data_8DN8 # _model_server_result.job_id cfHQ0vjd2pox9Os70jQlWQ _model_server_result.datetime_utc '2025-07-03 01:14:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dn8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 8DN8 # _exptl.entry_id 8DN8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 194.182 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-O-methyl-alpha-D-mannopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DN8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DN8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C7 H14 O6' _chem_comp.formula_weight 194.182 _chem_comp.id U90 _chem_comp.mon_nstd_flag . _chem_comp.name 3-O-methyl-alpha-D-mannopyranose _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6' C6' U90 sing 356 n n O4' C4' U90 sing 357 n n C6' C5' U90 sing 358 n n C5' C4' U90 sing 359 n n C5' O5' U90 sing 360 n n C4' C3' U90 sing 361 n n C3' O3' U90 sing 362 n n C3' C2' U90 sing 363 n n O5' C1' U90 sing 364 n n O3' C7' U90 sing 365 n n O1' C1' U90 sing 366 n n C1' C2' U90 sing 367 n n C2' O2' U90 sing 368 n n C1' H1 U90 sing 369 n n C2' H2 U90 sing 370 n n C3' H3 U90 sing 371 n n C4' H4 U90 sing 372 n n C5' H5 U90 sing 373 n n C6' H6 U90 sing 374 n n C6' H7 U90 sing 375 n n C7' H8 U90 sing 376 n n C7' H9 U90 sing 377 n n C7' H10 U90 sing 378 n n O1' H11 U90 sing 379 n n O2' H12 U90 sing 380 n n O4' H13 U90 sing 381 n n O6' H14 U90 sing 382 n n # _atom_sites.entry_id 8DN8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 U90 A 1 501 1 U90 LIG . F 3 U90 C 1 501 2 U90 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' U90 . . . E 3 156.078 143.365 96.638 1 173.9 ? C1' U90 501 A 1 HETATM 2 C C2' U90 . . . E 3 156.632 143.877 95.357 1 173.9 ? C2' U90 501 A 1 HETATM 3 C C3' U90 . . . E 3 155.582 144.257 94.43 1 173.9 ? C3' U90 501 A 1 HETATM 4 C C4' U90 . . . E 3 154.658 143.138 94.147 1 173.9 ? C4' U90 501 A 1 HETATM 5 C C5' U90 . . . E 3 154.04 142.528 95.436 1 173.9 ? C5' U90 501 A 1 HETATM 6 C C6' U90 . . . E 3 153.385 141.323 95.1 1 173.9 ? C6' U90 501 A 1 HETATM 7 C C7' U90 . . . E 3 157.051 145.784 93.262 1 173.9 ? C7' U90 501 A 1 HETATM 8 O O1' U90 . . . E 3 155.369 144.392 97.264 1 173.9 ? O1' U90 501 A 1 HETATM 9 O O2' U90 . . . E 3 157.427 142.802 94.731 1 173.9 ? O2' U90 501 A 1 HETATM 10 O O3' U90 . . . E 3 156.18 144.696 93.148 1 173.9 ? O3' U90 501 A 1 HETATM 11 O O4' U90 . . . E 3 153.602 143.618 93.315 1 173.9 ? O4' U90 501 A 1 HETATM 12 O O5' U90 . . . E 3 155.172 142.226 96.425 1 173.9 ? O5' U90 501 A 1 HETATM 13 O O6' U90 . . . E 3 153.861 140.323 95.956 1 173.9 ? O6' U90 501 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 630 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #