data_8DME
#
_model_server_result.job_id            x55xlJUzm7r0fy6iLzaX_Q 
_model_server_result.datetime_utc      '2024-10-18 19:24:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dme 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":1103}' 
#
_entry.id    8DME 
#
_exptl.entry_id    8DME 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 398 A CYS 400 1_555 C FE HEM . A HEM 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc2 B SG CYS 398 B CYS 400 1_555 L FE HEM . B HEM 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 218 n n 
N1 C10 FMN doub 219 n n 
C2 O2 FMN doub 220 n n 
C2 N3 FMN sing 221 n n 
N3 C4 FMN sing 222 n n 
N3 HN3 FMN sing 223 n n 
C4 O4 FMN doub 224 n n 
C4 C4A FMN sing 225 n n 
C4A N5 FMN doub 226 n n 
C4A C10 FMN sing 227 n n 
N5 C5A FMN sing 228 n n 
C5A C6 FMN doub 229 n y 
C5A C9A FMN sing 230 n y 
C6 C7 FMN sing 231 n y 
C6 H6 FMN sing 232 n n 
C7 C7M FMN sing 233 n n 
C7 C8 FMN doub 234 n y 
C7M HM71 FMN sing 235 n n 
C7M HM72 FMN sing 236 n n 
C7M HM73 FMN sing 237 n n 
C8 C8M FMN sing 238 n n 
C8 C9 FMN sing 239 n y 
C8M HM81 FMN sing 240 n n 
C8M HM82 FMN sing 241 n n 
C8M HM83 FMN sing 242 n n 
C9 C9A FMN doub 243 n y 
C9 H9 FMN sing 244 n n 
C9A N10 FMN sing 245 n n 
N10 C10 FMN sing 246 n n 
N10 C1' FMN sing 247 n n 
C1' C2' FMN sing 248 n n 
C1' "H1'1" FMN sing 249 n n 
C1' "H1'2" FMN sing 250 n n 
C2' O2' FMN sing 251 n n 
C2' C3' FMN sing 252 n n 
C2' H2' FMN sing 253 n n 
O2' HO2' FMN sing 254 n n 
C3' O3' FMN sing 255 n n 
C3' C4' FMN sing 256 n n 
C3' H3' FMN sing 257 n n 
O3' HO3' FMN sing 258 n n 
C4' O4' FMN sing 259 n n 
C4' C5' FMN sing 260 n n 
C4' H4' FMN sing 261 n n 
O4' HO4' FMN sing 262 n n 
C5' O5' FMN sing 263 n n 
C5' "H5'1" FMN sing 264 n n 
C5' "H5'2" FMN sing 265 n n 
O5' P FMN sing 266 n n 
P O1P FMN doub 267 n n 
P O2P FMN sing 268 n n 
P O3P FMN sing 269 n n 
O2P HOP2 FMN sing 270 n n 
O3P HOP3 FMN sing 271 n n 
#
_atom_sites.entry_id                     8DME 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 1101 501 HEM HEM . 
D 3 1C6 A 1 1102 502 1C6 1C6 . 
E 4 FMN A 1 1103 1002 FMN FMN . 
F 5 FAD A 1 1104 1101 FAD FAD . 
G 6 SO4 A 1 1105 1102 SO4 SO4 . 
H 6 SO4 A 1 1106 1103 SO4 SO4 . 
I 6 SO4 A 1 1107 1104 SO4 SO4 . 
J 7 PG4 A 1 1108 1105 PG4 PG4 . 
K 7 PG4 A 1 1109 1106 PG4 PG4 . 
L 2 HEM B 1 1101 501 HEM HEM . 
M 3 1C6 B 1 1102 502 1C6 1C6 . 
N 4 FMN B 1 1103 1002 FMN FMN . 
O 5 FAD B 1 1104 1101 FAD FAD . 
P 6 SO4 B 1 1105 1102 SO4 SO4 . 
Q 6 SO4 B 1 1106 1103 SO4 SO4 . 
R 6 SO4 B 1 1107 1104 SO4 SO4 . 
S 7 PG4 B 1 1108 1105 PG4 PG4 . 
T 7 PG4 B 1 1109 1106 PG4 PG4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . N 4 182.508 185.374 141.948 1 40.08 ? N1 FMN 1103 B 1 
HETATM 2 C C2 FMN . . . N 4 182.353 186.6 141.425 1 34.03 ? C2 FMN 1103 B 1 
HETATM 3 O O2 FMN . . . N 4 181.941 187.528 142.104 1 29.21 ? O2 FMN 1103 B 1 
HETATM 4 N N3 FMN . . . N 4 182.639 186.9 140.079 1 39.03 ? N3 FMN 1103 B 1 
HETATM 5 C C4 FMN . . . N 4 183.116 185.862 139.259 1 35.3 ? C4 FMN 1103 B 1 
HETATM 6 O O4 FMN . . . N 4 183.365 186.13 138.105 1 44.35 ? O4 FMN 1103 B 1 
HETATM 7 C C4A FMN . . . N 4 183.345 184.597 139.788 1 36.49 ? C4A FMN 1103 B 1 
HETATM 8 N N5 FMN . . . N 4 183.738 183.572 139.043 1 41.99 ? N5 FMN 1103 B 1 
HETATM 9 C C5A FMN . . . N 4 183.744 182.31 139.463 1 38.59 ? C5A FMN 1103 B 1 
HETATM 10 C C6 FMN . . . N 4 184.23 181.26 138.67 1 32.1 ? C6 FMN 1103 B 1 
HETATM 11 C C7 FMN . . . N 4 184.282 179.946 139.123 1 28.33 ? C7 FMN 1103 B 1 
HETATM 12 C C7M FMN . . . N 4 184.793 178.794 138.261 1 27.01 ? C7M FMN 1103 B 1 
HETATM 13 C C8 FMN . . . N 4 183.846 179.649 140.415 1 36.12 ? C8 FMN 1103 B 1 
HETATM 14 C C8M FMN . . . N 4 183.878 178.209 140.949 1 38.93 ? C8M FMN 1103 B 1 
HETATM 15 C C9 FMN . . . N 4 183.407 180.691 141.216 1 41.98 ? C9 FMN 1103 B 1 
HETATM 16 C C9A FMN . . . N 4 183.34 182.008 140.781 1 39.2 ? C9A FMN 1103 B 1 
HETATM 17 N N10 FMN . . . N 4 182.912 183.048 141.62 1 39.67 ? N10 FMN 1103 B 1 
HETATM 18 C C10 FMN . . . N 4 182.952 184.379 141.135 1 41.27 ? C10 FMN 1103 B 1 
HETATM 19 C C1' FMN . . . N 4 182.518 182.827 143.024 1 31.19 ? C1' FMN 1103 B 1 
HETATM 20 C C2' FMN . . . N 4 181.114 182.233 142.989 1 28.21 ? C2' FMN 1103 B 1 
HETATM 21 O O2' FMN . . . N 4 180.176 183.147 142.398 1 32.29 ? O2' FMN 1103 B 1 
HETATM 22 C C3' FMN . . . N 4 180.599 181.946 144.419 1 29.93 ? C3' FMN 1103 B 1 
HETATM 23 O O3' FMN . . . N 4 181.145 180.666 144.813 1 49.41 ? O3' FMN 1103 B 1 
HETATM 24 C C4' FMN . . . N 4 179.073 181.738 144.309 1 31.62 ? C4' FMN 1103 B 1 
HETATM 25 O O4' FMN . . . N 4 178.799 181.859 145.709 1 43.55 ? O4' FMN 1103 B 1 
HETATM 26 C C5' FMN . . . N 4 178.758 180.305 143.855 1 25.56 ? C5' FMN 1103 B 1 
HETATM 27 O O5' FMN . . . N 4 177.218 180.35 143.822 1 27.5 ? O5' FMN 1103 B 1 
HETATM 28 P P FMN . . . N 4 176.45 179.185 143.389 1 25.96 ? P FMN 1103 B 1 
HETATM 29 O O1P FMN . . . N 4 174.953 179.386 143.503 1 24.32 ? O1P FMN 1103 B 1 
HETATM 30 O O2P FMN . . . N 4 176.755 177.92 144.174 1 22.52 ? O2P FMN 1103 B 1 
HETATM 31 O O3P FMN . . . N 4 176.687 178.802 141.95 1 22.52 ? O3P FMN 1103 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#