data_8DOF # _model_server_result.job_id XZjHwPyjfwtQdUdNl0_NOA _model_server_result.datetime_utc '2024-10-20 00:53:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dof # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 8DOF # _exptl.entry_id 8DOF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.479 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2-cyclohexyl-2-[(4-{[5-(propan-2-yl)-1H-pyrazol-3-yl]amino}-1H-pyrazolo[3,4-d]pyrimidin-6-yl)amino]ethan-1-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DOF _cell.length_a 76.21 _cell.length_b 76.21 _cell.length_c 132.68 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DOF _symmetry.cell_setting ? _symmetry.Int_Tables_number 93 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_554 y,x,-z-1/2 0 1 0 1 0 0 0 0 -1 0 0 -66.34 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H28 N8 O' _chem_comp.formula_weight 384.479 _chem_comp.id T4L _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2-cyclohexyl-2-[(4-{[5-(propan-2-yl)-1H-pyrazol-3-yl]amino}-1H-pyrazolo[3,4-d]pyrimidin-6-yl)amino]ethan-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 O28 T4L sing 303 n n C27 C25 T4L sing 304 n n C24 C23 T4L sing 305 n n C24 C20 T4L sing 306 n n C23 C22 T4L sing 307 n n C22 C25 T4L sing 308 n n C22 C21 T4L sing 309 n n C25 N26 T4L sing 310 n n C17 C10 T4L sing 311 n n C19 C20 T4L sing 312 n n C19 C21 T4L sing 313 n n N26 C03 T4L sing 314 n n C10 C18 T4L sing 315 n n C10 C12 T4L sing 316 n n C03 N04 T4L doub 317 n y C03 N02 T4L sing 318 n y N04 C07 T4L sing 319 n y N02 C01 T4L doub 320 n y C13 C12 T4L doub 321 n y C13 C14 T4L sing 322 n y C12 N11 T4L sing 323 n y C07 C06 T4L doub 324 n y C07 N08 T4L sing 325 n y C01 N16 T4L sing 326 n n C01 C06 T4L sing 327 n y N11 N15 T4L sing 328 n y C14 N16 T4L sing 329 n n C14 N15 T4L doub 330 n y C06 C05 T4L sing 331 n y N08 N09 T4L sing 332 n y C05 N09 T4L doub 333 n y C18 H1 T4L sing 334 n n C18 H2 T4L sing 335 n n C18 H3 T4L sing 336 n n C19 H4 T4L sing 337 n n C19 H5 T4L sing 338 n n C20 H6 T4L sing 339 n n C20 H7 T4L sing 340 n n C21 H8 T4L sing 341 n n C21 H9 T4L sing 342 n n C22 H10 T4L sing 343 n n C25 H11 T4L sing 344 n n C27 H12 T4L sing 345 n n C27 H13 T4L sing 346 n n C05 H14 T4L sing 347 n n C10 H15 T4L sing 348 n n C13 H16 T4L sing 349 n n C17 H17 T4L sing 350 n n C17 H18 T4L sing 351 n n C17 H19 T4L sing 352 n n C23 H20 T4L sing 353 n n C23 H21 T4L sing 354 n n C24 H22 T4L sing 355 n n C24 H23 T4L sing 356 n n N08 H24 T4L sing 357 n n N11 H25 T4L sing 358 n n N16 H26 T4L sing 359 n n N26 H27 T4L sing 360 n n O28 H28 T4L sing 361 n n # _atom_sites.entry_id 8DOF _atom_sites.fract_transf_matrix[1][1] 0.013122 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013122 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007537 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 501 1 EDO EDO . C 2 EDO A 1 502 4 EDO EDO . D 2 EDO A 1 503 5 EDO EDO . E 3 T4L A 1 504 11 T4L 716 . F 4 SO4 A 1 505 21 SO4 SO4 . G 4 SO4 A 1 506 1 SO4 SO4 . H 5 HOH A 1 601 24 HOH HOH . H 5 HOH A 2 602 17 HOH HOH . H 5 HOH A 3 603 36 HOH HOH . H 5 HOH A 4 604 35 HOH HOH . H 5 HOH A 5 605 32 HOH HOH . H 5 HOH A 6 606 8 HOH HOH . H 5 HOH A 7 607 1 HOH HOH . H 5 HOH A 8 608 31 HOH HOH . H 5 HOH A 9 609 16 HOH HOH . H 5 HOH A 10 610 9 HOH HOH . H 5 HOH A 11 611 11 HOH HOH . H 5 HOH A 12 612 2 HOH HOH . H 5 HOH A 13 613 22 HOH HOH . H 5 HOH A 14 614 7 HOH HOH . H 5 HOH A 15 615 4 HOH HOH . H 5 HOH A 16 616 23 HOH HOH . H 5 HOH A 17 617 10 HOH HOH . H 5 HOH A 18 618 3 HOH HOH . H 5 HOH A 19 619 14 HOH HOH . H 5 HOH A 20 620 6 HOH HOH . H 5 HOH A 21 621 12 HOH HOH . H 5 HOH A 22 622 28 HOH HOH . H 5 HOH A 23 623 25 HOH HOH . H 5 HOH A 24 624 15 HOH HOH . H 5 HOH A 25 625 38 HOH HOH . H 5 HOH A 26 626 37 HOH HOH . H 5 HOH A 27 627 27 HOH HOH . H 5 HOH A 28 628 18 HOH HOH . H 5 HOH A 29 629 19 HOH HOH . H 5 HOH A 30 630 29 HOH HOH . H 5 HOH A 31 631 30 HOH HOH . H 5 HOH A 32 632 33 HOH HOH . H 5 HOH A 33 633 5 HOH HOH . H 5 HOH A 34 634 34 HOH HOH . H 5 HOH A 35 635 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 T4L . . . E 3 10.844 13.531 -27.828 1 61.81 ? C12 T4L 504 A 1 HETATM 2 C C18 T4L . . . E 3 9.465 11.547 -28.383 1 60.42 ? C18 T4L 504 A 1 HETATM 3 C C19 T4L . . . E 3 18.527 14.152 -29.96 1 61.21 ? C19 T4L 504 A 1 HETATM 4 C C20 T4L . . . E 3 19.43 15.402 -29.932 1 63.02 ? C20 T4L 504 A 1 HETATM 5 C C21 T4L . . . E 3 17.04 14.523 -29.775 1 62.62 ? C21 T4L 504 A 1 HETATM 6 C C22 T4L . . . E 3 16.504 15.553 -30.805 1 67.36 ? C22 T4L 504 A 1 HETATM 7 C C25 T4L . . . E 3 15.041 15.966 -30.451 1 64.91 ? C25 T4L 504 A 1 HETATM 8 C C27 T4L . . . E 3 14.012 15.825 -31.612 1 65.14 ? C27 T4L 504 A 1 HETATM 9 C C01 T4L . . . E 3 13.707 16.787 -26.744 1 55.11 ? C01 T4L 504 A 1 HETATM 10 C C03 T4L . . . E 3 14.794 17.558 -28.655 1 57.68 ? C03 T4L 504 A 1 HETATM 11 C C05 T4L . . . E 3 14.39 18.338 -24.695 1 50.19 ? C05 T4L 504 A 1 HETATM 12 C C06 T4L . . . E 3 14.333 17.829 -26.027 1 52.3 ? C06 T4L 504 A 1 HETATM 13 C C07 T4L . . . E 3 15.178 18.676 -26.771 1 53.75 ? C07 T4L 504 A 1 HETATM 14 C C10 T4L . . . E 3 10.143 12.813 -28.956 1 60.51 ? C10 T4L 504 A 1 HETATM 15 C C13 T4L . . . E 3 11.672 14.629 -27.849 1 59.05 ? C13 T4L 504 A 1 HETATM 16 C C14 T4L . . . E 3 12.041 14.857 -26.48 1 56.95 ? C14 T4L 504 A 1 HETATM 17 C C17 T4L . . . E 3 11.109 12.47 -30.106 1 60 ? C17 T4L 504 A 1 HETATM 18 C C23 T4L . . . E 3 17.482 16.761 -30.895 1 68.45 ? C23 T4L 504 A 1 HETATM 19 C C24 T4L . . . E 3 18.975 16.369 -31.054 1 68.9 ? C24 T4L 504 A 1 HETATM 20 N N02 T4L . . . E 3 13.952 16.678 -28.041 1 58.27 ? N02 T4L 504 A 1 HETATM 21 N N04 T4L . . . E 3 15.436 18.578 -28.077 1 55.02 ? N04 T4L 504 A 1 HETATM 22 N N08 T4L . . . E 3 15.673 19.583 -25.902 1 52.29 ? N08 T4L 504 A 1 HETATM 23 N N09 T4L . . . E 3 15.18 19.367 -24.606 1 49.11 ? N09 T4L 504 A 1 HETATM 24 N N11 T4L . . . E 3 10.72 13.148 -26.525 1 59.86 ? N11 T4L 504 A 1 HETATM 25 N N15 T4L . . . E 3 11.472 13.972 -25.676 1 56.23 ? N15 T4L 504 A 1 HETATM 26 N N16 T4L . . . E 3 12.875 15.916 -26.084 1 55.43 ? N16 T4L 504 A 1 HETATM 27 N N26 T4L . . . E 3 14.968 17.346 -29.954 1 60.91 ? N26 T4L 504 A 1 HETATM 28 O O28 T4L . . . E 3 12.925 14.961 -31.229 1 65.24 ? O28 T4L 504 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #