data_8DN3
#
_model_server_result.job_id            2QTRTXSJwOqVjT1picbJUg 
_model_server_result.datetime_utc      '2025-09-14 20:35:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dn3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"MB","auth_seq_id":512}' 
#
_entry.id    8DN3 
#
_exptl.entry_id    8DN3 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              35.453 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHLORIDE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DN3 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DN3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 MB N N 
? 10 NB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 138 D CYS 138 1_555 A SG CYS 152 D CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 198 D CYS 198 1_555 A SG CYS 209 D CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 B SG CYS 138 A CYS 138 1_555 B SG CYS 152 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 198 A CYS 198 1_555 B SG CYS 209 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 C SG CYS 138 B CYS 138 1_555 C SG CYS 152 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 C SG CYS 198 B CYS 198 1_555 C SG CYS 209 B CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 D SG CYS 138 C CYS 138 1_555 D SG CYS 152 C CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 D SG CYS 198 C CYS 198 1_555 D SG CYS 209 C CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf9 E SG CYS 159 E CYS 161 1_555 E SG CYS 173 E CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 38 D ASN 38 1_555 F C1 NAG . D NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale2 D ND2 ASN 38 C ASN 38 1_555 QA C1 NAG . C NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? 
covale ? covale3 E ND2 ASN 218 E ASN 220 1_555 EB C1 NAG . E NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
#
_chem_comp.formula           'Cl -1' 
_chem_comp.formula_weight    35.453 
_chem_comp.id                CL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHLORIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8DN3 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 3 NAG D 1 501 501 NAG NAG . 
G 4 HEX D 1 502 502 HEX HEX . 
H 5 UND D 1 503 503 UND UND . 
I 5 UND D 1 504 504 UND UND . 
J 6 DD9 D 1 505 505 DD9 DD9 . 
K 7 NBU D 1 506 506 NBU NBU . 
L 4 HEX D 1 507 507 HEX HEX . 
M 8 HP6 D 1 508 508 HP6 HP6 . 
N 8 HP6 D 1 509 511 HP6 HP6 . 
O 7 NBU D 1 510 512 NBU NBU . 
P 5 UND D 1 511 513 UND UND . 
Q 5 UND D 1 512 514 UND UND . 
R 4 HEX D 1 513 502 HEX HEX . 
S 3 NAG A 1 501 501 NAG NAG . 
T 5 UND A 1 502 502 UND UND . 
U 5 UND A 1 503 503 UND UND . 
V 8 HP6 A 1 504 504 HP6 HP6 . 
W 8 HP6 A 1 505 505 HP6 HP6 . 
X 4 HEX A 1 506 506 HEX HEX . 
Y 4 HEX A 1 507 507 HEX HEX . 
Z 6 DD9 A 1 508 508 DD9 DD9 . 
AA 5 UND A 1 509 509 UND UND . 
BA 4 HEX A 1 510 510 HEX HEX . 
CA 6 DD9 A 1 511 509 DD9 DD9 . 
DA 4 HEX A 1 512 510 HEX HEX . 
EA 3 NAG B 1 501 501 NAG NAG . 
FA 4 HEX B 1 502 502 HEX HEX . 
GA 4 HEX B 1 503 503 HEX HEX . 
HA 6 DD9 B 1 504 504 DD9 DD9 . 
IA 6 DD9 B 1 505 505 DD9 DD9 . 
JA 4 HEX B 1 506 506 HEX HEX . 
KA 6 DD9 B 1 507 507 DD9 DD9 . 
LA 7 NBU B 1 508 508 NBU NBU . 
MA 6 DD9 B 1 509 509 DD9 DD9 . 
NA 6 DD9 B 1 510 511 DD9 DD9 . 
OA 6 DD9 C 1 501 510 DD9 DD9 . 
PA 8 HP6 C 1 502 511 HP6 HP6 . 
QA 3 NAG C 1 503 501 NAG NAG . 
RA 4 HEX C 1 504 503 HEX HEX . 
SA 5 UND C 1 505 504 UND UND . 
TA 4 HEX C 1 506 505 HEX HEX . 
UA 9 D10 C 1 507 506 D10 D10 . 
VA 4 HEX C 1 508 507 HEX HEX . 
WA 5 UND C 1 509 508 UND UND . 
XA 5 UND C 1 510 509 UND UND . 
YA 8 HP6 C 1 511 510 HP6 HP6 . 
ZA 6 DD9 C 1 512 512 DD9 DD9 . 
AB 6 DD9 C 1 513 513 DD9 DD9 . 
BB 8 HP6 E 1 501 509 HP6 HP6 . 
CB 4 HEX E 1 502 510 HEX HEX . 
DB 8 HP6 E 1 503 515 HP6 HP6 . 
EB 3 NAG E 1 504 501 NAG NAG . 
FB 7 NBU E 1 505 502 NBU NBU . 
GB 5 UND E 1 506 503 UND UND . 
HB 6 DD9 E 1 507 504 DD9 DD9 . 
IB 6 DD9 E 1 508 505 DD9 DD9 . 
JB 4 HEX E 1 509 506 HEX HEX . 
KB 7 NBU E 1 510 507 NBU NBU . 
LB 5 UND E 1 511 508 UND UND . 
MB 10 CL E 1 512 1 CL CL . 
NB 10 CL E 1 513 2 CL CL . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CL 
_atom_site.label_atom_id         CL 
_atom_site.label_comp_id         CL 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         MB 
_atom_site.label_entity_id       10 
_atom_site.Cartn_x               111.524 
_atom_site.Cartn_y               134.168 
_atom_site.Cartn_z               138.373 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        104.95 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CL 
_atom_site.auth_comp_id          CL 
_atom_site.auth_seq_id           512 
_atom_site.auth_asym_id          E 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#