data_8DNQ # _model_server_result.job_id PWct2OIdKONJpi1Y9bLsDw _model_server_result.datetime_utc '2024-11-13 05:01:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dnq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 8DNQ # _exptl.entry_id 8DNQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.85 _cell.angle_gamma 90 _cell.entry_id 8DNQ _cell.length_a 41.682 _cell.length_b 54.37 _cell.length_c 76.924 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DNQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,J,L 1 1 B,D,G,H,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ACE 1 C ACE 0 1_555 C N TRP 2 C TRP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 C CH3 ACE 1 C ACE 0 1_555 C SG CYS 16 C CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? covale ? covale3 C C SER 4 C SER 3 1_555 C N ALY 5 C ALY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 C C ALY 5 C ALY 4 1_555 C N LYS 6 C LYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 C C ALA 8 C ALA 7 1_555 C N ALY 9 C ALY 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 C C ALY 9 C ALY 8 1_555 C N TRP 10 C TRP 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale7 C C CYS 16 C CYS 15 1_555 C N NH2 17 C NH2 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 D C ACE 1 D ACE 0 1_555 D N TRP 2 D TRP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 D C SER 4 D SER 3 1_555 D N ALY 5 D ALY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 D C ALY 5 D ALY 4 1_555 D N LYS 6 D LYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale11 D C ALA 8 D ALA 7 1_555 D N ALY 9 D ALY 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale12 D C ALY 9 D ALY 8 1_555 D N TRP 10 D TRP 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale13 D C CYS 16 D CYS 15 1_555 D N NH2 17 D NH2 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 163 n n C1 C2 GOL sing 164 n n C1 H11 GOL sing 165 n n C1 H12 GOL sing 166 n n O1 HO1 GOL sing 167 n n C2 O2 GOL sing 168 n n C2 C3 GOL sing 169 n n C2 H2 GOL sing 170 n n O2 HO2 GOL sing 171 n n C3 O3 GOL sing 172 n n C3 H31 GOL sing 173 n n C3 H32 GOL sing 174 n n O3 HO3 GOL sing 175 n n # _atom_sites.entry_id 8DNQ _atom_sites.fract_transf_matrix[1][1] 0.023991 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001616 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018392 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013029 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 201 2 GOL GOL . F 3 GOL A 1 202 5 GOL GOL . G 3 GOL B 1 201 1 GOL GOL . H 3 GOL B 1 202 6 GOL GOL . I 3 GOL C 1 101 4 GOL GOL . J 4 HOH A 1 301 40 HOH HOH . J 4 HOH A 2 302 132 HOH HOH . J 4 HOH A 3 303 102 HOH HOH . J 4 HOH A 4 304 99 HOH HOH . J 4 HOH A 5 305 135 HOH HOH . J 4 HOH A 6 306 195 HOH HOH . J 4 HOH A 7 307 16 HOH HOH . J 4 HOH A 8 308 44 HOH HOH . J 4 HOH A 9 309 141 HOH HOH . J 4 HOH A 10 310 66 HOH HOH . J 4 HOH A 11 311 28 HOH HOH . J 4 HOH A 12 312 8 HOH HOH . J 4 HOH A 13 313 81 HOH HOH . J 4 HOH A 14 314 54 HOH HOH . J 4 HOH A 15 315 37 HOH HOH . J 4 HOH A 16 316 111 HOH HOH . J 4 HOH A 17 317 117 HOH HOH . J 4 HOH A 18 318 2 HOH HOH . J 4 HOH A 19 319 23 HOH HOH . J 4 HOH A 20 320 35 HOH HOH . J 4 HOH A 21 321 29 HOH HOH . J 4 HOH A 22 322 11 HOH HOH . J 4 HOH A 23 323 204 HOH HOH . J 4 HOH A 24 324 70 HOH HOH . J 4 HOH A 25 325 105 HOH HOH . J 4 HOH A 26 326 109 HOH HOH . J 4 HOH A 27 327 77 HOH HOH . J 4 HOH A 28 328 27 HOH HOH . J 4 HOH A 29 329 156 HOH HOH . J 4 HOH A 30 330 14 HOH HOH . J 4 HOH A 31 331 17 HOH HOH . J 4 HOH A 32 332 56 HOH HOH . J 4 HOH A 33 333 174 HOH HOH . J 4 HOH A 34 334 32 HOH HOH . J 4 HOH A 35 335 43 HOH HOH . J 4 HOH A 36 336 123 HOH HOH . J 4 HOH A 37 337 116 HOH HOH . J 4 HOH A 38 338 104 HOH HOH . J 4 HOH A 39 339 46 HOH HOH . J 4 HOH A 40 340 203 HOH HOH . J 4 HOH A 41 341 75 HOH HOH . J 4 HOH A 42 342 6 HOH HOH . J 4 HOH A 43 343 197 HOH HOH . J 4 HOH A 44 344 67 HOH HOH . J 4 HOH A 45 345 93 HOH HOH . J 4 HOH A 46 346 202 HOH HOH . J 4 HOH A 47 347 41 HOH HOH . J 4 HOH A 48 348 98 HOH HOH . J 4 HOH A 49 349 169 HOH HOH . J 4 HOH A 50 350 88 HOH HOH . J 4 HOH A 51 351 113 HOH HOH . J 4 HOH A 52 352 175 HOH HOH . J 4 HOH A 53 353 140 HOH HOH . J 4 HOH A 54 354 171 HOH HOH . J 4 HOH A 55 355 130 HOH HOH . J 4 HOH A 56 356 19 HOH HOH . J 4 HOH A 57 357 18 HOH HOH . J 4 HOH A 58 358 155 HOH HOH . J 4 HOH A 59 359 138 HOH HOH . J 4 HOH A 60 360 184 HOH HOH . J 4 HOH A 61 361 118 HOH HOH . J 4 HOH A 62 362 115 HOH HOH . J 4 HOH A 63 363 193 HOH HOH . J 4 HOH A 64 364 84 HOH HOH . J 4 HOH A 65 365 92 HOH HOH . J 4 HOH A 66 366 143 HOH HOH . J 4 HOH A 67 367 108 HOH HOH . J 4 HOH A 68 368 82 HOH HOH . J 4 HOH A 69 369 131 HOH HOH . J 4 HOH A 70 370 106 HOH HOH . J 4 HOH A 71 371 181 HOH HOH . J 4 HOH A 72 372 158 HOH HOH . J 4 HOH A 73 373 189 HOH HOH . J 4 HOH A 74 374 142 HOH HOH . J 4 HOH A 75 375 196 HOH HOH . J 4 HOH A 76 376 153 HOH HOH . J 4 HOH A 77 377 145 HOH HOH . J 4 HOH A 78 378 86 HOH HOH . J 4 HOH A 79 379 146 HOH HOH . J 4 HOH A 80 380 157 HOH HOH . J 4 HOH A 81 381 161 HOH HOH . J 4 HOH A 82 382 173 HOH HOH . J 4 HOH A 83 383 96 HOH HOH . J 4 HOH A 84 384 112 HOH HOH . J 4 HOH A 85 385 133 HOH HOH . J 4 HOH A 86 386 188 HOH HOH . J 4 HOH A 87 387 147 HOH HOH . J 4 HOH A 88 388 185 HOH HOH . J 4 HOH A 89 389 55 HOH HOH . J 4 HOH A 90 390 61 HOH HOH . J 4 HOH A 91 391 52 HOH HOH . J 4 HOH A 92 392 179 HOH HOH . K 4 HOH B 1 301 148 HOH HOH . K 4 HOH B 2 302 57 HOH HOH . K 4 HOH B 3 303 107 HOH HOH . K 4 HOH B 4 304 160 HOH HOH . K 4 HOH B 5 305 49 HOH HOH . K 4 HOH B 6 306 15 HOH HOH . K 4 HOH B 7 307 150 HOH HOH . K 4 HOH B 8 308 72 HOH HOH . K 4 HOH B 9 309 10 HOH HOH . K 4 HOH B 10 310 25 HOH HOH . K 4 HOH B 11 311 180 HOH HOH . K 4 HOH B 12 312 95 HOH HOH . K 4 HOH B 13 313 5 HOH HOH . K 4 HOH B 14 314 144 HOH HOH . K 4 HOH B 15 315 79 HOH HOH . K 4 HOH B 16 316 47 HOH HOH . K 4 HOH B 17 317 48 HOH HOH . K 4 HOH B 18 318 26 HOH HOH . K 4 HOH B 19 319 3 HOH HOH . K 4 HOH B 20 320 30 HOH HOH . K 4 HOH B 21 321 39 HOH HOH . K 4 HOH B 22 322 33 HOH HOH . K 4 HOH B 23 323 129 HOH HOH . K 4 HOH B 24 324 121 HOH HOH . K 4 HOH B 25 325 71 HOH HOH . K 4 HOH B 26 326 36 HOH HOH . K 4 HOH B 27 327 51 HOH HOH . K 4 HOH B 28 328 73 HOH HOH . K 4 HOH B 29 329 69 HOH HOH . K 4 HOH B 30 330 12 HOH HOH . K 4 HOH B 31 331 127 HOH HOH . K 4 HOH B 32 332 167 HOH HOH . K 4 HOH B 33 333 34 HOH HOH . K 4 HOH B 34 334 194 HOH HOH . K 4 HOH B 35 335 60 HOH HOH . K 4 HOH B 36 336 42 HOH HOH . K 4 HOH B 37 337 137 HOH HOH . K 4 HOH B 38 338 190 HOH HOH . K 4 HOH B 39 339 7 HOH HOH . K 4 HOH B 40 340 1 HOH HOH . K 4 HOH B 41 341 170 HOH HOH . K 4 HOH B 42 342 64 HOH HOH . K 4 HOH B 43 343 119 HOH HOH . K 4 HOH B 44 344 21 HOH HOH . K 4 HOH B 45 345 38 HOH HOH . K 4 HOH B 46 346 9 HOH HOH . K 4 HOH B 47 347 183 HOH HOH . K 4 HOH B 48 348 50 HOH HOH . K 4 HOH B 49 349 74 HOH HOH . K 4 HOH B 50 350 122 HOH HOH . K 4 HOH B 51 351 87 HOH HOH . K 4 HOH B 52 352 65 HOH HOH . K 4 HOH B 53 353 91 HOH HOH . K 4 HOH B 54 354 126 HOH HOH . K 4 HOH B 55 355 187 HOH HOH . K 4 HOH B 56 356 78 HOH HOH . K 4 HOH B 57 357 128 HOH HOH . K 4 HOH B 58 358 165 HOH HOH . K 4 HOH B 59 359 97 HOH HOH . K 4 HOH B 60 360 124 HOH HOH . K 4 HOH B 61 361 182 HOH HOH . K 4 HOH B 62 362 149 HOH HOH . K 4 HOH B 63 363 85 HOH HOH . K 4 HOH B 64 364 101 HOH HOH . K 4 HOH B 65 365 162 HOH HOH . K 4 HOH B 66 366 163 HOH HOH . K 4 HOH B 67 367 172 HOH HOH . K 4 HOH B 68 368 199 HOH HOH . K 4 HOH B 69 369 134 HOH HOH . K 4 HOH B 70 370 114 HOH HOH . K 4 HOH B 71 371 80 HOH HOH . K 4 HOH B 72 372 24 HOH HOH . K 4 HOH B 73 373 152 HOH HOH . K 4 HOH B 74 374 198 HOH HOH . K 4 HOH B 75 375 45 HOH HOH . K 4 HOH B 76 376 62 HOH HOH . K 4 HOH B 77 377 178 HOH HOH . L 4 HOH C 1 201 159 HOH HOH . L 4 HOH C 2 202 63 HOH HOH . L 4 HOH C 3 203 176 HOH HOH . L 4 HOH C 4 204 90 HOH HOH . L 4 HOH C 5 205 4 HOH HOH . L 4 HOH C 6 206 83 HOH HOH . L 4 HOH C 7 207 136 HOH HOH . L 4 HOH C 8 208 76 HOH HOH . L 4 HOH C 9 209 139 HOH HOH . L 4 HOH C 10 210 177 HOH HOH . L 4 HOH C 11 211 22 HOH HOH . L 4 HOH C 12 212 89 HOH HOH . L 4 HOH C 13 213 100 HOH HOH . M 4 HOH D 1 101 20 HOH HOH . M 4 HOH D 2 102 59 HOH HOH . M 4 HOH D 3 103 58 HOH HOH . M 4 HOH D 4 104 120 HOH HOH . M 4 HOH D 5 105 68 HOH HOH . M 4 HOH D 6 106 168 HOH HOH . M 4 HOH D 7 107 103 HOH HOH . M 4 HOH D 8 108 191 HOH HOH . M 4 HOH D 9 109 200 HOH HOH . M 4 HOH D 10 110 31 HOH HOH . M 4 HOH D 11 111 186 HOH HOH . M 4 HOH D 12 112 53 HOH HOH . M 4 HOH D 13 113 166 HOH HOH . M 4 HOH D 14 114 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 3.15 -20.741 0.212 1 44.36 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . E 3 4.472 -20.624 -0.193 1 52.56 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . E 3 3.03 -22.009 1.094 1 43.81 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . E 3 1.71 -22.269 1.449 1 48.24 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . E 3 3.614 -23.151 0.242 1 37.53 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . E 3 3.165 -24.333 0.829 1 44.96 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #