH HOH . J 7 HOH A 43 543 34 HOH HOH . J 7 HOH A 44 544 11 HOH HOH . J 7 HOH A 45 545 25 HOH HOH . J 7 HOH A 46 546 63 HOH HOH . J 7 HOH A 47 547 28 HOH HOH . J 7 HOH A 48 548 24 HOH HOH . J 7 HOH A 49 549 26 HOH HOH . J 7 HOH A 50 550 58 HOH HOH . J 7 HOH A 51 551 66 HOH HOH . J 7 HOH A 52 552 75 HOH HOH . J 7 HOH A 53 553 60 HOH HOH . J 7 HOH A 54 554 46 HOH HOH . J 7 HOH A 55 555 18 HOH HOH . J 7 HOH A 56 556 92 HOH HOH . J 7 HOH A 57 557 43 HOH HOH . J 7 HOH A 58 558 68 HOH HOH . J 7 HOH A 59 559 41 HOH HOH . J 7 HOH A 60 560 50 HOH HOH . J 7 HOH A 61 561 21 HOH HOH . J 7 HOH A 62 562 20 HOH HOH . J 7 HOH A 63 563 86 HOH HOH . J 7 HOH A 64 564 88 HOH HOH . J 7 HOH A 65 565 84 HOH HOH . J 7 HOH A 66 566 47 HOH HOH . J 7 HOH A 67 567 14 HOH HOH . J 7 HOH A 68 568 80 HOH HOH . J 7 HOH A 69 569 19 HOH HOH . J 7 HOH A 70 570 89 HOH HOH . J 7 HOH A 71 571 87 HOH HOH . J 7 HOH A 72 572 70 HOH HOH . J 7 HOH A 73 573 44 HOH HOH . J 7 HOH A 74 574 78 HOH HOH . J 7 HOH A 75 575 93 HOH HOH . J 7 HOH A 76 576 67 HOH HOH . J 7 HOH A 77 577 79 HOH HOH . J 7 HOH A 78 578 91 HOH HOH . J 7 HOH A 79 579 17 HOH HOH . J 7 HOH A 80 580 85 HOH HOH . J 7 HOH A 81 581 72 HOH HOH . J 7 HOH A 82 582 69 HOH HOH . J 7 HOH A 83 583 49 HOH HOH . J 7 HOH A 84 584 90 HOH HOH . J 7 HOH A 85 585 81 HOH HOH . J 7 HOH A 86 586 73 HOH HOH . J 7 HOH A 87 587 74 HOH HOH . J 7 HOH A 88 588 76 HOH HOH . K 7 HOH B 1 201 36 HOH HOH . K 7 HOH B 2 202 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SWC . . . I 6 -7.255 31.664 -33.735 1 81.47 ? C1 SWC 101 B 1 HETATM 2 C C12 SWC . . . I 6 -7.995 32.305 -34.903 1 73.33 ? C12 SWC 101 B 1 HETATM 3 C C14 SWC . . . I 6 -8.987 34.527 -34.952 1 91.39 ? C14 SWC 101 B 1 HETATM 4 C C15 SWC . . . I 6 -8.79 35.98 -34.594 1 94.07 ? C15 SWC 101 B 1 HETATM 5 C C16 SWC . . . I 6 -8.327 36.073 -33.145 1 92.59 ? C16 SWC 101 B 1 HETATM 6 C C19 SWC . . . I 6 -9.783 36.403 -31.235 1 107.45 ? C19 SWC 101 B 1 HETATM 7 C C2 SWC . . . I 6 -8.098 31.736 -32.482 1 89.7 ? C2 SWC 101 B 1 HETATM 8 C C20 SWC . . . I 6 -11.212 36.203 -30.785 1 108.41 ? C20 SWC 101 B 1 HETATM 9 C C21 SWC . . . I 6 -12.131 36.265 -32 1 108.21 ? C21 SWC 101 B 1 HETATM 10 C C24 SWC . . . I 6 -12.58 38.217 -33.391 1 116.43 ? C24 SWC 101 B 1 HETATM 11 C C25 SWC . . . I 6 -12.064 39.117 -34.479 1 114.16 ? C25 SWC 101 B 1 HETATM 12 C C26 SWC . . . I 6 -12.622 38.721 -35.844 1 112.81 ? C26 SWC 101 B 1 HETATM 13 C C27 SWC . . . I 6 -14.009 39.317 -36.036 1 111.01 ? C27 SWC 101 B 1 HETATM 14 C C3 SWC . . . I 6 -9.247 30.961 -32.375 1 90.72 ? C3 SWC 101 B 1 HETATM 15 C C30 SWC . . . I 6 -12.692 37.206 -35.992 1 105.66 ? C30 SWC 101 B 1 HETATM 16 C C31 SWC . . . I 6 -11.7 39.274 -36.925 1 111.31 ? C31 SWC 101 B 1 HETATM 17 C C4 SWC . . . I 6 -10.022 31.021 -31.222 1 90.79 ? C4 SWC 101 B 1 HETATM 18 C C5 SWC . . . I 6 -9.646 31.853 -30.174 1 98.46 ? C5 SWC 101 B 1 HETATM 19 C C6 SWC . . . I 6 -8.497 32.629 -30.281 1 86.84 ? C6 SWC 101 B 1 HETATM 20 C C7 SWC . . . I 6 -7.72 32.566 -31.433 1 84.52 ? C7 SWC 101 B 1 HETATM 21 N N13 SWC . . . I 6 -7.911 33.752 -34.856 1 76.43 ? N13 SWC 101 B 1 HETATM 22 N N18 SWC . . . I 6 -9.357 35.626 -32.226 1 105.49 ? N18 SWC 101 B 1 HETATM 23 N N23 SWC . . . I 6 -11.729 37.303 -32.931 1 116.85 ? N23 SWC 101 B 1 HETATM 24 O O10 SWC . . . I 6 -9.741 32.429 -27.77 1 91.27 ? O10 SWC 101 B 1 HETATM 25 O O17 SWC . . . I 6 -10.079 34.115 -35.308 1 92.45 ? O17 SWC 101 B 1 HETATM 26 O O22 SWC . . . I 6 -9.076 37.239 -30.696 1 105.83 ? O22 SWC 101 B 1 HETATM 27 O O28 SWC . . . I 6 -13.718 38.339 -32.966 1 113.42 ? O28 SWC 101 B 1 HETATM 28 O O29 SWC . . . I 6 -12.439 40.47 -34.19 1 102.98 ? O29 SWC 101 B 1 HETATM 29 O O32 SWC . . . I 6 -14.571 38.825 -37.252 1 116.41 ? O32 SWC 101 B 1 HETATM 30 O O34 SWC . . . I 6 -16.657 40.223 -36.847 1 112.77 ? O34 SWC 101 B 1 HETATM 31 O O36 SWC . . . I 6 -16.657 38.555 -38.691 1 119.67 ? O36 SWC 101 B 1 HETATM 32 O O9 SWC . . . I 6 -11.647 32.808 -29.069 1 110.57 ? O9 SWC 101 B 1 HETATM 33 P P33 SWC . . . I 6 -15.832 39.564 -37.927 1 120.58 ? P33 SWC 101 B 1 HETATM 34 S S8 SWC . . . I 6 -10.538 31.923 -28.852 1 126.67 ? S8 SWC 101 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #