data_8DNK # _model_server_result.job_id rrvhn8Vt-RYOQaYq2Z3VFg _model_server_result.datetime_utc '2025-08-31 06:28:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dnk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 8DNK # _exptl.entry_id 8DNK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.428 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{[(5-tert-butyl-6-chloro-1H-indazol-3-yl)amino]methyl}-4-chloro-1-methyl-N-(1-propanoylazetidin-3-yl)-1H-imidazole-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DNK _cell.length_a 91.181 _cell.length_b 91.181 _cell.length_c 91.181 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DNK _symmetry.cell_setting ? _symmetry.Int_Tables_number 195 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 27 A CYS 12 1_555 D C23 U50 . A U50 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? metalc ? metalc1 A OG SER 32 A SER 17 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc2 B MG MG . A MG 301 1_555 C O2B GDP . A GDP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc3 B MG MG . A MG 301 1_555 F O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc4 B MG MG . A MG 301 1_555 F O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc5 B MG MG . A MG 301 1_555 F O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc6 B MG MG . A MG 301 1_555 F O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? # _chem_comp.formula 'C23 H29 Cl2 N7 O2' _chem_comp.formula_weight 506.428 _chem_comp.id U50 _chem_comp.mon_nstd_flag . _chem_comp.name 2-{[(5-tert-butyl-6-chloro-1H-indazol-3-yl)amino]methyl}-4-chloro-1-methyl-N-(1-propanoylazetidin-3-yl)-1H-imidazole-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C22 U50 sing 379 n n C22 C21 U50 sing 380 n n O2 C21 U50 doub 381 n n C21 N7 U50 sing 382 n n N7 C19 U50 sing 383 n n N7 C20 U50 sing 384 n n C19 C18 U50 sing 385 n n C20 C18 U50 sing 386 n n C18 N6 U50 sing 387 n n CL2 C15 U50 sing 388 n n N6 C17 U50 sing 389 n n C15 N5 U50 sing 390 n y C15 C14 U50 doub 391 n y C17 C14 U50 sing 392 n n C17 O1 U50 doub 393 n n N5 C13 U50 doub 394 n y C14 N4 U50 sing 395 n y N4 C13 U50 sing 396 n y N4 C16 U50 sing 397 n n C13 C12 U50 sing 398 n n C12 N3 U50 sing 399 n n N3 C7 U50 sing 400 n n C7 N1 U50 doub 401 n y C7 C6 U50 sing 402 n y C9 C8 U50 sing 403 n n C5 C6 U50 doub 404 n y C5 C4 U50 sing 405 n y N1 N2 U50 sing 406 n y C6 C1 U50 sing 407 n y C8 C10 U50 sing 408 n n C8 C4 U50 sing 409 n n C8 C11 U50 sing 410 n n C4 C3 U50 doub 411 n y N2 C1 U50 sing 412 n y C1 C2 U50 doub 413 n y C3 C2 U50 sing 414 n y C3 CL1 U50 sing 415 n n C23 H1 U50 sing 416 n n C23 H2 U50 sing 417 n n C23 H3 U50 sing 418 n n C22 H4 U50 sing 419 n n C22 H5 U50 sing 420 n n C20 H6 U50 sing 421 n n C20 H7 U50 sing 422 n n C19 H8 U50 sing 423 n n C19 H9 U50 sing 424 n n C18 H10 U50 sing 425 n n N6 H11 U50 sing 426 n n C16 H12 U50 sing 427 n n C16 H13 U50 sing 428 n n C16 H14 U50 sing 429 n n C12 H15 U50 sing 430 n n C12 H16 U50 sing 431 n n N3 H17 U50 sing 432 n n C5 H18 U50 sing 433 n n C10 H19 U50 sing 434 n n C10 H20 U50 sing 435 n n C10 H21 U50 sing 436 n n C11 H22 U50 sing 437 n n C11 H23 U50 sing 438 n n C11 H24 U50 sing 439 n n C9 H25 U50 sing 440 n n C9 H26 U50 sing 441 n n C9 H27 U50 sing 442 n n C2 H28 U50 sing 443 n n N2 H29 U50 sing 444 n n # _atom_sites.entry_id 8DNK _atom_sites.fract_transf_matrix[1][1] 0.010967 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010967 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 301 MG MG . C 3 GDP A 1 302 501 GDP GDP . D 4 U50 A 1 303 701 U50 UNL . E 5 SO4 A 1 304 1 SO4 SO4 . F 6 HOH A 1 401 403 HOH HOH . F 6 HOH A 2 402 3 HOH HOH . F 6 HOH A 3 403 37 HOH HOH . F 6 HOH A 4 404 11 HOH HOH . F 6 HOH A 5 405 401 HOH HOH . F 6 HOH A 6 406 404 HOH HOH . F 6 HOH A 7 407 402 HOH HOH . F 6 HOH A 8 408 15 HOH HOH . F 6 HOH A 9 409 20 HOH HOH . F 6 HOH A 10 410 6 HOH HOH . F 6 HOH A 11 411 12 HOH HOH . F 6 HOH A 12 412 25 HOH HOH . F 6 HOH A 13 413 13 HOH HOH . F 6 HOH A 14 414 22 HOH HOH . F 6 HOH A 15 415 16 HOH HOH . F 6 HOH A 16 416 10 HOH HOH . F 6 HOH A 17 417 8 HOH HOH . F 6 HOH A 18 418 19 HOH HOH . F 6 HOH A 19 419 17 HOH HOH . F 6 HOH A 20 420 18 HOH HOH . F 6 HOH A 21 421 27 HOH HOH . F 6 HOH A 22 422 7 HOH HOH . F 6 HOH A 23 423 9 HOH HOH . F 6 HOH A 24 424 21 HOH HOH . F 6 HOH A 25 425 1 HOH HOH . F 6 HOH A 26 426 32 HOH HOH . F 6 HOH A 27 427 28 HOH HOH . F 6 HOH A 28 428 5 HOH HOH . F 6 HOH A 29 429 36 HOH HOH . F 6 HOH A 30 430 14 HOH HOH . F 6 HOH A 31 431 30 HOH HOH . F 6 HOH A 32 432 33 HOH HOH . F 6 HOH A 33 433 4 HOH HOH . F 6 HOH A 34 434 38 HOH HOH . F 6 HOH A 35 435 2 HOH HOH . F 6 HOH A 36 436 23 HOH HOH . F 6 HOH A 37 437 35 HOH HOH . F 6 HOH A 38 438 26 HOH HOH . F 6 HOH A 39 439 31 HOH HOH . F 6 HOH A 40 440 29 HOH HOH . F 6 HOH A 41 441 34 HOH HOH . F 6 HOH A 42 442 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C23 U50 . . . D 4 25.786 42.709 -36.834 1 50.73 ? C23 U50 303 A 1 HETATM 2 C C22 U50 . . . D 4 26.455 43.22 -35.562 1 45.75 ? C22 U50 303 A 1 HETATM 3 C C21 U50 . . . D 4 25.547 43.616 -34.386 1 49.74 ? C21 U50 303 A 1 HETATM 4 O O2 U50 . . . D 4 24.337 43.746 -34.559 1 42.81 ? O2 U50 303 A 1 HETATM 5 N N7 U50 . . . D 4 26.124 43.762 -33.204 1 52.7 ? N7 U50 303 A 1 HETATM 6 C C20 U50 . . . D 4 25.639 44.065 -31.858 1 61.21 ? C20 U50 303 A 1 HETATM 7 C C19 U50 . . . D 4 27.516 43.618 -32.743 1 56.36 ? C19 U50 303 A 1 HETATM 8 C C18 U50 . . . D 4 27.085 43.96 -31.342 1 63.2 ? C18 U50 303 A 1 HETATM 9 N N6 U50 . . . D 4 27.576 45.316 -30.975 1 57.9 ? N6 U50 303 A 1 HETATM 10 C C17 U50 . . . D 4 27.748 45.63 -29.702 1 61.38 ? C17 U50 303 A 1 HETATM 11 O O1 U50 . . . D 4 27.525 44.826 -28.785 1 58.47 ? O1 U50 303 A 1 HETATM 12 C C14 U50 . . . D 4 28.263 47.078 -29.403 1 64.71 ? C14 U50 303 A 1 HETATM 13 N N4 U50 . . . D 4 29.172 47.402 -28.509 1 54.33 ? N4 U50 303 A 1 HETATM 14 C C16 U50 . . . D 4 29.844 46.414 -27.647 1 58 ? C16 U50 303 A 1 HETATM 15 C C15 U50 . . . D 4 27.874 48.268 -29.962 1 60.73 ? C15 U50 303 A 1 HETATM 16 CL CL2 U50 . . . D 4 26.713 48.416 -31.22 1 119.75 ? CL2 U50 303 A 1 HETATM 17 N N5 U50 . . . D 4 28.533 49.261 -29.411 1 50.5 ? N5 U50 303 A 1 HETATM 18 C C13 U50 . . . D 4 29.349 48.717 -28.501 1 53.53 ? C13 U50 303 A 1 HETATM 19 C C12 U50 . . . D 4 30.343 49.436 -27.584 1 48.37 ? C12 U50 303 A 1 HETATM 20 N N3 U50 . . . D 4 30.138 50.909 -27.57 1 47.12 ? N3 U50 303 A 1 HETATM 21 C C7 U50 . . . D 4 29.758 51.39 -26.406 1 45.87 ? C7 U50 303 A 1 HETATM 22 C C6 U50 . . . D 4 28.682 50.99 -25.635 1 42.94 ? C6 U50 303 A 1 HETATM 23 C C5 U50 . . . D 4 27.641 50.103 -25.808 1 40.32 ? C5 U50 303 A 1 HETATM 24 C C4 U50 . . . D 4 26.7 49.921 -24.808 1 39.06 ? C4 U50 303 A 1 HETATM 25 C C8 U50 . . . D 4 25.498 48.914 -24.965 1 39.73 ? C8 U50 303 A 1 HETATM 26 C C10 U50 . . . D 4 24.174 49.665 -24.889 1 38.63 ? C10 U50 303 A 1 HETATM 27 C C11 U50 . . . D 4 25.552 47.908 -23.843 1 37.37 ? C11 U50 303 A 1 HETATM 28 C C9 U50 . . . D 4 25.521 48.172 -26.358 1 40.02 ? C9 U50 303 A 1 HETATM 29 C C3 U50 . . . D 4 26.871 50.712 -23.68 1 37.8 ? C3 U50 303 A 1 HETATM 30 CL CL1 U50 . . . D 4 25.824 50.613 -22.377 1 54.46 ? CL1 U50 303 A 1 HETATM 31 C C2 U50 . . . D 4 27.877 51.617 -23.515 1 37.27 ? C2 U50 303 A 1 HETATM 32 C C1 U50 . . . D 4 28.791 51.732 -24.503 1 36.14 ? C1 U50 303 A 1 HETATM 33 N N2 U50 . . . D 4 29.852 52.458 -24.628 1 38.3 ? N2 U50 303 A 1 HETATM 34 N N1 U50 . . . D 4 30.418 52.27 -25.712 1 43.56 ? N1 U50 303 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 398 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #