data_8DMM # _model_server_result.job_id fiVdgafYDbCr-zebz09vNQ _model_server_result.datetime_utc '2024-12-09 01:06:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dmm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 8DMM # _exptl.entry_id 8DMM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 544.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADP ORTHOVANADATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DMM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DMM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H17 N5 O14 P2 V' _chem_comp.formula_weight 544.156 _chem_comp.id AOV _chem_comp.mon_nstd_flag . _chem_comp.name 'ADP ORTHOVANADATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B AOV doub 13 n n PB O2B AOV sing 14 n n PB O3B AOV sing 15 n n PB O3A AOV sing 16 n n O3B VG AOV sing 17 n n PA O1A AOV doub 18 n n PA O2A AOV sing 19 n n PA O3A AOV sing 20 n n PA O5' AOV sing 21 n n O5' C5' AOV sing 22 n n C5' C4' AOV sing 23 n n C4' O4' AOV sing 24 n n C4' C3' AOV sing 25 n n O4' C1' AOV sing 26 n n C3' O3' AOV sing 27 n n C3' C2' AOV sing 28 n n C2' O2' AOV sing 29 n n C2' C1' AOV sing 30 n n C1' N9 AOV sing 31 n n N9 C8 AOV sing 32 n y N9 C4 AOV sing 33 n y C8 N7 AOV doub 34 n y N7 C5 AOV sing 35 n y C5 C6 AOV sing 36 n y C5 C4 AOV doub 37 n y C6 N6 AOV sing 38 n n C6 N1 AOV doub 39 n y N1 C2 AOV sing 40 n y C2 N3 AOV doub 41 n y N3 C4 AOV sing 42 n y VG O1G AOV doub 43 n n VG O2G AOV sing 44 n n VG O3G AOV sing 45 n n VG O4G AOV sing 46 n n O2B H2B AOV sing 47 n n O2A H2A AOV sing 48 n n C5' "H5'1" AOV sing 49 n n C5' "H5'2" AOV sing 50 n n C4' H4' AOV sing 51 n n C3' H3' AOV sing 52 n n C1' H1' AOV sing 53 n n O3' HA AOV sing 54 n n C2' H2' AOV sing 55 n n O2' HB AOV sing 56 n n C8 H8 AOV sing 57 n n N6 H61N AOV sing 58 n n N6 H62N AOV sing 59 n n C2 H2 AOV sing 60 n n O2G H2G1 AOV sing 61 n n O3G H3G1 AOV sing 62 n n O4G H4G1 AOV sing 63 n n # _atom_sites.entry_id 8DMM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AOV A 1 801 801 AOV AOV . D 3 KDL A 1 802 901 KDL KDL . E 2 AOV B 1 801 801 AOV AOV . F 3 KDL B 1 802 901 KDL KDL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB AOV . . . E 2 111.859 95.894 144.828 1 64.3 ? PB AOV 801 B 1 HETATM 2 O O1B AOV . . . E 2 110.377 95.895 145.123 1 64.3 ? O1B AOV 801 B 1 HETATM 3 O O2B AOV . . . E 2 112.62 95.56 146.088 1 64.3 ? O2B AOV 801 B 1 HETATM 4 O O3B AOV . . . E 2 112.311 97.392 144.294 1 64.3 ? O3B AOV 801 B 1 HETATM 5 P PA AOV . . . E 2 113.76 94.283 143.353 1 64.3 ? PA AOV 801 B 1 HETATM 6 O O1A AOV . . . E 2 114.626 95.497 143.111 1 64.3 ? O1A AOV 801 B 1 HETATM 7 O O2A AOV . . . E 2 114.275 93.519 144.547 1 64.3 ? O2A AOV 801 B 1 HETATM 8 O O3A AOV . . . E 2 112.209 94.77 143.664 1 64.3 ? O3A AOV 801 B 1 HETATM 9 O O5' AOV . . . E 2 113.825 93.298 142.019 1 64.3 ? O5' AOV 801 B 1 HETATM 10 C C5' AOV . . . E 2 114.6 93.738 140.923 1 64.3 ? C5' AOV 801 B 1 HETATM 11 C C4' AOV . . . E 2 116.041 93.315 141.141 1 64.3 ? C4' AOV 801 B 1 HETATM 12 O O4' AOV . . . E 2 116.403 92.498 140.225 1 64.3 ? O4' AOV 801 B 1 HETATM 13 C C3' AOV . . . E 2 117.052 94.646 141.053 1 64.3 ? C3' AOV 801 B 1 HETATM 14 O O3' AOV . . . E 2 118.193 94.474 141.988 1 64.3 ? O3' AOV 801 B 1 HETATM 15 C C2' AOV . . . E 2 117.463 94.688 139.895 1 64.3 ? C2' AOV 801 B 1 HETATM 16 O O2' AOV . . . E 2 118.852 95.305 139.859 1 64.3 ? O2' AOV 801 B 1 HETATM 17 C C1' AOV . . . E 2 117.533 93.166 139.461 1 64.3 ? C1' AOV 801 B 1 HETATM 18 N N9 AOV . . . E 2 117.364 93.027 138.142 1 64.3 ? N9 AOV 801 B 1 HETATM 19 C C8 AOV . . . E 2 118.29 92.597 137.297 1 64.3 ? C8 AOV 801 B 1 HETATM 20 N N7 AOV . . . E 2 117.792 92.575 136.065 1 64.3 ? N7 AOV 801 B 1 HETATM 21 C C5 AOV . . . E 2 116.517 93.001 136.127 1 64.3 ? C5 AOV 801 B 1 HETATM 22 C C6 AOV . . . E 2 115.495 93.194 135.176 1 64.3 ? C6 AOV 801 B 1 HETATM 23 N N6 AOV . . . E 2 115.733 92.903 133.762 1 64.3 ? N6 AOV 801 B 1 HETATM 24 N N1 AOV . . . E 2 114.311 93.641 135.575 1 64.3 ? N1 AOV 801 B 1 HETATM 25 C C2 AOV . . . E 2 114.071 93.911 136.854 1 64.3 ? C2 AOV 801 B 1 HETATM 26 N N3 AOV . . . E 2 115.013 93.741 137.773 1 64.3 ? N3 AOV 801 B 1 HETATM 27 C C4 AOV . . . E 2 116.237 93.29 137.447 1 64.3 ? C4 AOV 801 B 1 HETATM 28 V VG AOV . . . E 2 112.168 98.774 145.88 1 64.3 ? VG AOV 801 B 1 HETATM 29 O O1G AOV . . . E 2 112.576 97.906 147.751 1 64.3 ? O1G AOV 801 B 1 HETATM 30 O O2G AOV . . . E 2 110.122 98.665 145.393 1 64.3 ? O2G AOV 801 B 1 HETATM 31 O O3G AOV . . . E 2 113.906 99.542 144.973 1 64.3 ? O3G AOV 801 B 1 HETATM 32 O O4G AOV . . . E 2 111.697 100.819 146.033 1 64.3 ? O4G AOV 801 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 379 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #