data_8DN1 # _model_server_result.job_id xWNUm62H9zgURkdw2vCMSw _model_server_result.datetime_utc '2024-11-15 14:55:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dn1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 8DN1 # _exptl.entry_id 8DN1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 257.328 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E)-3-[7-(diethylamino)-2-oxo-2H-1-benzopyran-3-yl]prop-2-enal,bound form' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.926 _cell.angle_gamma 90 _cell.entry_id 8DN1 _cell.length_a 29.222 _cell.length_b 66.833 _cell.length_c 63.704 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DN1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H19 N O2' _chem_comp.formula_weight 257.328 _chem_comp.id RH6 _chem_comp.mon_nstd_flag . _chem_comp.name '(2E)-3-[7-(diethylamino)-2-oxo-2H-1-benzopyran-3-yl]prop-2-enal, bound form' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C15 RH6 sing 273 n n C15 C14 RH6 doub 274 e n C14 C13 RH6 sing 275 n n C19 C13 RH6 doub 276 n n C19 C20 RH6 sing 277 n n C13 C11 RH6 sing 278 n n O12 C11 RH6 doub 279 n n C20 C21 RH6 doub 280 n y C20 C09 RH6 sing 281 n y C21 C01 RH6 sing 282 n y C11 O10 RH6 sing 283 n n O10 C09 RH6 sing 284 n n C09 C08 RH6 doub 285 n y C01 C02 RH6 doub 286 n y C08 C02 RH6 sing 287 n y C02 N03 RH6 sing 288 n n N03 C04 RH6 sing 289 n n N03 C06 RH6 sing 290 n n C04 C05 RH6 sing 291 n n C07 C06 RH6 sing 292 n n C15 H1 RH6 sing 293 n n C21 H2 RH6 sing 294 n n C01 H3 RH6 sing 295 n n C04 H4 RH6 sing 296 n n C04 H5 RH6 sing 297 n n C05 H6 RH6 sing 298 n n C05 H7 RH6 sing 299 n n C05 H8 RH6 sing 300 n n C06 H9 RH6 sing 301 n n C06 H10 RH6 sing 302 n n C07 H11 RH6 sing 303 n n C07 H12 RH6 sing 304 n n C07 H13 RH6 sing 305 n n C08 H14 RH6 sing 306 n n C14 H15 RH6 sing 307 n n C16 H16 RH6 sing 308 n n C16 H17 RH6 sing 309 n n C16 H18 RH6 sing 310 n n C19 H19 RH6 sing 311 n n # _atom_sites.entry_id 8DN1 _atom_sites.fract_transf_matrix[1][1] 0.034221 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001151 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014963 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 301 GOL GOL . C 2 GOL A 1 302 501 GOL GOL . D 3 RH6 A 1 303 701 RH6 CM1 . E 4 HOH A 1 401 94 HOH HOH . E 4 HOH A 2 402 142 HOH HOH . E 4 HOH A 3 403 136 HOH HOH . E 4 HOH A 4 404 143 HOH HOH . E 4 HOH A 5 405 141 HOH HOH . E 4 HOH A 6 406 72 HOH HOH . E 4 HOH A 7 407 87 HOH HOH . E 4 HOH A 8 408 153 HOH HOH . E 4 HOH A 9 409 123 HOH HOH . E 4 HOH A 10 410 21 HOH HOH . E 4 HOH A 11 411 165 HOH HOH . E 4 HOH A 12 412 80 HOH HOH . E 4 HOH A 13 413 57 HOH HOH . E 4 HOH A 14 414 46 HOH HOH . E 4 HOH A 15 415 167 HOH HOH . E 4 HOH A 16 416 67 HOH HOH . E 4 HOH A 17 417 63 HOH HOH . E 4 HOH A 18 418 58 HOH HOH . E 4 HOH A 19 419 20 HOH HOH . E 4 HOH A 20 420 88 HOH HOH . E 4 HOH A 21 421 95 HOH HOH . E 4 HOH A 22 422 92 HOH HOH . E 4 HOH A 23 423 111 HOH HOH . E 4 HOH A 24 424 11 HOH HOH . E 4 HOH A 25 425 112 HOH HOH . E 4 HOH A 26 426 75 HOH HOH . E 4 HOH A 27 427 144 HOH HOH . E 4 HOH A 28 428 149 HOH HOH . E 4 HOH A 29 429 51 HOH HOH . E 4 HOH A 30 430 66 HOH HOH . E 4 HOH A 31 431 55 HOH HOH . E 4 HOH A 32 432 10 HOH HOH . E 4 HOH A 33 433 140 HOH HOH . E 4 HOH A 34 434 119 HOH HOH . E 4 HOH A 35 435 90 HOH HOH . E 4 HOH A 36 436 8 HOH HOH . E 4 HOH A 37 437 44 HOH HOH . E 4 HOH A 38 438 154 HOH HOH . E 4 HOH A 39 439 39 HOH HOH . E 4 HOH A 40 440 45 HOH HOH . E 4 HOH A 41 441 26 HOH HOH . E 4 HOH A 42 442 22 HOH HOH . E 4 HOH A 43 443 147 HOH HOH . E 4 HOH A 44 444 34 HOH HOH . E 4 HOH A 45 445 71 HOH HOH . E 4 HOH A 46 446 79 HOH HOH . E 4 HOH A 47 447 49 HOH HOH . E 4 HOH A 48 448 76 HOH HOH . E 4 HOH A 49 449 36 HOH HOH . E 4 HOH A 50 450 114 HOH HOH . E 4 HOH A 51 451 64 HOH HOH . E 4 HOH A 52 452 30 HOH HOH . E 4 HOH A 53 453 15 HOH HOH . E 4 HOH A 54 454 133 HOH HOH . E 4 HOH A 55 455 7 HOH HOH . E 4 HOH A 56 456 118 HOH HOH . E 4 HOH A 57 457 121 HOH HOH . E 4 HOH A 58 458 23 HOH HOH . E 4 HOH A 59 459 17 HOH HOH . E 4 HOH A 60 460 4 HOH HOH . E 4 HOH A 61 461 84 HOH HOH . E 4 HOH A 62 462 2 HOH HOH . E 4 HOH A 63 463 9 HOH HOH . E 4 HOH A 64 464 86 HOH HOH . E 4 HOH A 65 465 41 HOH HOH . E 4 HOH A 66 466 12 HOH HOH . E 4 HOH A 67 467 16 HOH HOH . E 4 HOH A 68 468 138 HOH HOH . E 4 HOH A 69 469 60 HOH HOH . E 4 HOH A 70 470 81 HOH HOH . E 4 HOH A 71 471 43 HOH HOH . E 4 HOH A 72 472 42 HOH HOH . E 4 HOH A 73 473 115 HOH HOH . E 4 HOH A 74 474 19 HOH HOH . E 4 HOH A 75 475 135 HOH HOH . E 4 HOH A 76 476 25 HOH HOH . E 4 HOH A 77 477 101 HOH HOH . E 4 HOH A 78 478 56 HOH HOH . E 4 HOH A 79 479 1 HOH HOH . E 4 HOH A 80 480 48 HOH HOH . E 4 HOH A 81 481 160 HOH HOH . E 4 HOH A 82 482 127 HOH HOH . E 4 HOH A 83 483 150 HOH HOH . E 4 HOH A 84 484 14 HOH HOH . E 4 HOH A 85 485 50 HOH HOH . E 4 HOH A 86 486 31 HOH HOH . E 4 HOH A 87 487 27 HOH HOH . E 4 HOH A 88 488 91 HOH HOH . E 4 HOH A 89 489 32 HOH HOH . E 4 HOH A 90 490 37 HOH HOH . E 4 HOH A 91 491 77 HOH HOH . E 4 HOH A 92 492 69 HOH HOH . E 4 HOH A 93 493 124 HOH HOH . E 4 HOH A 94 494 104 HOH HOH . E 4 HOH A 95 495 3 HOH HOH . E 4 HOH A 96 496 28 HOH HOH . E 4 HOH A 97 497 116 HOH HOH . E 4 HOH A 98 498 122 HOH HOH . E 4 HOH A 99 499 148 HOH HOH . E 4 HOH A 100 500 29 HOH HOH . E 4 HOH A 101 501 18 HOH HOH . E 4 HOH A 102 502 97 HOH HOH . E 4 HOH A 103 503 5 HOH HOH . E 4 HOH A 104 504 73 HOH HOH . E 4 HOH A 105 505 33 HOH HOH . E 4 HOH A 106 506 38 HOH HOH . E 4 HOH A 107 507 6 HOH HOH . E 4 HOH A 108 508 40 HOH HOH . E 4 HOH A 109 509 162 HOH HOH . E 4 HOH A 110 510 24 HOH HOH . E 4 HOH A 111 511 54 HOH HOH . E 4 HOH A 112 512 13 HOH HOH . E 4 HOH A 113 513 168 HOH HOH . E 4 HOH A 114 514 93 HOH HOH . E 4 HOH A 115 515 82 HOH HOH . E 4 HOH A 116 516 137 HOH HOH . E 4 HOH A 117 517 166 HOH HOH . E 4 HOH A 118 518 99 HOH HOH . E 4 HOH A 119 519 53 HOH HOH . E 4 HOH A 120 520 155 HOH HOH . E 4 HOH A 121 521 62 HOH HOH . E 4 HOH A 122 522 120 HOH HOH . E 4 HOH A 123 523 105 HOH HOH . E 4 HOH A 124 524 139 HOH HOH . E 4 HOH A 125 525 65 HOH HOH . E 4 HOH A 126 526 117 HOH HOH . E 4 HOH A 127 527 110 HOH HOH . E 4 HOH A 128 528 100 HOH HOH . E 4 HOH A 129 529 106 HOH HOH . E 4 HOH A 130 530 102 HOH HOH . E 4 HOH A 131 531 130 HOH HOH . E 4 HOH A 132 532 47 HOH HOH . E 4 HOH A 133 533 108 HOH HOH . E 4 HOH A 134 534 78 HOH HOH . E 4 HOH A 135 535 173 HOH HOH . E 4 HOH A 136 536 158 HOH HOH . E 4 HOH A 137 537 125 HOH HOH . E 4 HOH A 138 538 129 HOH HOH . E 4 HOH A 139 539 169 HOH HOH . E 4 HOH A 140 540 146 HOH HOH . E 4 HOH A 141 541 74 HOH HOH . E 4 HOH A 142 542 172 HOH HOH . E 4 HOH A 143 543 103 HOH HOH . E 4 HOH A 144 544 98 HOH HOH . E 4 HOH A 145 545 171 HOH HOH . E 4 HOH A 146 546 145 HOH HOH . E 4 HOH A 147 547 70 HOH HOH . E 4 HOH A 148 548 35 HOH HOH . E 4 HOH A 149 549 68 HOH HOH . E 4 HOH A 150 550 61 HOH HOH . E 4 HOH A 151 551 163 HOH HOH . E 4 HOH A 152 552 107 HOH HOH . E 4 HOH A 153 553 164 HOH HOH . E 4 HOH A 154 554 59 HOH HOH . E 4 HOH A 155 555 83 HOH HOH . E 4 HOH A 156 556 109 HOH HOH . E 4 HOH A 157 557 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 RH6 . . . D 3 10.942 -4.421 15.403 1 23.08 ? C13 RH6 303 A 1 HETATM 2 C C15 RH6 . . . D 3 12.367 -5.383 13.684 1 32.66 ? C15 RH6 303 A 1 HETATM 3 C C20 RH6 . . . D 3 10.393 -2.088 15.727 1 23.89 ? C20 RH6 303 A 1 HETATM 4 C C21 RH6 . . . D 3 10.204 -0.798 15.237 1 30.22 ? C21 RH6 303 A 1 HETATM 5 C C01 RH6 . . . D 3 9.797 0.235 16.087 1 29.83 ? C01 RH6 303 A 1 HETATM 6 C C02 RH6 . . . D 3 9.558 0.021 17.459 1 29.14 ? C02 RH6 303 A 1 HETATM 7 C C04 RH6 . . . D 3 8.896 2.485 17.791 1 39.36 ? C04 RH6 303 A 1 HETATM 8 C C05 RH6 . . . D 3 7.522 2.733 17.16 1 39.74 ? C05 RH6 303 A 1 HETATM 9 C C06 RH6 . . . D 3 8.734 0.888 19.709 1 39.46 ? C06 RH6 303 A 1 HETATM 10 C C07 RH6 . . . D 3 10.007 0.839 20.557 1 39.03 ? C07 RH6 303 A 1 HETATM 11 C C08 RH6 . . . D 3 9.755 -1.306 17.938 1 25.12 ? C08 RH6 303 A 1 HETATM 12 C C09 RH6 . . . D 3 10.165 -2.354 17.082 1 22.24 ? C09 RH6 303 A 1 HETATM 13 C C11 RH6 . . . D 3 10.693 -4.616 16.772 1 25.12 ? C11 RH6 303 A 1 HETATM 14 C C14 RH6 . . . D 3 11.156 -5.636 14.528 1 27.22 ? C14 RH6 303 A 1 HETATM 15 C C16 RH6 . . . D 3 13.539 -5.185 14.29 1 33.88 ? C16 RH6 303 A 1 HETATM 16 C C19 RH6 . . . D 3 10.796 -3.129 14.881 1 25.28 ? C19 RH6 303 A 1 HETATM 17 N N03 RH6 . . . D 3 9.133 1.131 18.313 1 37.73 ? N03 RH6 303 A 1 HETATM 18 O O10 RH6 . . . D 3 10.351 -3.6 17.543 1 23.71 ? O10 RH6 303 A 1 HETATM 19 O O12 RH6 . . . D 3 10.758 -5.756 17.228 1 24.08 ? O12 RH6 303 A 1 HETATM 20 H H1 RH6 . . . D 3 12.3 -5.365 12.757 1 39.22 ? H1 RH6 303 A 1 HETATM 21 H H2 RH6 . . . D 3 9.744 -0.791 14.43 1 36.29 ? H2 RH6 303 A 1 HETATM 22 H H3 RH6 . . . D 3 10.264 1.022 15.93 1 35.82 ? H3 RH6 303 A 1 HETATM 23 H H4 RH6 . . . D 3 9.001 3.09 18.5 1 47.26 ? H4 RH6 303 A 1 HETATM 24 H H5 RH6 . . . D 3 9.548 2.66 17.137 1 47.26 ? H5 RH6 303 A 1 HETATM 25 H H6 RH6 . . . D 3 7.163 3.533 17.498 1 47.71 ? H6 RH6 303 A 1 HETATM 26 H H7 RH6 . . . D 3 7.612 2.8 16.228 1 47.71 ? H7 RH6 303 A 1 HETATM 27 H H8 RH6 . . . D 3 6.948 2.02 17.369 1 47.71 ? H8 RH6 303 A 1 HETATM 28 H H9 RH6 . . . D 3 8.275 0.071 19.773 1 47.37 ? H9 RH6 303 A 1 HETATM 29 H H10 RH6 . . . D 3 8.175 1.58 20.008 1 47.37 ? H10 RH6 303 A 1 HETATM 30 H H11 RH6 . . . D 3 10.735 0.599 20.016 1 46.86 ? H11 RH6 303 A 1 HETATM 31 H H12 RH6 . . . D 3 10.163 1.684 20.937 1 46.86 ? H12 RH6 303 A 1 HETATM 32 H H13 RH6 . . . D 3 9.902 0.204 21.241 1 46.86 ? H13 RH6 303 A 1 HETATM 33 H H14 RH6 . . . D 3 9.612 -1.488 18.838 1 30.17 ? H14 RH6 303 A 1 HETATM 34 H H15 RH6 . . . D 3 11.311 -6.385 15.074 1 32.68 ? H15 RH6 303 A 1 HETATM 35 H H16 RH6 . . . D 3 13.573 -5.219 15.218 1 40.68 ? H16 RH6 303 A 1 HETATM 36 H H19 RH6 . . . D 3 10.966 -2.964 13.982 1 30.36 ? H19 RH6 303 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #