data_8DO3
#
_model_server_result.job_id            HkGwiQYsoUJEuUzZtAqmZQ 
_model_server_result.datetime_utc      '2024-12-22 01:23:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8do3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    8DO3 
#
_exptl.entry_id    8DO3 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              631.444 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N'-(4-chlorophenyl)-N-[(4R)-3-(4-chlorophenyl)-5,5-dimethyl-1-(2-{(2E)-2-[(2E)-3-(5-nitrofuran-2-yl)prop-2-en-1-ylidene]hydrazinyl}-2-oxoethyl)-2-oxoimidazolidin-4-yl]-N-hydroxyurea" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DO3 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DO3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H26 Cl2 N7 O7' 
_chem_comp.formula_weight    631.444 
_chem_comp.id                SWR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N'-(4-chlorophenyl)-N-[(4R)-3-(4-chlorophenyl)-5,5-dimethyl-1-(2-{(2E)-2-[(2E)-3-(5-nitrofuran-2-yl)prop-2-en-1-ylidene]hydrazinyl}-2-oxoethyl)-2-oxoimidazolidin-4-yl]-N-hydroxyurea" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Eeyarestatin I' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL C16 SWR sing 288 n n 
C16 C15 SWR doub 289 n y 
C16 C17 SWR sing 290 n y 
C15 C14 SWR sing 291 n y 
C22 C21 SWR doub 292 n y 
C22 C23 SWR sing 293 n y 
C21 C20 SWR sing 294 n y 
C17 C18 SWR doub 295 n y 
C23 CL1 SWR sing 296 n n 
C23 C24 SWR doub 297 n y 
C20 N6 SWR sing 298 n n 
C20 C25 SWR doub 299 n y 
C14 C13 SWR doub 300 n y 
N6 C19 SWR sing 301 n n 
C24 C25 SWR sing 302 n y 
C18 C13 SWR sing 303 n y 
C13 N SWR sing 304 n n 
C19 N5 SWR sing 305 n n 
C19 O5 SWR doub 306 n n 
N5 C2 SWR sing 307 n n 
N5 O6 SWR sing 308 n n 
C2 N SWR sing 309 n n 
C2 C1 SWR sing 310 n n 
N C3 SWR sing 311 n n 
O1 C5 SWR doub 312 n n 
C3 O SWR doub 313 n n 
C3 N1 SWR sing 314 n n 
C1 C SWR sing 315 n n 
C1 N1 SWR sing 316 n n 
C1 C26 SWR sing 317 n n 
N1 C4 SWR sing 318 n n 
C5 C4 SWR sing 319 n n 
C5 N2 SWR sing 320 n n 
N2 N3 SWR sing 321 n n 
N3 C6 SWR doub 322 e n 
C6 C7 SWR sing 323 n n 
C7 C8 SWR doub 324 e n 
C8 C9 SWR sing 325 n n 
C9 C10 SWR doub 326 n y 
C9 O2 SWR sing 327 n y 
C10 C11 SWR sing 328 n y 
O2 C12 SWR sing 329 n y 
C12 C11 SWR doub 330 n y 
C12 N4 SWR sing 331 n n 
O4 N4 SWR sing 332 n n 
N4 O3 SWR doub 333 n n 
C7 H8 SWR sing 334 n n 
C8 H9 SWR sing 335 n n 
N2 H6 SWR sing 336 n n 
C6 H7 SWR sing 337 n n 
C4 H4 SWR sing 338 n n 
C4 H5 SWR sing 339 n n 
C2 H3 SWR sing 340 n n 
C H1 SWR sing 341 n n 
C H SWR sing 342 n n 
C H2 SWR sing 343 n n 
C10 H10 SWR sing 344 n n 
C11 H11 SWR sing 345 n n 
C14 H12 SWR sing 346 n n 
C15 H13 SWR sing 347 n n 
C17 H14 SWR sing 348 n n 
C18 H15 SWR sing 349 n n 
C21 H17 SWR sing 350 n n 
C22 H18 SWR sing 351 n n 
C24 H19 SWR sing 352 n n 
C25 H20 SWR sing 353 n n 
C26 H22 SWR sing 354 n n 
C26 H23 SWR sing 355 n n 
C26 H24 SWR sing 356 n n 
N6 H16 SWR sing 357 n n 
O6 H21 SWR sing 358 n n 
O4 H25 SWR sing 359 n n 
#
_atom_sites.entry_id                     8DO3 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          D 
_pdbx_nonpoly_scheme.entity_id        4 
_pdbx_nonpoly_scheme.mon_id           SWR 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      501 
_pdbx_nonpoly_scheme.auth_seq_num     501 
_pdbx_nonpoly_scheme.pdb_mon_id       SWR 
_pdbx_nonpoly_scheme.auth_mon_id      XXX 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 SWR . . . D 4 122.626 123.998 111.391 1 62 ? N1 SWR 501 A 1 
HETATM 2 C C7 SWR . . . D 4 123.868 128.335 115.649 1 62 ? C7 SWR 501 A 1 
HETATM 3 C C8 SWR . . . D 4 124.212 129.35 116.449 1 62 ? C8 SWR 501 A 1 
HETATM 4 N N2 SWR . . . D 4 123.842 127.375 112.268 1 62 ? N2 SWR 501 A 1 
HETATM 5 C C9 SWR . . . D 4 123.866 129.306 117.84 1 62 ? C9 SWR 501 A 1 
HETATM 6 O O1 SWR . . . D 4 123.482 126.36 110.282 1 62 ? O1 SWR 501 A 1 
HETATM 7 C C1 SWR . . . D 4 123.525 122.848 111.092 1 62 ? C1 SWR 501 A 1 
HETATM 8 O O5 SWR . . . D 4 125.235 120.529 110.217 1 62 ? O5 SWR 501 A 1 
HETATM 9 C C5 SWR . . . D 4 123.436 126.34 111.509 1 62 ? C5 SWR 501 A 1 
HETATM 10 C C6 SWR . . . D 4 124.172 128.321 114.288 1 62 ? C6 SWR 501 A 1 
HETATM 11 N N3 SWR . . . D 4 123.774 127.29 113.64 1 62 ? N3 SWR 501 A 1 
HETATM 12 C C4 SWR . . . D 4 122.906 125.129 112.257 1 62 ? C4 SWR 501 A 1 
HETATM 13 O O4 SWR . . . D 4 124.606 132.037 120.584 1 62 ? O4 SWR 501 A 1 
HETATM 14 C C3 SWR . . . D 4 121.442 123.887 110.711 1 62 ? C3 SWR 501 A 1 
HETATM 15 O O3 SWR . . . D 4 123.633 130.744 122.026 1 62 ? O3 SWR 501 A 1 
HETATM 16 C C2 SWR . . . D 4 123.058 122.583 109.608 1 62 ? C2 SWR 501 A 1 
HETATM 17 N N4 SWR . . . D 4 124.015 131.006 120.89 1 62 ? N4 SWR 501 A 1 
HETATM 18 N N SWR . . . D 4 121.667 123.056 109.636 1 62 ? N SWR 501 A 1 
HETATM 19 C C SWR . . . D 4 124.998 123.256 111.121 1 62 ? C SWR 501 A 1 
HETATM 20 O O SWR . . . D 4 120.397 124.433 111.01 1 62 ? O SWR 501 A 1 
HETATM 21 C C10 SWR . . . D 4 123.21 128.372 118.582 1 62 ? C10 SWR 501 A 1 
HETATM 22 C C11 SWR . . . D 4 123.142 128.86 119.902 1 62 ? C11 SWR 501 A 1 
HETATM 23 C C12 SWR . . . D 4 123.764 130.051 119.866 1 62 ? C12 SWR 501 A 1 
HETATM 24 C C13 SWR . . . D 4 120.704 122.715 108.635 1 62 ? C13 SWR 501 A 1 
HETATM 25 C C14 SWR . . . D 4 120.831 121.536 107.912 1 62 ? C14 SWR 501 A 1 
HETATM 26 C C15 SWR . . . D 4 119.916 121.217 106.926 1 62 ? C15 SWR 501 A 1 
HETATM 27 C C16 SWR . . . D 4 118.876 122.081 106.668 1 62 ? C16 SWR 501 A 1 
HETATM 28 C C17 SWR . . . D 4 118.73 123.258 107.371 1 62 ? C17 SWR 501 A 1 
HETATM 29 C C18 SWR . . . D 4 119.644 123.571 108.362 1 62 ? C18 SWR 501 A 1 
HETATM 30 C C19 SWR . . . D 4 124.653 120.708 109.158 1 62 ? C19 SWR 501 A 1 
HETATM 31 C C20 SWR . . . D 4 126.316 119.618 107.758 1 62 ? C20 SWR 501 A 1 
HETATM 32 C C21 SWR . . . D 4 127.466 119.975 107.065 1 62 ? C21 SWR 501 A 1 
HETATM 33 C C22 SWR . . . D 4 128.551 119.118 107.025 1 62 ? C22 SWR 501 A 1 
HETATM 34 C C23 SWR . . . D 4 128.477 117.908 107.68 1 62 ? C23 SWR 501 A 1 
HETATM 35 C C24 SWR . . . D 4 127.336 117.522 108.348 1 62 ? C24 SWR 501 A 1 
HETATM 36 C C25 SWR . . . D 4 126.253 118.38 108.383 1 62 ? C25 SWR 501 A 1 
HETATM 37 C C26 SWR . . . D 4 123.263 121.739 112.11 1 62 ? C26 SWR 501 A 1 
HETATM 38 N N5 SWR . . . D 4 123.325 121.131 109.222 1 62 ? N5 SWR 501 A 1 
HETATM 39 N N6 SWR . . . D 4 125.232 120.499 107.95 1 62 ? N6 SWR 501 A 1 
HETATM 40 O O2 SWR . . . D 4 124.225 130.369 118.637 1 62 ? O2 SWR 501 A 1 
HETATM 41 O O6 SWR . . . D 4 122.471 120.21 109.845 1 62 ? O6 SWR 501 A 1 
HETATM 42 CL CL SWR . . . D 4 117.713 121.671 105.438 1 62 ? CL SWR 501 A 1 
HETATM 43 CL CL1 SWR . . . D 4 129.871 116.868 107.71 1 62 ? CL1 SWR 501 A 1 
HETATM 44 H H8 SWR . . . D 4 123.337 127.464 116.032 1 62 ? H8 SWR 501 A 1 
HETATM 45 H H9 SWR . . . D 4 124.756 130.227 116.098 1 62 ? H9 SWR 501 A 1 
HETATM 46 H H6 SWR . . . D 4 124.188 128.207 111.801 1 62 ? H6 SWR 501 A 1 
HETATM 47 H H7 SWR . . . D 4 124.718 129.176 113.894 1 62 ? H7 SWR 501 A 1 
HETATM 48 H H4 SWR . . . D 4 123.631 124.846 113.02 1 62 ? H4 SWR 501 A 1 
HETATM 49 H H5 SWR . . . D 4 122.007 125.4 112.804 1 62 ? H5 SWR 501 A 1 
HETATM 50 H H3 SWR . . . D 4 123.586 123.223 108.899 1 62 ? H3 SWR 501 A 1 
HETATM 51 H H1 SWR . . . D 4 125.125 124.332 111.2 1 62 ? H1 SWR 501 A 1 
HETATM 52 H H SWR . . . D 4 125.539 122.936 110.235 1 62 ? H SWR 501 A 1 
HETATM 53 H H2 SWR . . . D 4 125.518 122.82 111.973 1 62 ? H2 SWR 501 A 1 
HETATM 54 H H10 SWR . . . D 4 122.809 127.416 118.25 1 62 ? H10 SWR 501 A 1 
HETATM 55 H H11 SWR . . . D 4 122.678 128.372 120.757 1 62 ? H11 SWR 501 A 1 
HETATM 56 H H12 SWR . . . D 4 121.645 120.843 108.111 1 62 ? H12 SWR 501 A 1 
HETATM 57 H H13 SWR . . . D 4 120.013 120.291 106.365 1 62 ? H13 SWR 501 A 1 
HETATM 58 H H14 SWR . . . D 4 117.911 123.938 107.141 1 62 ? H14 SWR 501 A 1 
HETATM 59 H H15 SWR . . . D 4 119.517 124.493 108.928 1 62 ? H15 SWR 501 A 1 
HETATM 60 H H17 SWR . . . D 4 127.531 120.933 106.549 1 62 ? H17 SWR 501 A 1 
HETATM 61 H H18 SWR . . . D 4 129.45 119.389 106.475 1 62 ? H18 SWR 501 A 1 
HETATM 62 H H19 SWR . . . D 4 127.291 116.552 108.841 1 62 ? H19 SWR 501 A 1 
HETATM 63 H H20 SWR . . . D 4 125.358 118.056 108.915 1 62 ? H20 SWR 501 A 1 
HETATM 64 H H22 SWR . . . D 4 123.758 120.812 111.835 1 62 ? H22 SWR 501 A 1 
HETATM 65 H H23 SWR . . . D 4 122.204 121.494 112.193 1 62 ? H23 SWR 501 A 1 
HETATM 66 H H24 SWR . . . D 4 123.629 121.987 113.106 1 62 ? H24 SWR 501 A 1 
HETATM 67 H H16 SWR . . . D 4 124.9 120.973 107.114 1 62 ? H16 SWR 501 A 1 
HETATM 68 H H21 SWR . . . D 4 123.106 119.492 110.106 1 62 ? H21 SWR 501 A 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           68 
#