data_8DNJ # _model_server_result.job_id VwNntMAU02wqn1bcOKKn7w _model_server_result.datetime_utc '2024-11-25 23:50:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dnj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 8DNJ # _exptl.entry_id 8DNJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.8 _cell.angle_gamma 90 _cell.entry_id 8DNJ _cell.length_a 37.594 _cell.length_b 112.162 _cell.length_c 57.821 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DNJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,M 1 1 B,G,H,I,N 2 1 C,J,K,L,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 G N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 27 A CYS 12 1_555 F C22 U4U . A U4U 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? covale ? covale2 B SG CYS 27 B CYS 12 1_555 I C22 U4U . B U4U 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? covale ? covale3 C SG CYS 27 C CYS 12 1_555 L C22 U4U . C U4U 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? metalc ? metalc1 A OG SER 32 A SER 17 1_555 D MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc2 D MG MG . A MG 301 1_555 E O2B GDP . A GDP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc3 D MG MG . A MG 301 1_555 M O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc4 D MG MG . A MG 301 1_555 M O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc5 D MG MG . A MG 301 1_555 M O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc6 D MG MG . A MG 301 1_555 M O HOH . A HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc7 B OG SER 32 B SER 17 1_555 G MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc8 G MG MG . B MG 301 1_555 H O2B GDP . B GDP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc9 G MG MG . B MG 301 1_555 N O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc10 G MG MG . B MG 301 1_555 N O HOH . B HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc11 G MG MG . B MG 301 1_555 N O HOH . B HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc12 G MG MG . B MG 301 1_555 N O HOH . B HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc13 C OG SER 32 C SER 17 1_555 J MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc14 J MG MG . C MG 301 1_555 K O2B GDP . C GDP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc15 J MG MG . C MG 301 1_555 O O HOH . C HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc16 J MG MG . C MG 301 1_555 O O HOH . C HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc17 J MG MG . C MG 301 1_555 O O HOH . C HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc18 J MG MG . C MG 301 1_555 O O HOH . C HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8DNJ _atom_sites.fract_transf_matrix[1][1] 0.0266 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003174 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MG A 1 301 301 MG MG . E 3 GDP A 1 302 501 GDP GDP . F 4 U4U A 1 303 701 U4U UNL . G 2 MG B 1 301 301 MG MG . H 3 GDP B 1 302 501 GDP GDP . I 4 U4U B 1 303 701 U4U UNL . J 2 MG C 1 301 301 MG MG . K 3 GDP C 1 302 501 GDP GDP . L 4 U4U C 1 303 701 U4U UNL . M 5 HOH A 1 401 401 HOH HOH . M 5 HOH A 2 402 174 HOH HOH . M 5 HOH A 3 403 66 HOH HOH . M 5 HOH A 4 404 156 HOH HOH . M 5 HOH A 5 405 403 HOH HOH . M 5 HOH A 6 406 175 HOH HOH . M 5 HOH A 7 407 35 HOH HOH . M 5 HOH A 8 408 3 HOH HOH . M 5 HOH A 9 409 172 HOH HOH . M 5 HOH A 10 410 54 HOH HOH . M 5 HOH A 11 411 51 HOH HOH . M 5 HOH A 12 412 24 HOH HOH . M 5 HOH A 13 413 113 HOH HOH . M 5 HOH A 14 414 404 HOH HOH . M 5 HOH A 15 415 143 HOH HOH . M 5 HOH A 16 416 14 HOH HOH . M 5 HOH A 17 417 11 HOH HOH . M 5 HOH A 18 418 79 HOH HOH . M 5 HOH A 19 419 37 HOH HOH . M 5 HOH A 20 420 26 HOH HOH . M 5 HOH A 21 421 159 HOH HOH . M 5 HOH A 22 422 137 HOH HOH . M 5 HOH A 23 423 63 HOH HOH . M 5 HOH A 24 424 168 HOH HOH . M 5 HOH A 25 425 98 HOH HOH . M 5 HOH A 26 426 40 HOH HOH . M 5 HOH A 27 427 81 HOH HOH . M 5 HOH A 28 428 97 HOH HOH . M 5 HOH A 29 429 27 HOH HOH . M 5 HOH A 30 430 105 HOH HOH . M 5 HOH A 31 431 402 HOH HOH . M 5 HOH A 32 432 115 HOH HOH . M 5 HOH A 33 433 92 HOH HOH . M 5 HOH A 34 434 57 HOH HOH . M 5 HOH A 35 435 39 HOH HOH . M 5 HOH A 36 436 45 HOH HOH . M 5 HOH A 37 437 93 HOH HOH . M 5 HOH A 38 438 154 HOH HOH . M 5 HOH A 39 439 158 HOH HOH . M 5 HOH A 40 440 43 HOH HOH . M 5 HOH A 41 441 153 HOH HOH . M 5 HOH A 42 442 44 HOH HOH . M 5 HOH A 43 443 176 HOH HOH . M 5 HOH A 44 444 157 HOH HOH . M 5 HOH A 45 445 56 HOH HOH . M 5 HOH A 46 446 160 HOH HOH . M 5 HOH A 47 447 59 HOH HOH . M 5 HOH A 48 448 171 HOH HOH . M 5 HOH A 49 449 139 HOH HOH . M 5 HOH A 50 450 117 HOH HOH . M 5 HOH A 51 451 126 HOH HOH . M 5 HOH A 52 452 13 HOH HOH . M 5 HOH A 53 453 16 HOH HOH . M 5 HOH A 54 454 52 HOH HOH . M 5 HOH A 55 455 135 HOH HOH . M 5 HOH A 56 456 186 HOH HOH . M 5 HOH A 57 457 5 HOH HOH . M 5 HOH A 58 458 155 HOH HOH . M 5 HOH A 59 459 104 HOH HOH . M 5 HOH A 60 460 178 HOH HOH . M 5 HOH A 61 461 167 HOH HOH . M 5 HOH A 62 462 34 HOH HOH . M 5 HOH A 63 463 94 HOH HOH . M 5 HOH A 64 464 173 HOH HOH . M 5 HOH A 65 465 165 HOH HOH . M 5 HOH A 66 466 73 HOH HOH . M 5 HOH A 67 467 166 HOH HOH . M 5 HOH A 68 468 185 HOH HOH . M 5 HOH A 69 469 123 HOH HOH . M 5 HOH A 70 470 146 HOH HOH . N 5 HOH B 1 401 403 HOH HOH . N 5 HOH B 2 402 114 HOH HOH . N 5 HOH B 3 403 122 HOH HOH . N 5 HOH B 4 404 116 HOH HOH . N 5 HOH B 5 405 162 HOH HOH . N 5 HOH B 6 406 36 HOH HOH . N 5 HOH B 7 407 179 HOH HOH . N 5 HOH B 8 408 17 HOH HOH . N 5 HOH B 9 409 96 HOH HOH . N 5 HOH B 10 410 119 HOH HOH . N 5 HOH B 11 411 83 HOH HOH . N 5 HOH B 12 412 152 HOH HOH . N 5 HOH B 13 413 401 HOH HOH . N 5 HOH B 14 414 133 HOH HOH . N 5 HOH B 15 415 55 HOH HOH . N 5 HOH B 16 416 19 HOH HOH . N 5 HOH B 17 417 404 HOH HOH . N 5 HOH B 18 418 85 HOH HOH . N 5 HOH B 19 419 101 HOH HOH . N 5 HOH B 20 420 74 HOH HOH . N 5 HOH B 21 421 30 HOH HOH . N 5 HOH B 22 422 91 HOH HOH . N 5 HOH B 23 423 1 HOH HOH . N 5 HOH B 24 424 60 HOH HOH . N 5 HOH B 25 425 402 HOH HOH . N 5 HOH B 26 426 128 HOH HOH . N 5 HOH B 27 427 18 HOH HOH . N 5 HOH B 28 428 50 HOH HOH . N 5 HOH B 29 429 68 HOH HOH . N 5 HOH B 30 430 65 HOH HOH . N 5 HOH B 31 431 149 HOH HOH . N 5 HOH B 32 432 20 HOH HOH . N 5 HOH B 33 433 53 HOH HOH . N 5 HOH B 34 434 31 HOH HOH . N 5 HOH B 35 435 10 HOH HOH . N 5 HOH B 36 436 100 HOH HOH . N 5 HOH B 37 437 75 HOH HOH . N 5 HOH B 38 438 161 HOH HOH . N 5 HOH B 39 439 2 HOH HOH . N 5 HOH B 40 440 87 HOH HOH . N 5 HOH B 41 441 89 HOH HOH . N 5 HOH B 42 442 22 HOH HOH . N 5 HOH B 43 443 69 HOH HOH . N 5 HOH B 44 444 49 HOH HOH . N 5 HOH B 45 445 42 HOH HOH . N 5 HOH B 46 446 110 HOH HOH . N 5 HOH B 47 447 58 HOH HOH . N 5 HOH B 48 448 90 HOH HOH . N 5 HOH B 49 449 71 HOH HOH . N 5 HOH B 50 450 47 HOH HOH . N 5 HOH B 51 451 12 HOH HOH . N 5 HOH B 52 452 77 HOH HOH . N 5 HOH B 53 453 25 HOH HOH . N 5 HOH B 54 454 127 HOH HOH . N 5 HOH B 55 455 8 HOH HOH . N 5 HOH B 56 456 99 HOH HOH . N 5 HOH B 57 457 129 HOH HOH . N 5 HOH B 58 458 28 HOH HOH . N 5 HOH B 59 459 144 HOH HOH . N 5 HOH B 60 460 86 HOH HOH . N 5 HOH B 61 461 138 HOH HOH . N 5 HOH B 62 462 70 HOH HOH . N 5 HOH B 63 463 108 HOH HOH . N 5 HOH B 64 464 180 HOH HOH . N 5 HOH B 65 465 23 HOH HOH . N 5 HOH B 66 466 48 HOH HOH . N 5 HOH B 67 467 145 HOH HOH . N 5 HOH B 68 468 150 HOH HOH . N 5 HOH B 69 469 170 HOH HOH . N 5 HOH B 70 470 130 HOH HOH . N 5 HOH B 71 471 82 HOH HOH . N 5 HOH B 72 472 32 HOH HOH . N 5 HOH B 73 473 151 HOH HOH . N 5 HOH B 74 474 103 HOH HOH . O 5 HOH C 1 401 183 HOH HOH . O 5 HOH C 2 402 403 HOH HOH . O 5 HOH C 3 403 46 HOH HOH . O 5 HOH C 4 404 4 HOH HOH . O 5 HOH C 5 405 124 HOH HOH . O 5 HOH C 6 406 107 HOH HOH . O 5 HOH C 7 407 401 HOH HOH . O 5 HOH C 8 408 76 HOH HOH . O 5 HOH C 9 409 9 HOH HOH . O 5 HOH C 10 410 7 HOH HOH . O 5 HOH C 11 411 78 HOH HOH . O 5 HOH C 12 412 125 HOH HOH . O 5 HOH C 13 413 72 HOH HOH . O 5 HOH C 14 414 402 HOH HOH . O 5 HOH C 15 415 181 HOH HOH . O 5 HOH C 16 416 118 HOH HOH . O 5 HOH C 17 417 106 HOH HOH . O 5 HOH C 18 418 38 HOH HOH . O 5 HOH C 19 419 187 HOH HOH . O 5 HOH C 20 420 29 HOH HOH . O 5 HOH C 21 421 134 HOH HOH . O 5 HOH C 22 422 21 HOH HOH . O 5 HOH C 23 423 88 HOH HOH . O 5 HOH C 24 424 62 HOH HOH . O 5 HOH C 25 425 109 HOH HOH . O 5 HOH C 26 426 61 HOH HOH . O 5 HOH C 27 427 404 HOH HOH . O 5 HOH C 28 428 6 HOH HOH . O 5 HOH C 29 429 33 HOH HOH . O 5 HOH C 30 430 140 HOH HOH . O 5 HOH C 31 431 84 HOH HOH . O 5 HOH C 32 432 131 HOH HOH . O 5 HOH C 33 433 95 HOH HOH . O 5 HOH C 34 434 64 HOH HOH . O 5 HOH C 35 435 111 HOH HOH . O 5 HOH C 36 436 142 HOH HOH . O 5 HOH C 37 437 41 HOH HOH . O 5 HOH C 38 438 148 HOH HOH . O 5 HOH C 39 439 15 HOH HOH . O 5 HOH C 40 440 164 HOH HOH . O 5 HOH C 41 441 80 HOH HOH . O 5 HOH C 42 442 112 HOH HOH . O 5 HOH C 43 443 136 HOH HOH . O 5 HOH C 44 444 121 HOH HOH . O 5 HOH C 45 445 177 HOH HOH . O 5 HOH C 46 446 184 HOH HOH . O 5 HOH C 47 447 147 HOH HOH . O 5 HOH C 48 448 182 HOH HOH . O 5 HOH C 49 449 169 HOH HOH . O 5 HOH C 50 450 132 HOH HOH . O 5 HOH C 51 451 120 HOH HOH . O 5 HOH C 52 452 102 HOH HOH . O 5 HOH C 53 453 141 HOH HOH . O 5 HOH C 54 454 163 HOH HOH . O 5 HOH C 55 455 67 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 2.883 _atom_site.Cartn_y 0.597 _atom_site.Cartn_z -0.968 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 13.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 1038 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 1 #