data_8DO2
#
_model_server_result.job_id            pt7xWbAwMhB5MYu4rx-I3A 
_model_server_result.datetime_utc      '2024-10-18 05:20:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8do2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    8DO2 
#
_exptl.entry_id    8DO2 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              581.789 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            9-benzyl-1,5-bis(4-methylbenzene-1-sulfonyl)-3-methylidene-1,5,9-triazacyclododecane 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DO2 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DO2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C31 H39 N3 O4 S2' 
_chem_comp.formula_weight    581.789 
_chem_comp.id                SXU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              9-benzyl-1,5-bis(4-methylbenzene-1-sulfonyl)-3-methylidene-1,5,9-triazacyclododecane 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Cyclotriazadisulfonamide;CADA 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C37 C36 SXU sing 288 n n 
C36 C38 SXU doub 289 n y 
C36 C35 SXU sing 290 n y 
C38 C39 SXU sing 291 n y 
C35 C34 SXU doub 292 n y 
C39 C33 SXU doub 293 n y 
C34 C33 SXU sing 294 n y 
C32 C31 SXU doub 295 n n 
C33 S02 SXU sing 296 n n 
C05 C06 SXU sing 297 n n 
C05 N03 SXU sing 298 n n 
C06 C07 SXU sing 299 n n 
C31 C04 SXU sing 300 n n 
C31 C30 SXU sing 301 n n 
C15 C14 SXU doub 302 n y 
C15 C10 SXU sing 303 n y 
C09 C10 SXU sing 304 n n 
C09 N08 SXU sing 305 n n 
N03 S02 SXU sing 306 n n 
N03 C04 SXU sing 307 n n 
C07 N08 SXU sing 308 n n 
C14 C13 SXU sing 309 n y 
S02 O40 SXU doub 310 n n 
S02 O01 SXU doub 311 n n 
C10 C11 SXU doub 312 n y 
C30 N19 SXU sing 313 n n 
N08 C16 SXU sing 314 n n 
C13 C12 SXU doub 315 n y 
C11 C12 SXU sing 316 n y 
N19 C18 SXU sing 317 n n 
N19 S20 SXU sing 318 n n 
C18 C17 SXU sing 319 n n 
C16 C17 SXU sing 320 n n 
O29 S20 SXU doub 321 n n 
O21 S20 SXU doub 322 n n 
S20 C22 SXU sing 323 n n 
C22 C23 SXU doub 324 n y 
C22 C28 SXU sing 325 n y 
C23 C24 SXU sing 326 n y 
C28 C27 SXU doub 327 n y 
C24 C25 SXU doub 328 n y 
C27 C25 SXU sing 329 n y 
C25 C26 SXU sing 330 n n 
C13 H131 SXU sing 331 n n 
C15 H151 SXU sing 332 n n 
C17 H171 SXU sing 333 n n 
C17 H172 SXU sing 334 n n 
C24 H241 SXU sing 335 n n 
C26 H261 SXU sing 336 n n 
C26 H262 SXU sing 337 n n 
C26 H263 SXU sing 338 n n 
C28 H281 SXU sing 339 n n 
C04 H041 SXU sing 340 n n 
C04 H042 SXU sing 341 n n 
C05 H052 SXU sing 342 n n 
C05 H051 SXU sing 343 n n 
C06 H062 SXU sing 344 n n 
C06 H061 SXU sing 345 n n 
C07 H072 SXU sing 346 n n 
C07 H071 SXU sing 347 n n 
C09 H091 SXU sing 348 n n 
C09 H092 SXU sing 349 n n 
C11 H111 SXU sing 350 n n 
C12 H121 SXU sing 351 n n 
C14 H141 SXU sing 352 n n 
C16 H161 SXU sing 353 n n 
C16 H162 SXU sing 354 n n 
C18 H182 SXU sing 355 n n 
C18 H181 SXU sing 356 n n 
C23 H231 SXU sing 357 n n 
C27 H271 SXU sing 358 n n 
C30 H301 SXU sing 359 n n 
C30 H302 SXU sing 360 n n 
C32 H322 SXU sing 361 n n 
C32 H321 SXU sing 362 n n 
C34 H341 SXU sing 363 n n 
C35 H351 SXU sing 364 n n 
C37 H372 SXU sing 365 n n 
C37 H371 SXU sing 366 n n 
C37 H373 SXU sing 367 n n 
C38 H381 SXU sing 368 n n 
C39 H391 SXU sing 369 n n 
#
_atom_sites.entry_id                     8DO2 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          D 
_pdbx_nonpoly_scheme.entity_id        4 
_pdbx_nonpoly_scheme.mon_id           SXU 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      501 
_pdbx_nonpoly_scheme.auth_seq_num     501 
_pdbx_nonpoly_scheme.pdb_mon_id       SXU 
_pdbx_nonpoly_scheme.auth_mon_id      LIG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 SXU . . . D 4 145.407 116.769 157.859 1 47.21 ? C10 SXU 501 A 1 
HETATM 2 C C13 SXU . . . D 4 146.243 114.206 158.569 1 47.21 ? C13 SXU 501 A 1 
HETATM 3 C C15 SXU . . . D 4 144.769 115.644 157.344 1 47.21 ? C15 SXU 501 A 1 
HETATM 4 C C17 SXU . . . D 4 143.372 120.121 159.96 1 47.21 ? C17 SXU 501 A 1 
HETATM 5 C C22 SXU . . . D 4 140.415 119.914 162.355 1 47.21 ? C22 SXU 501 A 1 
HETATM 6 C C24 SXU . . . D 4 141.868 120.687 164.16 1 47.21 ? C24 SXU 501 A 1 
HETATM 7 C C26 SXU . . . D 4 142.083 119.448 166.314 1 47.21 ? C26 SXU 501 A 1 
HETATM 8 C C28 SXU . . . D 4 140.048 118.823 163.106 1 47.21 ? C28 SXU 501 A 1 
HETATM 9 C C04 SXU . . . D 4 141.867 122.843 157.887 1 47.21 ? C04 SXU 501 A 1 
HETATM 10 C C05 SXU . . . D 4 143.979 122.334 156.377 1 47.21 ? C05 SXU 501 A 1 
HETATM 11 C C06 SXU . . . D 4 144.243 120.839 156.663 1 47.21 ? C06 SXU 501 A 1 
HETATM 12 C C07 SXU . . . D 4 145.37 120.585 157.691 1 47.21 ? C07 SXU 501 A 1 
HETATM 13 C C09 SXU . . . D 4 144.895 118.184 157.418 1 47.21 ? C09 SXU 501 A 1 
HETATM 14 C C11 SXU . . . D 4 146.472 116.603 158.734 1 47.21 ? C11 SXU 501 A 1 
HETATM 15 C C12 SXU . . . D 4 146.889 115.321 159.09 1 47.21 ? C12 SXU 501 A 1 
HETATM 16 C C14 SXU . . . D 4 145.184 114.366 157.695 1 47.21 ? C14 SXU 501 A 1 
HETATM 17 C C16 SXU . . . D 4 144.629 119.252 159.708 1 47.21 ? C16 SXU 501 A 1 
HETATM 18 C C18 SXU . . . D 4 142.065 119.406 159.588 1 47.21 ? C18 SXU 501 A 1 
HETATM 19 C C23 SXU . . . D 4 141.303 120.812 162.91 1 47.21 ? C23 SXU 501 A 1 
HETATM 20 C C25 SXU . . . D 4 141.49 119.606 164.923 1 47.21 ? C25 SXU 501 A 1 
HETATM 21 C C27 SXU . . . D 4 140.588 118.677 164.393 1 47.21 ? C27 SXU 501 A 1 
HETATM 22 C C30 SXU . . . D 4 140.397 120.556 158.091 1 47.21 ? C30 SXU 501 A 1 
HETATM 23 C C31 SXU . . . D 4 141.064 121.676 157.234 1 47.21 ? C31 SXU 501 A 1 
HETATM 24 C C32 SXU . . . D 4 140.876 121.628 155.937 1 47.21 ? C32 SXU 501 A 1 
HETATM 25 C C33 SXU . . . D 4 143.708 125.656 156.214 1 47.21 ? C33 SXU 501 A 1 
HETATM 26 C C34 SXU . . . D 4 142.453 126.154 155.869 1 47.21 ? C34 SXU 501 A 1 
HETATM 27 C C35 SXU . . . D 4 142.288 126.907 154.697 1 47.21 ? C35 SXU 501 A 1 
HETATM 28 C C36 SXU . . . D 4 143.395 127.154 153.871 1 47.21 ? C36 SXU 501 A 1 
HETATM 29 C C37 SXU . . . D 4 143.192 127.987 152.59 1 47.21 ? C37 SXU 501 A 1 
HETATM 30 C C38 SXU . . . D 4 144.66 126.65 154.215 1 47.21 ? C38 SXU 501 A 1 
HETATM 31 C C39 SXU . . . D 4 144.816 125.896 155.389 1 47.21 ? C39 SXU 501 A 1 
HETATM 32 N N03 SXU . . . D 4 143.292 123.05 157.477 1 47.21 ? N03 SXU 501 A 1 
HETATM 33 N N08 SXU . . . D 4 145.238 119.28 158.36 1 47.21 ? N08 SXU 501 A 1 
HETATM 34 N N19 SXU . . . D 4 140.947 120.335 159.43 1 47.21 ? N19 SXU 501 A 1 
HETATM 35 O O01 SXU . . . D 4 143.178 125.285 158.882 1 47.21 ? O01 SXU 501 A 1 
HETATM 36 O O21 SXU . . . D 4 138.813 121.339 160.576 1 47.21 ? O21 SXU 501 A 1 
HETATM 37 O O29 SXU . . . D 4 138.673 119.216 160.361 1 47.21 ? O29 SXU 501 A 1 
HETATM 38 O O40 SXU . . . D 4 145.268 124.65 158.255 1 47.21 ? O40 SXU 501 A 1 
HETATM 39 S S02 SXU . . . D 4 143.887 124.657 157.763 1 47.21 ? S02 SXU 501 A 1 
HETATM 40 S S20 SXU . . . D 4 139.725 120.213 160.662 1 47.21 ? S20 SXU 501 A 1 
HETATM 41 H H131 SXU . . . D 4 146.572 113.201 158.849 1 47.21 ? H131 SXU 501 A 1 
HETATM 42 H H151 SXU . . . D 4 143.943 115.772 156.661 1 47.21 ? H151 SXU 501 A 1 
HETATM 43 H H171 SXU . . . D 4 143.322 120.335 161.023 1 47.21 ? H171 SXU 501 A 1 
HETATM 44 H H172 SXU . . . D 4 143.435 121.07 159.43 1 47.21 ? H172 SXU 501 A 1 
HETATM 45 H H241 SXU . . . D 4 142.576 121.435 164.531 1 47.21 ? H241 SXU 501 A 1 
HETATM 46 H H261 SXU . . . D 4 143.156 119.534 166.236 1 47.21 ? H261 SXU 501 A 1 
HETATM 47 H H262 SXU . . . D 4 141.803 118.468 166.676 1 47.21 ? H262 SXU 501 A 1 
HETATM 48 H H263 SXU . . . D 4 141.689 120.224 166.972 1 47.21 ? H263 SXU 501 A 1 
HETATM 49 H H281 SXU . . . D 4 139.344 118.119 162.679 1 47.21 ? H281 SXU 501 A 1 
HETATM 50 H H041 SXU . . . D 4 141.846 122.702 158.955 1 47.21 ? H041 SXU 501 A 1 
HETATM 51 H H042 SXU . . . D 4 141.331 123.754 157.656 1 47.21 ? H042 SXU 501 A 1 
HETATM 52 H H052 SXU . . . D 4 143.429 122.451 155.447 1 47.21 ? H052 SXU 501 A 1 
HETATM 53 H H051 SXU . . . D 4 144.949 122.82 156.254 1 47.21 ? H051 SXU 501 A 1 
HETATM 54 H H062 SXU . . . D 4 144.541 120.356 155.732 1 47.21 ? H062 SXU 501 A 1 
HETATM 55 H H061 SXU . . . D 4 143.33 120.373 157.015 1 47.21 ? H061 SXU 501 A 1 
HETATM 56 H H072 SXU . . . D 4 145.372 121.383 158.427 1 47.21 ? H072 SXU 501 A 1 
HETATM 57 H H071 SXU . . . D 4 146.32 120.595 157.163 1 47.21 ? H071 SXU 501 A 1 
HETATM 58 H H091 SXU . . . D 4 143.822 118.138 157.272 1 47.21 ? H091 SXU 501 A 1 
HETATM 59 H H092 SXU . . . D 4 145.359 118.412 156.468 1 47.21 ? H092 SXU 501 A 1 
HETATM 60 H H111 SXU . . . D 4 146.974 117.467 159.139 1 47.21 ? H111 SXU 501 A 1 
HETATM 61 H H121 SXU . . . D 4 147.723 115.185 159.777 1 47.21 ? H121 SXU 501 A 1 
HETATM 62 H H141 SXU . . . D 4 144.678 113.499 157.288 1 47.21 ? H141 SXU 501 A 1 
HETATM 63 H H161 SXU . . . D 4 145.388 119.595 160.404 1 47.21 ? H161 SXU 501 A 1 
HETATM 64 H H162 SXU . . . D 4 144.389 118.23 159.955 1 47.21 ? H162 SXU 501 A 1 
HETATM 65 H H182 SXU . . . D 4 142.198 118.872 158.654 1 47.21 ? H182 SXU 501 A 1 
HETATM 66 H H181 SXU . . . D 4 141.808 118.702 160.373 1 47.21 ? H181 SXU 501 A 1 
HETATM 67 H H231 SXU . . . D 4 141.573 121.651 162.31 1 47.21 ? H231 SXU 501 A 1 
HETATM 68 H H271 SXU . . . D 4 140.298 117.834 164.986 1 47.21 ? H271 SXU 501 A 1 
HETATM 69 H H301 SXU . . . D 4 140.426 119.62 157.55 1 47.21 ? H301 SXU 501 A 1 
HETATM 70 H H302 SXU . . . D 4 139.37 120.856 158.23 1 47.21 ? H302 SXU 501 A 1 
HETATM 71 H H322 SXU . . . D 4 141.296 122.383 155.295 1 47.21 ? H322 SXU 501 A 1 
HETATM 72 H H321 SXU . . . D 4 140.3 120.814 155.516 1 47.21 ? H321 SXU 501 A 1 
HETATM 73 H H341 SXU . . . D 4 141.609 125.968 156.492 1 47.21 ? H341 SXU 501 A 1 
HETATM 74 H H351 SXU . . . D 4 141.311 127.293 154.425 1 47.21 ? H351 SXU 501 A 1 
HETATM 75 H H372 SXU . . . D 4 144.136 128.102 152.065 1 47.21 ? H372 SXU 501 A 1 
HETATM 76 H H371 SXU . . . D 4 142.806 128.961 152.867 1 47.21 ? H371 SXU 501 A 1 
HETATM 77 H H373 SXU . . . D 4 142.474 127.487 151.956 1 47.21 ? H373 SXU 501 A 1 
HETATM 78 H H381 SXU . . . D 4 145.516 126.846 153.569 1 47.21 ? H381 SXU 501 A 1 
HETATM 79 H H391 SXU . . . D 4 145.787 125.507 155.657 1 47.21 ? H391 SXU 501 A 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           79 
#