data_8DOH # _model_server_result.job_id igwFx0R7Y26NpTLCu5ghnQ _model_server_result.datetime_utc '2024-11-14 22:42:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8doh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 8DOH # _exptl.entry_id 8DOH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.233 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,4'-methylenediphenol" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DOH _cell.length_a 59.672 _cell.length_b 67.281 _cell.length_c 67.704 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DOH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,L 1 1 B,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc2 B NE2 HIS 89 B HIS 89 1_555 I FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc3 I FE HEM . B HEM 201 1_555 M O HOH . B HOH 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? # _chem_comp.formula 'C13 H12 O2' _chem_comp.formula_weight 200.233 _chem_comp.id T0U _chem_comp.mon_nstd_flag . _chem_comp.name "4,4'-methylenediphenol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Bisphenol F' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C11 T0U sing 389 n n C11 C12 T0U doub 390 n y C11 C10 T0U sing 391 n y C12 C13 T0U sing 392 n y C10 C9 T0U doub 393 n y C13 C8 T0U doub 394 n y C9 C8 T0U sing 395 n y C8 C7 T0U sing 396 n n C7 C6 T0U sing 397 n n C5 C6 T0U doub 398 n y C5 C4 T0U sing 399 n y C6 C1 T0U sing 400 n y C4 C3 T0U doub 401 n y C1 C2 T0U doub 402 n y C3 C2 T0U sing 403 n y C3 O2 T0U sing 404 n n C1 H1 T0U sing 405 n n C2 H2 T0U sing 406 n n C4 H3 T0U sing 407 n n C5 H4 T0U sing 408 n n O1 H5 T0U sing 409 n n C7 H6 T0U sing 410 n n C7 H7 T0U sing 411 n n C9 H8 T0U sing 412 n n C10 H9 T0U sing 413 n n C12 H10 T0U sing 414 n n C13 H11 T0U sing 415 n n O2 H12 T0U sing 416 n n # _atom_sites.entry_id 8DOH _atom_sites.fract_transf_matrix[1][1] 0.016758 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014863 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01477 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 139 HEM HEM . D 3 T0U A 1 202 140 T0U BPF . E 4 GOL A 1 203 141 GOL GOL . F 5 SO4 A 1 204 1 SO4 SO4 . G 5 SO4 A 1 205 2 SO4 SO4 . H 5 SO4 A 1 206 3 SO4 SO4 . I 2 HEM B 1 201 139 HEM HEM . J 3 T0U B 1 202 140 T0U BPF . K 4 GOL B 1 203 141 GOL GOL . L 6 HOH A 1 301 131 HOH HOH . L 6 HOH A 2 302 189 HOH HOH . L 6 HOH A 3 303 31 HOH HOH . L 6 HOH A 4 304 78 HOH HOH . L 6 HOH A 5 305 149 HOH HOH . L 6 HOH A 6 306 56 HOH HOH . L 6 HOH A 7 307 188 HOH HOH . L 6 HOH A 8 308 51 HOH HOH . L 6 HOH A 9 309 138 HOH HOH . L 6 HOH A 10 310 120 HOH HOH . L 6 HOH A 11 311 85 HOH HOH . L 6 HOH A 12 312 94 HOH HOH . L 6 HOH A 13 313 24 HOH HOH . L 6 HOH A 14 314 192 HOH HOH . L 6 HOH A 15 315 83 HOH HOH . L 6 HOH A 16 316 93 HOH HOH . L 6 HOH A 17 317 26 HOH HOH . L 6 HOH A 18 318 58 HOH HOH . L 6 HOH A 19 319 41 HOH HOH . L 6 HOH A 20 320 107 HOH HOH . L 6 HOH A 21 321 52 HOH HOH . L 6 HOH A 22 322 28 HOH HOH . L 6 HOH A 23 323 7 HOH HOH . L 6 HOH A 24 324 111 HOH HOH . L 6 HOH A 25 325 13 HOH HOH . L 6 HOH A 26 326 128 HOH HOH . L 6 HOH A 27 327 34 HOH HOH . L 6 HOH A 28 328 113 HOH HOH . L 6 HOH A 29 329 1 HOH HOH . L 6 HOH A 30 330 64 HOH HOH . L 6 HOH A 31 331 135 HOH HOH . L 6 HOH A 32 332 42 HOH HOH . L 6 HOH A 33 333 10 HOH HOH . L 6 HOH A 34 334 22 HOH HOH . L 6 HOH A 35 335 21 HOH HOH . L 6 HOH A 36 336 2 HOH HOH . L 6 HOH A 37 337 82 HOH HOH . L 6 HOH A 38 338 43 HOH HOH . L 6 HOH A 39 339 132 HOH HOH . L 6 HOH A 40 340 68 HOH HOH . L 6 HOH A 41 341 69 HOH HOH . L 6 HOH A 42 342 190 HOH HOH . L 6 HOH A 43 343 17 HOH HOH . L 6 HOH A 44 344 92 HOH HOH . L 6 HOH A 45 345 27 HOH HOH . L 6 HOH A 46 346 141 HOH HOH . L 6 HOH A 47 347 134 HOH HOH . L 6 HOH A 48 348 151 HOH HOH . L 6 HOH A 49 349 153 HOH HOH . L 6 HOH A 50 350 25 HOH HOH . L 6 HOH A 51 351 62 HOH HOH . L 6 HOH A 52 352 39 HOH HOH . L 6 HOH A 53 353 115 HOH HOH . L 6 HOH A 54 354 40 HOH HOH . L 6 HOH A 55 355 105 HOH HOH . L 6 HOH A 56 356 99 HOH HOH . L 6 HOH A 57 357 15 HOH HOH . L 6 HOH A 58 358 8 HOH HOH . L 6 HOH A 59 359 50 HOH HOH . L 6 HOH A 60 360 49 HOH HOH . L 6 HOH A 61 361 165 HOH HOH . L 6 HOH A 62 362 175 HOH HOH . L 6 HOH A 63 363 116 HOH HOH . L 6 HOH A 64 364 171 HOH HOH . L 6 HOH A 65 365 53 HOH HOH . L 6 HOH A 66 366 198 HOH HOH . L 6 HOH A 67 367 36 HOH HOH . L 6 HOH A 68 368 182 HOH HOH . L 6 HOH A 69 369 162 HOH HOH . L 6 HOH A 70 370 118 HOH HOH . L 6 HOH A 71 371 30 HOH HOH . L 6 HOH A 72 372 195 HOH HOH . L 6 HOH A 73 373 156 HOH HOH . L 6 HOH A 74 374 117 HOH HOH . L 6 HOH A 75 375 193 HOH HOH . L 6 HOH A 76 376 3 HOH HOH . L 6 HOH A 77 377 122 HOH HOH . L 6 HOH A 78 378 158 HOH HOH . L 6 HOH A 79 379 154 HOH HOH . L 6 HOH A 80 380 127 HOH HOH . M 6 HOH B 1 301 184 HOH HOH . M 6 HOH B 2 302 185 HOH HOH . M 6 HOH B 3 303 106 HOH HOH . M 6 HOH B 4 304 81 HOH HOH . M 6 HOH B 5 305 148 HOH HOH . M 6 HOH B 6 306 178 HOH HOH . M 6 HOH B 7 307 124 HOH HOH . M 6 HOH B 8 308 168 HOH HOH . M 6 HOH B 9 309 100 HOH HOH . M 6 HOH B 10 310 191 HOH HOH . M 6 HOH B 11 311 186 HOH HOH . M 6 HOH B 12 312 114 HOH HOH . M 6 HOH B 13 313 44 HOH HOH . M 6 HOH B 14 314 197 HOH HOH . M 6 HOH B 15 315 63 HOH HOH . M 6 HOH B 16 316 180 HOH HOH . M 6 HOH B 17 317 194 HOH HOH . M 6 HOH B 18 318 9 HOH HOH . M 6 HOH B 19 319 169 HOH HOH . M 6 HOH B 20 320 130 HOH HOH . M 6 HOH B 21 321 110 HOH HOH . M 6 HOH B 22 322 121 HOH HOH . M 6 HOH B 23 323 108 HOH HOH . M 6 HOH B 24 324 137 HOH HOH . M 6 HOH B 25 325 177 HOH HOH . M 6 HOH B 26 326 86 HOH HOH . M 6 HOH B 27 327 4 HOH HOH . M 6 HOH B 28 328 75 HOH HOH . M 6 HOH B 29 329 125 HOH HOH . M 6 HOH B 30 330 77 HOH HOH . M 6 HOH B 31 331 87 HOH HOH . M 6 HOH B 32 332 101 HOH HOH . M 6 HOH B 33 333 61 HOH HOH . M 6 HOH B 34 334 54 HOH HOH . M 6 HOH B 35 335 67 HOH HOH . M 6 HOH B 36 336 109 HOH HOH . M 6 HOH B 37 337 70 HOH HOH . M 6 HOH B 38 338 136 HOH HOH . M 6 HOH B 39 339 160 HOH HOH . M 6 HOH B 40 340 59 HOH HOH . M 6 HOH B 41 341 72 HOH HOH . M 6 HOH B 42 342 119 HOH HOH . M 6 HOH B 43 343 73 HOH HOH . M 6 HOH B 44 344 145 HOH HOH . M 6 HOH B 45 345 181 HOH HOH . M 6 HOH B 46 346 12 HOH HOH . M 6 HOH B 47 347 179 HOH HOH . M 6 HOH B 48 348 14 HOH HOH . M 6 HOH B 49 349 95 HOH HOH . M 6 HOH B 50 350 5 HOH HOH . M 6 HOH B 51 351 97 HOH HOH . M 6 HOH B 52 352 143 HOH HOH . M 6 HOH B 53 353 18 HOH HOH . M 6 HOH B 54 354 32 HOH HOH . M 6 HOH B 55 355 123 HOH HOH . M 6 HOH B 56 356 38 HOH HOH . M 6 HOH B 57 357 65 HOH HOH . M 6 HOH B 58 358 60 HOH HOH . M 6 HOH B 59 359 126 HOH HOH . M 6 HOH B 60 360 112 HOH HOH . M 6 HOH B 61 361 104 HOH HOH . M 6 HOH B 62 362 139 HOH HOH . M 6 HOH B 63 363 29 HOH HOH . M 6 HOH B 64 364 84 HOH HOH . M 6 HOH B 65 365 90 HOH HOH . M 6 HOH B 66 366 176 HOH HOH . M 6 HOH B 67 367 57 HOH HOH . M 6 HOH B 68 368 79 HOH HOH . M 6 HOH B 69 369 89 HOH HOH . M 6 HOH B 70 370 33 HOH HOH . M 6 HOH B 71 371 96 HOH HOH . M 6 HOH B 72 372 20 HOH HOH . M 6 HOH B 73 373 142 HOH HOH . M 6 HOH B 74 374 16 HOH HOH . M 6 HOH B 75 375 76 HOH HOH . M 6 HOH B 76 376 35 HOH HOH . M 6 HOH B 77 377 155 HOH HOH . M 6 HOH B 78 378 45 HOH HOH . M 6 HOH B 79 379 47 HOH HOH . M 6 HOH B 80 380 37 HOH HOH . M 6 HOH B 81 381 146 HOH HOH . M 6 HOH B 82 382 102 HOH HOH . M 6 HOH B 83 383 71 HOH HOH . M 6 HOH B 84 384 46 HOH HOH . M 6 HOH B 85 385 152 HOH HOH . M 6 HOH B 86 386 163 HOH HOH . M 6 HOH B 87 387 129 HOH HOH . M 6 HOH B 88 388 74 HOH HOH . M 6 HOH B 89 389 88 HOH HOH . M 6 HOH B 90 390 147 HOH HOH . M 6 HOH B 91 391 196 HOH HOH . M 6 HOH B 92 392 66 HOH HOH . M 6 HOH B 93 393 19 HOH HOH . M 6 HOH B 94 394 55 HOH HOH . M 6 HOH B 95 395 183 HOH HOH . M 6 HOH B 96 396 144 HOH HOH . M 6 HOH B 97 397 98 HOH HOH . M 6 HOH B 98 398 133 HOH HOH . M 6 HOH B 99 399 23 HOH HOH . M 6 HOH B 100 400 161 HOH HOH . M 6 HOH B 101 401 159 HOH HOH . M 6 HOH B 102 402 157 HOH HOH . M 6 HOH B 103 403 91 HOH HOH . M 6 HOH B 104 404 48 HOH HOH . M 6 HOH B 105 405 150 HOH HOH . M 6 HOH B 106 406 80 HOH HOH . M 6 HOH B 107 407 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 T0U . A . D 3 6.053 -0.861 18.041 0.4 13.88 0 C1 T0U 202 A 1 HETATM 2 C C1 T0U . B . D 3 7.84 -1.927 16.449 0.5 63.55 0 C1 T0U 202 A 1 HETATM 3 C C2 T0U . A . D 3 5.294 -0.238 19.02 0.4 13.8 0 C2 T0U 202 A 1 HETATM 4 C C2 T0U . B . D 3 7.831 -1.085 17.55 0.5 66.51 0 C2 T0U 202 A 1 HETATM 5 C C3 T0U . A . D 3 3.996 0.148 18.745 0.4 13.39 0 C3 T0U 202 A 1 HETATM 6 C C3 T0U . B . D 3 6.668 -0.416 17.903 0.5 67.03 0 C3 T0U 202 A 1 HETATM 7 C C4 T0U . A . D 3 3.482 -0.051 17.477 0.4 13.47 0 C4 T0U 202 A 1 HETATM 8 C C4 T0U . B . D 3 5.529 -0.583 17.143 0.5 68.41 0 C4 T0U 202 A 1 HETATM 9 C C5 T0U . A . D 3 4.253 -0.675 16.506 0.4 13.43 0 C5 T0U 202 A 1 HETATM 10 C C5 T0U . B . D 3 5.556 -1.424 16.047 0.5 66.71 0 C5 T0U 202 A 1 HETATM 11 C C6 T0U . A . D 3 5.552 -1.094 16.767 0.4 13.85 0 C6 T0U 202 A 1 HETATM 12 C C6 T0U . B . D 3 6.694 -2.135 15.701 0.5 62.72 0 C6 T0U 202 A 1 HETATM 13 O O1 T0U . A . D 3 4.831 -0.714 10.347 0.4 13.7 0 O1 T0U 202 A 1 HETATM 14 O O1 T0U . B . D 3 3.902 0.35 10.822 0.5 57.91 0 O1 T0U 202 A 1 HETATM 15 C C7 T0U . A . D 3 6.391 -1.79 15.708 0.4 14.34 0 C7 T0U 202 A 1 HETATM 16 C C7 T0U . B . D 3 6.671 -3.001 14.467 0.5 57.72 0 C7 T0U 202 A 1 HETATM 17 C C8 T0U . A . D 3 5.97 -1.518 14.278 0.4 14.36 0 C8 T0U 202 A 1 HETATM 18 C C8 T0U . B . D 3 5.931 -2.143 13.466 0.5 60.01 0 C8 T0U 202 A 1 HETATM 19 C C9 T0U . A . D 3 5.408 -0.307 13.919 0.4 14.75 0 C9 T0U 202 A 1 HETATM 20 C C9 T0U . B . D 3 5.705 -0.804 13.753 0.5 59.27 0 C9 T0U 202 A 1 HETATM 21 C C10 T0U . A . D 3 5.03 -0.034 12.614 0.4 14.55 0 C10 T0U 202 A 1 HETATM 22 C C10 T0U . B . D 3 5.03 0.027 12.877 0.5 58.78 0 C10 T0U 202 A 1 HETATM 23 C C11 T0U . A . D 3 5.198 -0.992 11.63 0.4 15.12 0 C11 T0U 202 A 1 HETATM 24 C C11 T0U . B . D 3 4.563 -0.478 11.681 0.5 60.02 0 C11 T0U 202 A 1 HETATM 25 C C12 T0U . A . D 3 5.723 -2.228 11.971 0.4 15.46 0 C12 T0U 202 A 1 HETATM 26 C C12 T0U . B . D 3 4.77 -1.813 11.376 0.5 59.63 0 C12 T0U 202 A 1 HETATM 27 C C13 T0U . A . D 3 6.104 -2.477 13.284 0.4 15 0 C13 T0U 202 A 1 HETATM 28 C C13 T0U . B . D 3 5.438 -2.636 12.268 0.5 60.35 0 C13 T0U 202 A 1 HETATM 29 O O2 T0U . A . D 3 3.254 0.777 19.7 0.4 13.5 0 O2 T0U 202 A 1 HETATM 30 O O2 T0U . B . D 3 6.595 0.437 18.967 0.5 65.79 0 O2 T0U 202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #