data_8DO8
#
_model_server_result.job_id            5VUa0iEzZiXaky34o96zvQ 
_model_server_result.datetime_utc      '2024-11-22 21:38:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8do8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":203}' 
#
_entry.id    8DO8 
#
_exptl.entry_id    8DO8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    38 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DO8 
_cell.length_a            45.453 
_cell.length_b            139.86 
_cell.length_c            147.595 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DO8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
C,D,F,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,UA,VA,XA 1 1 
A,B,E,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,RA,SA,TA,WA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
? 3 CA N N 
? 3 DA N N 
? 3 EA N N 
? 3 FA N N 
? 3 GA N N 
? 3 HA N N 
? 3 IA N N 
? 3 JA N N 
? 3 KA N N 
? 3 LA N N 
? 3 MA N N 
? 3 NA N N 
? 3 OA N N 
? 3 PA N N 
? 3 QA N N 
? 3 RA N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8DO8 
_atom_sites.fract_transf_matrix[1][1]    0.022001 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00715 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006775 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 GOL A 1 201 2 GOL GOL . 
H 3 GOL A 1 202 4 GOL GOL . 
I 3 GOL A 1 203 5 GOL GOL . 
J 3 GOL A 1 204 7 GOL GOL . 
K 3 GOL A 1 205 8 GOL GOL . 
L 3 GOL A 1 206 9 GOL GOL . 
M 3 GOL A 1 207 10 GOL GOL . 
N 3 GOL A 1 208 11 GOL GOL . 
O 3 GOL A 1 209 12 GOL GOL . 
P 3 GOL A 1 210 13 GOL GOL . 
Q 3 GOL A 1 211 14 GOL GOL . 
R 3 GOL A 1 212 23 GOL GOL . 
S 3 GOL A 1 213 30 GOL GOL . 
T 3 GOL B 1 201 16 GOL GOL . 
U 3 GOL B 1 202 18 GOL GOL . 
V 3 GOL B 1 203 19 GOL GOL . 
W 3 GOL B 1 204 20 GOL GOL . 
X 3 GOL B 1 205 22 GOL GOL . 
Y 3 GOL B 1 206 24 GOL GOL . 
Z 3 GOL B 1 207 26 GOL GOL . 
AA 3 GOL B 1 208 27 GOL GOL . 
BA 3 GOL C 1 201 34 GOL GOL . 
CA 3 GOL C 1 202 35 GOL GOL . 
DA 3 GOL C 1 203 38 GOL GOL . 
EA 3 GOL C 1 204 39 GOL GOL . 
FA 3 GOL C 1 205 40 GOL GOL . 
GA 3 GOL C 1 206 42 GOL GOL . 
HA 3 GOL C 1 207 43 GOL GOL . 
IA 3 GOL C 1 208 44 GOL GOL . 
JA 3 GOL C 1 209 45 GOL GOL . 
KA 3 GOL C 1 210 47 GOL GOL . 
LA 3 GOL D 1 201 46 GOL GOL . 
MA 3 GOL D 1 202 48 GOL GOL . 
NA 3 GOL D 1 203 49 GOL GOL . 
OA 3 GOL D 1 204 55 GOL GOL . 
PA 3 GOL D 1 205 56 GOL GOL . 
QA 3 GOL D 1 206 58 GOL GOL . 
RA 3 GOL E 1 1101 17 GOL GOL . 
SA 4 HOH A 1 301 174 HOH HOH . 
SA 4 HOH A 2 302 348 HOH HOH . 
SA 4 HOH A 3 303 225 HOH HOH . 
SA 4 HOH A 4 304 1 HOH HOH . 
SA 4 HOH A 5 305 343 HOH HOH . 
SA 4 HOH A 6 306 268 HOH HOH . 
SA 4 HOH A 7 307 124 HOH HOH . 
SA 4 HOH A 8 308 342 HOH HOH . 
SA 4 HOH A 9 309 29 HOH HOH . 
SA 4 HOH A 10 310 123 HOH HOH . 
SA 4 HOH A 11 311 21 HOH HOH . 
SA 4 HOH A 12 312 158 HOH HOH . 
SA 4 HOH A 13 313 140 HOH HOH . 
SA 4 HOH A 14 314 44 HOH HOH . 
SA 4 HOH A 15 315 168 HOH HOH . 
SA 4 HOH A 16 316 3 HOH HOH . 
SA 4 HOH A 17 317 64 HOH HOH . 
SA 4 HOH A 18 318 121 HOH HOH . 
SA 4 HOH A 19 319 42 HOH HOH . 
SA 4 HOH A 20 320 9 HOH HOH . 
SA 4 HOH A 21 321 7 HOH HOH . 
SA 4 HOH A 22 322 57 HOH HOH . 
SA 4 HOH A 23 323 214 HOH HOH . 
SA 4 HOH A 24 324 41 HOH HOH . 
SA 4 HOH A 25 325 328 HOH HOH . 
SA 4 HOH A 26 326 43 HOH HOH . 
SA 4 HOH A 27 327 178 HOH HOH . 
SA 4 HOH A 28 328 48 HOH HOH . 
SA 4 HOH A 29 329 40 HOH HOH . 
SA 4 HOH A 30 330 177 HOH HOH . 
SA 4 HOH A 31 331 157 HOH HOH . 
SA 4 HOH A 32 332 22 HOH HOH . 
SA 4 HOH A 33 333 347 HOH HOH . 
SA 4 HOH A 34 334 187 HOH HOH . 
SA 4 HOH A 35 335 72 HOH HOH . 
SA 4 HOH A 36 336 173 HOH HOH . 
SA 4 HOH A 37 337 191 HOH HOH . 
SA 4 HOH A 38 338 20 HOH HOH . 
SA 4 HOH A 39 339 136 HOH HOH . 
SA 4 HOH A 40 340 260 HOH HOH . 
SA 4 HOH A 41 341 61 HOH HOH . 
SA 4 HOH A 42 342 171 HOH HOH . 
SA 4 HOH A 43 343 184 HOH HOH . 
SA 4 HOH A 44 344 193 HOH HOH . 
SA 4 HOH A 45 345 267 HOH HOH . 
SA 4 HOH A 46 346 175 HOH HOH . 
SA 4 HOH A 47 347 339 HOH HOH . 
SA 4 HOH A 48 348 264 HOH HOH . 
SA 4 HOH A 49 349 222 HOH HOH . 
TA 4 HOH B 1 301 221 HOH HOH . 
TA 4 HOH B 2 302 217 HOH HOH . 
TA 4 HOH B 3 303 68 HOH HOH . 
TA 4 HOH B 4 304 216 HOH HOH . 
TA 4 HOH B 5 305 34 HOH HOH . 
TA 4 HOH B 6 306 120 HOH HOH . 
TA 4 HOH B 7 307 16 HOH HOH . 
TA 4 HOH B 8 308 152 HOH HOH . 
TA 4 HOH B 9 309 78 HOH HOH . 
TA 4 HOH B 10 310 340 HOH HOH . 
TA 4 HOH B 11 311 6 HOH HOH . 
TA 4 HOH B 12 312 284 HOH HOH . 
TA 4 HOH B 13 313 37 HOH HOH . 
TA 4 HOH B 14 314 148 HOH HOH . 
TA 4 HOH B 15 315 36 HOH HOH . 
TA 4 HOH B 16 316 215 HOH HOH . 
TA 4 HOH B 17 317 15 HOH HOH . 
TA 4 HOH B 18 318 117 HOH HOH . 
TA 4 HOH B 19 319 190 HOH HOH . 
TA 4 HOH B 20 320 47 HOH HOH . 
TA 4 HOH B 21 321 23 HOH HOH . 
TA 4 HOH B 22 322 2 HOH HOH . 
TA 4 HOH B 23 323 24 HOH HOH . 
TA 4 HOH B 24 324 277 HOH HOH . 
TA 4 HOH B 25 325 5 HOH HOH . 
TA 4 HOH B 26 326 119 HOH HOH . 
TA 4 HOH B 27 327 63 HOH HOH . 
TA 4 HOH B 28 328 4 HOH HOH . 
TA 4 HOH B 29 329 52 HOH HOH . 
TA 4 HOH B 30 330 301 HOH HOH . 
TA 4 HOH B 31 331 150 HOH HOH . 
TA 4 HOH B 32 332 338 HOH HOH . 
TA 4 HOH B 33 333 151 HOH HOH . 
TA 4 HOH B 34 334 153 HOH HOH . 
TA 4 HOH B 35 335 135 HOH HOH . 
TA 4 HOH B 36 336 273 HOH HOH . 
TA 4 HOH B 37 337 125 HOH HOH . 
TA 4 HOH B 38 338 49 HOH HOH . 
TA 4 HOH B 39 339 155 HOH HOH . 
TA 4 HOH B 40 340 299 HOH HOH . 
TA 4 HOH B 41 341 332 HOH HOH . 
TA 4 HOH B 42 342 65 HOH HOH . 
TA 4 HOH B 43 343 296 HOH HOH . 
TA 4 HOH B 44 344 154 HOH HOH . 
TA 4 HOH B 45 345 118 HOH HOH . 
UA 4 HOH C 1 301 336 HOH HOH . 
UA 4 HOH C 2 302 33 HOH HOH . 
UA 4 HOH C 3 303 26 HOH HOH . 
UA 4 HOH C 4 304 232 HOH HOH . 
UA 4 HOH C 5 305 17 HOH HOH . 
UA 4 HOH C 6 306 112 HOH HOH . 
UA 4 HOH C 7 307 77 HOH HOH . 
UA 4 HOH C 8 308 349 HOH HOH . 
UA 4 HOH C 9 309 92 HOH HOH . 
UA 4 HOH C 10 310 70 HOH HOH . 
UA 4 HOH C 11 311 337 HOH HOH . 
UA 4 HOH C 12 312 31 HOH HOH . 
UA 4 HOH C 13 313 28 HOH HOH . 
UA 4 HOH C 14 314 166 HOH HOH . 
UA 4 HOH C 15 315 85 HOH HOH . 
UA 4 HOH C 16 316 134 HOH HOH . 
UA 4 HOH C 17 317 14 HOH HOH . 
UA 4 HOH C 18 318 325 HOH HOH . 
UA 4 HOH C 19 319 93 HOH HOH . 
UA 4 HOH C 20 320 18 HOH HOH . 
UA 4 HOH C 21 321 326 HOH HOH . 
UA 4 HOH C 22 322 54 HOH HOH . 
UA 4 HOH C 23 323 133 HOH HOH . 
UA 4 HOH C 24 324 94 HOH HOH . 
UA 4 HOH C 25 325 322 HOH HOH . 
UA 4 HOH C 26 326 45 HOH HOH . 
UA 4 HOH C 27 327 111 HOH HOH . 
UA 4 HOH C 28 328 137 HOH HOH . 
UA 4 HOH C 29 329 32 HOH HOH . 
UA 4 HOH C 30 330 69 HOH HOH . 
UA 4 HOH C 31 331 229 HOH HOH . 
UA 4 HOH C 32 332 182 HOH HOH . 
UA 4 HOH C 33 333 333 HOH HOH . 
UA 4 HOH C 34 334 60 HOH HOH . 
UA 4 HOH C 35 335 327 HOH HOH . 
UA 4 HOH C 36 336 261 HOH HOH . 
UA 4 HOH C 37 337 185 HOH HOH . 
UA 4 HOH C 38 338 186 HOH HOH . 
UA 4 HOH C 39 339 128 HOH HOH . 
UA 4 HOH C 40 340 233 HOH HOH . 
UA 4 HOH C 41 341 183 HOH HOH . 
UA 4 HOH C 42 342 73 HOH HOH . 
UA 4 HOH C 43 343 114 HOH HOH . 
UA 4 HOH C 44 344 141 HOH HOH . 
UA 4 HOH C 45 345 304 HOH HOH . 
VA 4 HOH D 1 301 116 HOH HOH . 
VA 4 HOH D 2 302 204 HOH HOH . 
VA 4 HOH D 3 303 115 HOH HOH . 
VA 4 HOH D 4 304 75 HOH HOH . 
VA 4 HOH D 5 305 19 HOH HOH . 
VA 4 HOH D 6 306 30 HOH HOH . 
VA 4 HOH D 7 307 53 HOH HOH . 
VA 4 HOH D 8 308 108 HOH HOH . 
VA 4 HOH D 9 309 25 HOH HOH . 
VA 4 HOH D 10 310 11 HOH HOH . 
VA 4 HOH D 11 311 224 HOH HOH . 
VA 4 HOH D 12 312 107 HOH HOH . 
VA 4 HOH D 13 313 13 HOH HOH . 
VA 4 HOH D 14 314 90 HOH HOH . 
VA 4 HOH D 15 315 59 HOH HOH . 
VA 4 HOH D 16 316 12 HOH HOH . 
VA 4 HOH D 17 317 51 HOH HOH . 
VA 4 HOH D 18 318 8 HOH HOH . 
VA 4 HOH D 19 319 27 HOH HOH . 
VA 4 HOH D 20 320 58 HOH HOH . 
VA 4 HOH D 21 321 10 HOH HOH . 
VA 4 HOH D 22 322 96 HOH HOH . 
VA 4 HOH D 23 323 97 HOH HOH . 
VA 4 HOH D 24 324 189 HOH HOH . 
VA 4 HOH D 25 325 234 HOH HOH . 
VA 4 HOH D 26 326 334 HOH HOH . 
VA 4 HOH D 27 327 102 HOH HOH . 
VA 4 HOH D 28 328 67 HOH HOH . 
VA 4 HOH D 29 329 276 HOH HOH . 
VA 4 HOH D 30 330 84 HOH HOH . 
VA 4 HOH D 31 331 71 HOH HOH . 
VA 4 HOH D 32 332 55 HOH HOH . 
VA 4 HOH D 33 333 95 HOH HOH . 
VA 4 HOH D 34 334 66 HOH HOH . 
VA 4 HOH D 35 335 345 HOH HOH . 
VA 4 HOH D 36 336 100 HOH HOH . 
VA 4 HOH D 37 337 105 HOH HOH . 
VA 4 HOH D 38 338 346 HOH HOH . 
VA 4 HOH D 39 339 98 HOH HOH . 
VA 4 HOH D 40 340 197 HOH HOH . 
VA 4 HOH D 41 341 201 HOH HOH . 
VA 4 HOH D 42 342 195 HOH HOH . 
VA 4 HOH D 43 343 196 HOH HOH . 
VA 4 HOH D 44 344 202 HOH HOH . 
VA 4 HOH D 45 345 88 HOH HOH . 
WA 4 HOH E 1 1201 323 HOH HOH . 
XA 4 HOH F 1 1101 110 HOH HOH . 
XA 4 HOH F 2 1102 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . V 3 19.263 -29.893 54.79 1 108.95 ? C1 GOL 203 B 1 
HETATM 2 O O1 GOL . . . V 3 18.59 -28.69 55.019 1 101.96 ? O1 GOL 203 B 1 
HETATM 3 C C2 GOL . . . V 3 18.286 -30.829 54.029 1 106.71 ? C2 GOL 203 B 1 
HETATM 4 O O2 GOL . . . V 3 17.852 -30.258 52.845 1 94.04 ? O2 GOL 203 B 1 
HETATM 5 C C3 GOL . . . V 3 19.09 -32.14 53.789 1 111.29 ? C3 GOL 203 B 1 
HETATM 6 O O3 GOL . . . V 3 18.168 -33.151 53.498 1 105.34 ? O3 GOL 203 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#