data_8DME
#
_model_server_result.job_id            37idsUGuCKkPgPghqW2vIg 
_model_server_result.datetime_utc      '2024-10-18 19:27:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dme 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1104}' 
#
_entry.id    8DME 
#
_exptl.entry_id    8DME 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 398 A CYS 400 1_555 C FE HEM . A HEM 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc2 B SG CYS 398 B CYS 400 1_555 L FE HEM . B HEM 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 127 n n 
PA O2A FAD sing 128 n n 
PA O5B FAD sing 129 n n 
PA O3P FAD sing 130 n n 
O2A HOA2 FAD sing 131 n n 
O5B C5B FAD sing 132 n n 
C5B C4B FAD sing 133 n n 
C5B H51A FAD sing 134 n n 
C5B H52A FAD sing 135 n n 
C4B O4B FAD sing 136 n n 
C4B C3B FAD sing 137 n n 
C4B H4B FAD sing 138 n n 
O4B C1B FAD sing 139 n n 
C3B O3B FAD sing 140 n n 
C3B C2B FAD sing 141 n n 
C3B H3B FAD sing 142 n n 
O3B HO3A FAD sing 143 n n 
C2B O2B FAD sing 144 n n 
C2B C1B FAD sing 145 n n 
C2B H2B FAD sing 146 n n 
O2B HO2A FAD sing 147 n n 
C1B N9A FAD sing 148 n n 
C1B H1B FAD sing 149 n n 
N9A C8A FAD sing 150 n y 
N9A C4A FAD sing 151 n y 
C8A N7A FAD doub 152 n y 
C8A H8A FAD sing 153 n n 
N7A C5A FAD sing 154 n y 
C5A C6A FAD sing 155 n y 
C5A C4A FAD doub 156 n y 
C6A N6A FAD sing 157 n n 
C6A N1A FAD doub 158 n y 
N6A H61A FAD sing 159 n n 
N6A H62A FAD sing 160 n n 
N1A C2A FAD sing 161 n y 
C2A N3A FAD doub 162 n y 
C2A H2A FAD sing 163 n n 
N3A C4A FAD sing 164 n y 
N1 C2 FAD sing 165 n n 
N1 C10 FAD doub 166 n n 
C2 O2 FAD doub 167 n n 
C2 N3 FAD sing 168 n n 
N3 C4 FAD sing 169 n n 
N3 HN3 FAD sing 170 n n 
C4 O4 FAD doub 171 n n 
C4 C4X FAD sing 172 n n 
C4X N5 FAD doub 173 n n 
C4X C10 FAD sing 174 n n 
N5 C5X FAD sing 175 n n 
C5X C6 FAD doub 176 n y 
C5X C9A FAD sing 177 n y 
C6 C7 FAD sing 178 n y 
C6 H6 FAD sing 179 n n 
C7 C7M FAD sing 180 n n 
C7 C8 FAD doub 181 n y 
C7M HM71 FAD sing 182 n n 
C7M HM72 FAD sing 183 n n 
C7M HM73 FAD sing 184 n n 
C8 C8M FAD sing 185 n n 
C8 C9 FAD sing 186 n y 
C8M HM81 FAD sing 187 n n 
C8M HM82 FAD sing 188 n n 
C8M HM83 FAD sing 189 n n 
C9 C9A FAD doub 190 n y 
C9 H9 FAD sing 191 n n 
C9A N10 FAD sing 192 n n 
N10 C10 FAD sing 193 n n 
N10 C1' FAD sing 194 n n 
C1' C2' FAD sing 195 n n 
C1' "H1'1" FAD sing 196 n n 
C1' "H1'2" FAD sing 197 n n 
C2' O2' FAD sing 198 n n 
C2' C3' FAD sing 199 n n 
C2' H2' FAD sing 200 n n 
O2' HO2' FAD sing 201 n n 
C3' O3' FAD sing 202 n n 
C3' C4' FAD sing 203 n n 
C3' H3' FAD sing 204 n n 
O3' HO3' FAD sing 205 n n 
C4' O4' FAD sing 206 n n 
C4' C5' FAD sing 207 n n 
C4' H4' FAD sing 208 n n 
O4' HO4' FAD sing 209 n n 
C5' O5' FAD sing 210 n n 
C5' "H5'1" FAD sing 211 n n 
C5' "H5'2" FAD sing 212 n n 
O5' P FAD sing 213 n n 
P O1P FAD doub 214 n n 
P O2P FAD sing 215 n n 
P O3P FAD sing 216 n n 
O2P HOP2 FAD sing 217 n n 
#
_atom_sites.entry_id                     8DME 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 1101 501 HEM HEM . 
D 3 1C6 A 1 1102 502 1C6 1C6 . 
E 4 FMN A 1 1103 1002 FMN FMN . 
F 5 FAD A 1 1104 1101 FAD FAD . 
G 6 SO4 A 1 1105 1102 SO4 SO4 . 
H 6 SO4 A 1 1106 1103 SO4 SO4 . 
I 6 SO4 A 1 1107 1104 SO4 SO4 . 
J 7 PG4 A 1 1108 1105 PG4 PG4 . 
K 7 PG4 A 1 1109 1106 PG4 PG4 . 
L 2 HEM B 1 1101 501 HEM HEM . 
M 3 1C6 B 1 1102 502 1C6 1C6 . 
N 4 FMN B 1 1103 1002 FMN FMN . 
O 5 FAD B 1 1104 1101 FAD FAD . 
P 6 SO4 B 1 1105 1102 SO4 SO4 . 
Q 6 SO4 B 1 1106 1103 SO4 SO4 . 
R 6 SO4 B 1 1107 1104 SO4 SO4 . 
S 7 PG4 B 1 1108 1105 PG4 PG4 . 
T 7 PG4 B 1 1109 1106 PG4 PG4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . F 5 180.722 212.488 161.436 1 24.5 ? PA FAD 1104 A 1 
HETATM 2 O O1A FAD . . . F 5 180.188 212.667 162.798 1 26.88 ? O1A FAD 1104 A 1 
HETATM 3 O O2A FAD . . . F 5 180.822 211.058 160.941 1 24.05 ? O2A FAD 1104 A 1 
HETATM 4 O O5B FAD . . . F 5 179.816 213.212 160.35 1 23.68 ? O5B FAD 1104 A 1 
HETATM 5 C C5B FAD . . . F 5 180.168 212.949 159.019 1 27.69 ? C5B FAD 1104 A 1 
HETATM 6 C C4B FAD . . . F 5 179.007 213.26 158.157 1 28.51 ? C4B FAD 1104 A 1 
HETATM 7 O O4B FAD . . . F 5 178.497 214.559 158.476 1 29.59 ? O4B FAD 1104 A 1 
HETATM 8 C C3B FAD . . . F 5 179.406 213.265 156.677 1 26.57 ? C3B FAD 1104 A 1 
HETATM 9 O O3B FAD . . . F 5 178.304 212.65 156.028 1 28.76 ? O3B FAD 1104 A 1 
HETATM 10 C C2B FAD . . . F 5 179.349 214.715 156.314 1 28.32 ? C2B FAD 1104 A 1 
HETATM 11 O O2B FAD . . . F 5 178.938 214.925 154.994 1 26.85 ? O2B FAD 1104 A 1 
HETATM 12 C C1B FAD . . . F 5 178.224 215.234 157.256 1 30.71 ? C1B FAD 1104 A 1 
HETATM 13 N N9A FAD . . . F 5 178.188 216.697 157.469 1 29.62 ? N9A FAD 1104 A 1 
HETATM 14 C C8A FAD . . . F 5 179.17 217.589 157.251 1 28.58 ? C8A FAD 1104 A 1 
HETATM 15 N N7A FAD . . . F 5 178.749 218.796 157.536 1 29.8 ? N7A FAD 1104 A 1 
HETATM 16 C C5A FAD . . . F 5 177.525 218.744 158.004 1 30.81 ? C5A FAD 1104 A 1 
HETATM 17 C C6A FAD . . . F 5 176.654 219.71 158.47 1 33.98 ? C6A FAD 1104 A 1 
HETATM 18 N N6A FAD . . . F 5 177.041 220.965 158.564 1 31.01 ? N6A FAD 1104 A 1 
HETATM 19 N N1A FAD . . . F 5 175.376 219.366 158.888 1 32.74 ? N1A FAD 1104 A 1 
HETATM 20 C C2A FAD . . . F 5 175.067 218.059 158.82 1 31.41 ? C2A FAD 1104 A 1 
HETATM 21 N N3A FAD . . . F 5 175.923 217.092 158.35 1 27.33 ? N3A FAD 1104 A 1 
HETATM 22 C C4A FAD . . . F 5 177.152 217.423 157.966 1 32.09 ? C4A FAD 1104 A 1 
HETATM 23 N N1 FAD . . . F 5 189.488 212.64 157.072 1 25.97 ? N1 FAD 1104 A 1 
HETATM 24 C C2 FAD . . . F 5 190.544 213.474 157.394 1 25.73 ? C2 FAD 1104 A 1 
HETATM 25 O O2 FAD . . . F 5 190.404 214.572 157.932 1 25.42 ? O2 FAD 1104 A 1 
HETATM 26 N N3 FAD . . . F 5 191.825 213.067 157.17 1 27.14 ? N3 FAD 1104 A 1 
HETATM 27 C C4 FAD . . . F 5 192.07 211.892 156.513 1 26.78 ? C4 FAD 1104 A 1 
HETATM 28 O O4 FAD . . . F 5 193.235 211.565 156.328 1 28.39 ? O4 FAD 1104 A 1 
HETATM 29 C C4X FAD . . . F 5 191.042 211.065 156.145 1 27.72 ? C4X FAD 1104 A 1 
HETATM 30 N N5 FAD . . . F 5 191.329 209.865 155.501 1 27.91 ? N5 FAD 1104 A 1 
HETATM 31 C C5X FAD . . . F 5 190.298 209.018 155.176 1 27.91 ? C5X FAD 1104 A 1 
HETATM 32 C C6 FAD . . . F 5 190.542 207.781 154.566 1 27.19 ? C6 FAD 1104 A 1 
HETATM 33 C C7 FAD . . . F 5 189.46 206.985 154.183 1 29.37 ? C7 FAD 1104 A 1 
HETATM 34 C C7M FAD . . . F 5 189.645 205.65 153.475 1 29.2 ? C7M FAD 1104 A 1 
HETATM 35 C C8 FAD . . . F 5 188.151 207.329 154.524 1 27.25 ? C8 FAD 1104 A 1 
HETATM 36 C C8M FAD . . . F 5 186.946 206.412 154.137 1 18.61 ? C8M FAD 1104 A 1 
HETATM 37 C C9 FAD . . . F 5 187.972 208.511 155.192 1 23.77 ? C9 FAD 1104 A 1 
HETATM 38 C C9A FAD . . . F 5 188.994 209.374 155.505 1 26.93 ? C9A FAD 1104 A 1 
HETATM 39 N N10 FAD . . . F 5 188.724 210.59 156.137 1 28.36 ? N10 FAD 1104 A 1 
HETATM 40 C C10 FAD . . . F 5 189.751 211.427 156.478 1 27.03 ? C10 FAD 1104 A 1 
HETATM 41 C C1' FAD . . . F 5 187.327 210.998 156.513 1 25.6 ? C1' FAD 1104 A 1 
HETATM 42 C C2' FAD . . . F 5 187.236 210.565 158.014 1 25.45 ? C2' FAD 1104 A 1 
HETATM 43 O O2' FAD . . . F 5 187.265 209.185 158.216 1 22.87 ? O2' FAD 1104 A 1 
HETATM 44 C C3' FAD . . . F 5 185.994 210.991 158.744 1 23.59 ? C3' FAD 1104 A 1 
HETATM 45 O O3' FAD . . . F 5 184.928 210.573 157.968 1 21.32 ? O3' FAD 1104 A 1 
HETATM 46 C C4' FAD . . . F 5 185.861 212.501 158.905 1 25.84 ? C4' FAD 1104 A 1 
HETATM 47 O O4' FAD . . . F 5 186.832 212.916 159.804 1 24.51 ? O4' FAD 1104 A 1 
HETATM 48 C C5' FAD . . . F 5 184.459 212.826 159.446 1 26.37 ? C5' FAD 1104 A 1 
HETATM 49 O O5' FAD . . . F 5 184.038 211.948 160.493 1 26.08 ? O5' FAD 1104 A 1 
HETATM 50 P P FAD . . . F 5 183.478 212.641 161.842 1 26.15 ? P FAD 1104 A 1 
HETATM 51 O O1P FAD . . . F 5 183.11 211.562 162.812 1 23.66 ? O1P FAD 1104 A 1 
HETATM 52 O O2P FAD . . . F 5 184.306 213.815 162.388 1 20.52 ? O2P FAD 1104 A 1 
HETATM 53 O O3P FAD . . . F 5 182.112 213.315 161.434 1 22.29 ? O3P FAD 1104 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           53 
#