data_8DN3 # _model_server_result.job_id DOfiSB4GqlQyFmBp-YGguA _model_server_result.datetime_utc '2025-09-15 17:08:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dn3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KB","auth_seq_id":510}' # _entry.id 8DN3 # _exptl.entry_id 8DN3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 58.122 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-BUTANE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DN3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DN3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 K N N ? 7 O N N ? 7 LA N N ? 7 FB N N ? 7 KB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 138 D CYS 138 1_555 A SG CYS 152 D CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 198 D CYS 198 1_555 A SG CYS 209 D CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 138 A CYS 138 1_555 B SG CYS 152 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 198 A CYS 198 1_555 B SG CYS 209 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 C SG CYS 138 B CYS 138 1_555 C SG CYS 152 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 C SG CYS 198 B CYS 198 1_555 C SG CYS 209 B CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 D SG CYS 138 C CYS 138 1_555 D SG CYS 152 C CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 D SG CYS 198 C CYS 198 1_555 D SG CYS 209 C CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 E SG CYS 159 E CYS 161 1_555 E SG CYS 173 E CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 38 D ASN 38 1_555 F C1 NAG . D NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 D ND2 ASN 38 C ASN 38 1_555 QA C1 NAG . C NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale3 E ND2 ASN 218 E ASN 220 1_555 EB C1 NAG . E NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C4 H10' _chem_comp.formula_weight 58.122 _chem_comp.id NBU _chem_comp.mon_nstd_flag . _chem_comp.name N-BUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NBU sing 365 n n C1 H11 NBU sing 366 n n C1 H12 NBU sing 367 n n C1 H13 NBU sing 368 n n C2 C3 NBU sing 369 n n C2 H21 NBU sing 370 n n C2 H22 NBU sing 371 n n C3 C4 NBU sing 372 n n C3 H31 NBU sing 373 n n C3 H32 NBU sing 374 n n C4 H41 NBU sing 375 n n C4 H42 NBU sing 376 n n C4 H43 NBU sing 377 n n # _atom_sites.entry_id 8DN3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 NAG D 1 501 501 NAG NAG . G 4 HEX D 1 502 502 HEX HEX . H 5 UND D 1 503 503 UND UND . I 5 UND D 1 504 504 UND UND . J 6 DD9 D 1 505 505 DD9 DD9 . K 7 NBU D 1 506 506 NBU NBU . L 4 HEX D 1 507 507 HEX HEX . M 8 HP6 D 1 508 508 HP6 HP6 . N 8 HP6 D 1 509 511 HP6 HP6 . O 7 NBU D 1 510 512 NBU NBU . P 5 UND D 1 511 513 UND UND . Q 5 UND D 1 512 514 UND UND . R 4 HEX D 1 513 502 HEX HEX . S 3 NAG A 1 501 501 NAG NAG . T 5 UND A 1 502 502 UND UND . U 5 UND A 1 503 503 UND UND . V 8 HP6 A 1 504 504 HP6 HP6 . W 8 HP6 A 1 505 505 HP6 HP6 . X 4 HEX A 1 506 506 HEX HEX . Y 4 HEX A 1 507 507 HEX HEX . Z 6 DD9 A 1 508 508 DD9 DD9 . AA 5 UND A 1 509 509 UND UND . BA 4 HEX A 1 510 510 HEX HEX . CA 6 DD9 A 1 511 509 DD9 DD9 . DA 4 HEX A 1 512 510 HEX HEX . EA 3 NAG B 1 501 501 NAG NAG . FA 4 HEX B 1 502 502 HEX HEX . GA 4 HEX B 1 503 503 HEX HEX . HA 6 DD9 B 1 504 504 DD9 DD9 . IA 6 DD9 B 1 505 505 DD9 DD9 . JA 4 HEX B 1 506 506 HEX HEX . KA 6 DD9 B 1 507 507 DD9 DD9 . LA 7 NBU B 1 508 508 NBU NBU . MA 6 DD9 B 1 509 509 DD9 DD9 . NA 6 DD9 B 1 510 511 DD9 DD9 . OA 6 DD9 C 1 501 510 DD9 DD9 . PA 8 HP6 C 1 502 511 HP6 HP6 . QA 3 NAG C 1 503 501 NAG NAG . RA 4 HEX C 1 504 503 HEX HEX . SA 5 UND C 1 505 504 UND UND . TA 4 HEX C 1 506 505 HEX HEX . UA 9 D10 C 1 507 506 D10 D10 . VA 4 HEX C 1 508 507 HEX HEX . WA 5 UND C 1 509 508 UND UND . XA 5 UND C 1 510 509 UND UND . YA 8 HP6 C 1 511 510 HP6 HP6 . ZA 6 DD9 C 1 512 512 DD9 DD9 . AB 6 DD9 C 1 513 513 DD9 DD9 . BB 8 HP6 E 1 501 509 HP6 HP6 . CB 4 HEX E 1 502 510 HEX HEX . DB 8 HP6 E 1 503 515 HP6 HP6 . EB 3 NAG E 1 504 501 NAG NAG . FB 7 NBU E 1 505 502 NBU NBU . GB 5 UND E 1 506 503 UND UND . HB 6 DD9 E 1 507 504 DD9 DD9 . IB 6 DD9 E 1 508 505 DD9 DD9 . JB 4 HEX E 1 509 506 HEX HEX . KB 7 NBU E 1 510 507 NBU NBU . LB 5 UND E 1 511 508 UND UND . MB 10 CL E 1 512 1 CL CL . NB 10 CL E 1 513 2 CL CL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NBU . . . KB 7 88.621 120.441 112.337 1 20 ? C1 NBU 510 E 1 HETATM 2 C C2 NBU . . . KB 7 89.803 119.904 113.108 1 20 ? C2 NBU 510 E 1 HETATM 3 C C3 NBU . . . KB 7 89.478 119.5 114.521 1 20 ? C3 NBU 510 E 1 HETATM 4 C C4 NBU . . . KB 7 89.179 120.64 115.473 1 20 ? C4 NBU 510 E 1 HETATM 5 H H11 NBU . . . KB 7 88.901 120.676 111.435 1 20 ? H11 NBU 510 E 1 HETATM 6 H H12 NBU . . . KB 7 88.272 121.231 112.783 1 20 ? H12 NBU 510 E 1 HETATM 7 H H13 NBU . . . KB 7 87.926 119.762 112.292 1 20 ? H13 NBU 510 E 1 HETATM 8 H H21 NBU . . . KB 7 90.505 120.59 113.132 1 20 ? H21 NBU 510 E 1 HETATM 9 H H22 NBU . . . KB 7 90.164 119.123 112.635 1 20 ? H22 NBU 510 E 1 HETATM 10 H H31 NBU . . . KB 7 90.237 118.987 114.873 1 20 ? H31 NBU 510 E 1 HETATM 11 H H32 NBU . . . KB 7 88.7 118.901 114.495 1 20 ? H32 NBU 510 E 1 HETATM 12 H H41 NBU . . . KB 7 88.275 120.544 115.822 1 20 ? H41 NBU 510 E 1 HETATM 13 H H42 NBU . . . KB 7 89.255 121.491 115.008 1 20 ? H42 NBU 510 E 1 HETATM 14 H H43 NBU . . . KB 7 89.812 120.62 116.213 1 20 ? H43 NBU 510 E 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #