data_8DN1
#
_model_server_result.job_id            ksZ_kHkAiTZrRLzg9-gZJw 
_model_server_result.datetime_utc      '2024-11-15 14:21:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dn1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    8DN1 
#
_exptl.entry_id    8DN1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.926 
_cell.angle_gamma         90 
_cell.entry_id            8DN1 
_cell.length_a            29.222 
_cell.length_b            66.833 
_cell.length_c            63.704 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DN1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8DN1 
_atom_sites.fract_transf_matrix[1][1]    0.034221 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001151 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014963 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015706 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 301 301 GOL GOL . 
C 2 GOL A 1 302 501 GOL GOL . 
D 3 RH6 A 1 303 701 RH6 CM1 . 
E 4 HOH A 1 401 94 HOH HOH . 
E 4 HOH A 2 402 142 HOH HOH . 
E 4 HOH A 3 403 136 HOH HOH . 
E 4 HOH A 4 404 143 HOH HOH . 
E 4 HOH A 5 405 141 HOH HOH . 
E 4 HOH A 6 406 72 HOH HOH . 
E 4 HOH A 7 407 87 HOH HOH . 
E 4 HOH A 8 408 153 HOH HOH . 
E 4 HOH A 9 409 123 HOH HOH . 
E 4 HOH A 10 410 21 HOH HOH . 
E 4 HOH A 11 411 165 HOH HOH . 
E 4 HOH A 12 412 80 HOH HOH . 
E 4 HOH A 13 413 57 HOH HOH . 
E 4 HOH A 14 414 46 HOH HOH . 
E 4 HOH A 15 415 167 HOH HOH . 
E 4 HOH A 16 416 67 HOH HOH . 
E 4 HOH A 17 417 63 HOH HOH . 
E 4 HOH A 18 418 58 HOH HOH . 
E 4 HOH A 19 419 20 HOH HOH . 
E 4 HOH A 20 420 88 HOH HOH . 
E 4 HOH A 21 421 95 HOH HOH . 
E 4 HOH A 22 422 92 HOH HOH . 
E 4 HOH A 23 423 111 HOH HOH . 
E 4 HOH A 24 424 11 HOH HOH . 
E 4 HOH A 25 425 112 HOH HOH . 
E 4 HOH A 26 426 75 HOH HOH . 
E 4 HOH A 27 427 144 HOH HOH . 
E 4 HOH A 28 428 149 HOH HOH . 
E 4 HOH A 29 429 51 HOH HOH . 
E 4 HOH A 30 430 66 HOH HOH . 
E 4 HOH A 31 431 55 HOH HOH . 
E 4 HOH A 32 432 10 HOH HOH . 
E 4 HOH A 33 433 140 HOH HOH . 
E 4 HOH A 34 434 119 HOH HOH . 
E 4 HOH A 35 435 90 HOH HOH . 
E 4 HOH A 36 436 8 HOH HOH . 
E 4 HOH A 37 437 44 HOH HOH . 
E 4 HOH A 38 438 154 HOH HOH . 
E 4 HOH A 39 439 39 HOH HOH . 
E 4 HOH A 40 440 45 HOH HOH . 
E 4 HOH A 41 441 26 HOH HOH . 
E 4 HOH A 42 442 22 HOH HOH . 
E 4 HOH A 43 443 147 HOH HOH . 
E 4 HOH A 44 444 34 HOH HOH . 
E 4 HOH A 45 445 71 HOH HOH . 
E 4 HOH A 46 446 79 HOH HOH . 
E 4 HOH A 47 447 49 HOH HOH . 
E 4 HOH A 48 448 76 HOH HOH . 
E 4 HOH A 49 449 36 HOH HOH . 
E 4 HOH A 50 450 114 HOH HOH . 
E 4 HOH A 51 451 64 HOH HOH . 
E 4 HOH A 52 452 30 HOH HOH . 
E 4 HOH A 53 453 15 HOH HOH . 
E 4 HOH A 54 454 133 HOH HOH . 
E 4 HOH A 55 455 7 HOH HOH . 
E 4 HOH A 56 456 118 HOH HOH . 
E 4 HOH A 57 457 121 HOH HOH . 
E 4 HOH A 58 458 23 HOH HOH . 
E 4 HOH A 59 459 17 HOH HOH . 
E 4 HOH A 60 460 4 HOH HOH . 
E 4 HOH A 61 461 84 HOH HOH . 
E 4 HOH A 62 462 2 HOH HOH . 
E 4 HOH A 63 463 9 HOH HOH . 
E 4 HOH A 64 464 86 HOH HOH . 
E 4 HOH A 65 465 41 HOH HOH . 
E 4 HOH A 66 466 12 HOH HOH . 
E 4 HOH A 67 467 16 HOH HOH . 
E 4 HOH A 68 468 138 HOH HOH . 
E 4 HOH A 69 469 60 HOH HOH . 
E 4 HOH A 70 470 81 HOH HOH . 
E 4 HOH A 71 471 43 HOH HOH . 
E 4 HOH A 72 472 42 HOH HOH . 
E 4 HOH A 73 473 115 HOH HOH . 
E 4 HOH A 74 474 19 HOH HOH . 
E 4 HOH A 75 475 135 HOH HOH . 
E 4 HOH A 76 476 25 HOH HOH . 
E 4 HOH A 77 477 101 HOH HOH . 
E 4 HOH A 78 478 56 HOH HOH . 
E 4 HOH A 79 479 1 HOH HOH . 
E 4 HOH A 80 480 48 HOH HOH . 
E 4 HOH A 81 481 160 HOH HOH . 
E 4 HOH A 82 482 127 HOH HOH . 
E 4 HOH A 83 483 150 HOH HOH . 
E 4 HOH A 84 484 14 HOH HOH . 
E 4 HOH A 85 485 50 HOH HOH . 
E 4 HOH A 86 486 31 HOH HOH . 
E 4 HOH A 87 487 27 HOH HOH . 
E 4 HOH A 88 488 91 HOH HOH . 
E 4 HOH A 89 489 32 HOH HOH . 
E 4 HOH A 90 490 37 HOH HOH . 
E 4 HOH A 91 491 77 HOH HOH . 
E 4 HOH A 92 492 69 HOH HOH . 
E 4 HOH A 93 493 124 HOH HOH . 
E 4 HOH A 94 494 104 HOH HOH . 
E 4 HOH A 95 495 3 HOH HOH . 
E 4 HOH A 96 496 28 HOH HOH . 
E 4 HOH A 97 497 116 HOH HOH . 
E 4 HOH A 98 498 122 HOH HOH . 
E 4 HOH A 99 499 148 HOH HOH . 
E 4 HOH A 100 500 29 HOH HOH . 
E 4 HOH A 101 501 18 HOH HOH . 
E 4 HOH A 102 502 97 HOH HOH . 
E 4 HOH A 103 503 5 HOH HOH . 
E 4 HOH A 104 504 73 HOH HOH . 
E 4 HOH A 105 505 33 HOH HOH . 
E 4 HOH A 106 506 38 HOH HOH . 
E 4 HOH A 107 507 6 HOH HOH . 
E 4 HOH A 108 508 40 HOH HOH . 
E 4 HOH A 109 509 162 HOH HOH . 
E 4 HOH A 110 510 24 HOH HOH . 
E 4 HOH A 111 511 54 HOH HOH . 
E 4 HOH A 112 512 13 HOH HOH . 
E 4 HOH A 113 513 168 HOH HOH . 
E 4 HOH A 114 514 93 HOH HOH . 
E 4 HOH A 115 515 82 HOH HOH . 
E 4 HOH A 116 516 137 HOH HOH . 
E 4 HOH A 117 517 166 HOH HOH . 
E 4 HOH A 118 518 99 HOH HOH . 
E 4 HOH A 119 519 53 HOH HOH . 
E 4 HOH A 120 520 155 HOH HOH . 
E 4 HOH A 121 521 62 HOH HOH . 
E 4 HOH A 122 522 120 HOH HOH . 
E 4 HOH A 123 523 105 HOH HOH . 
E 4 HOH A 124 524 139 HOH HOH . 
E 4 HOH A 125 525 65 HOH HOH . 
E 4 HOH A 126 526 117 HOH HOH . 
E 4 HOH A 127 527 110 HOH HOH . 
E 4 HOH A 128 528 100 HOH HOH . 
E 4 HOH A 129 529 106 HOH HOH . 
E 4 HOH A 130 530 102 HOH HOH . 
E 4 HOH A 131 531 130 HOH HOH . 
E 4 HOH A 132 532 47 HOH HOH . 
E 4 HOH A 133 533 108 HOH HOH . 
E 4 HOH A 134 534 78 HOH HOH . 
E 4 HOH A 135 535 173 HOH HOH . 
E 4 HOH A 136 536 158 HOH HOH . 
E 4 HOH A 137 537 125 HOH HOH . 
E 4 HOH A 138 538 129 HOH HOH . 
E 4 HOH A 139 539 169 HOH HOH . 
E 4 HOH A 140 540 146 HOH HOH . 
E 4 HOH A 141 541 74 HOH HOH . 
E 4 HOH A 142 542 172 HOH HOH . 
E 4 HOH A 143 543 103 HOH HOH . 
E 4 HOH A 144 544 98 HOH HOH . 
E 4 HOH A 145 545 171 HOH HOH . 
E 4 HOH A 146 546 145 HOH HOH . 
E 4 HOH A 147 547 70 HOH HOH . 
E 4 HOH A 148 548 35 HOH HOH . 
E 4 HOH A 149 549 68 HOH HOH . 
E 4 HOH A 150 550 61 HOH HOH . 
E 4 HOH A 151 551 163 HOH HOH . 
E 4 HOH A 152 552 107 HOH HOH . 
E 4 HOH A 153 553 164 HOH HOH . 
E 4 HOH A 154 554 59 HOH HOH . 
E 4 HOH A 155 555 83 HOH HOH . 
E 4 HOH A 156 556 109 HOH HOH . 
E 4 HOH A 157 557 156 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 9.366 -13.475 26.988 1 39.58 ? C1 GOL 301 A 1 
HETATM 2 O O1 GOL . . . B 2 9.621 -12.484 28.006 1 43.08 ? O1 GOL 301 A 1 
HETATM 3 C C2 GOL . . . B 2 10.358 -14.637 27.111 1 41.61 ? C2 GOL 301 A 1 
HETATM 4 O O2 GOL . . . B 2 10.204 -15.124 28.395 1 40.6 ? O2 GOL 301 A 1 
HETATM 5 C C3 GOL . . . B 2 10.122 -15.83 26.231 1 39.49 ? C3 GOL 301 A 1 
HETATM 6 O O3 GOL . . . B 2 11.156 -16.804 26.415 1 42 ? O3 GOL 301 A 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#