data_8DOI # _model_server_result.job_id Wiy1xfmJrqp2I7Qv7CvL9Q _model_server_result.datetime_utc '2024-11-24 02:02:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8doi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":203}' # _entry.id 8DOI # _exptl.entry_id 8DOI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 186.207 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(2-hydroxyphenyl)phenol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DOI _cell.length_a 59.239 _cell.length_b 67.702 _cell.length_c 68.038 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DOI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,V 1 1 B,O,P,Q,R,S,T,U,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc2 B NE2 HIS 89 B HIS 89 1_555 P FE HEM . B HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc3 P FE HEM . B HEM 202 1_555 Q O14 5VL . B 5VL 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.769 ? metalc ? metalc4 P FE HEM . B HEM 202 1_555 W O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? # _chem_comp.formula 'C12 H10 O2' _chem_comp.formula_weight 186.207 _chem_comp.id 5VL _chem_comp.mon_nstd_flag . _chem_comp.name 2-(2-hydroxyphenyl)phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C4 5VL doub 1 n y C3 C2 5VL sing 2 n y O1 C2 5VL sing 3 n n C4 C5 5VL sing 4 n y C2 C7 5VL doub 5 n y C5 C6 5VL doub 6 n y C7 C6 5VL sing 7 n y C7 C8 5VL sing 8 n n C9 C8 5VL doub 9 n y C9 C10 5VL sing 10 n y C8 C13 5VL sing 11 n y C10 C11 5VL doub 12 n y C13 O14 5VL sing 13 n n C13 C12 5VL doub 14 n y C11 C12 5VL sing 15 n y C4 H1 5VL sing 16 n n C5 H2 5VL sing 17 n n C6 H3 5VL sing 18 n n C10 H4 5VL sing 19 n n O1 H5 5VL sing 20 n n C3 H6 5VL sing 21 n n C9 H7 5VL sing 22 n n C11 H8 5VL sing 23 n n C12 H9 5VL sing 24 n n O14 H10 5VL sing 25 n n # _atom_sites.entry_id 8DOI _atom_sites.fract_transf_matrix[1][1] 0.016881 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014698 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 139 HEM HEM . D 3 5VL A 1 202 140 5VL 2BP . E 4 GOL A 1 203 141 GOL GOL . F 4 GOL A 1 204 142 GOL GOL . G 4 GOL A 1 205 143 GOL GOL . H 4 GOL A 1 206 144 GOL GOL . I 4 GOL A 1 207 145 GOL GOL . J 5 DMS A 1 208 146 DMS DMS . K 6 PEG A 1 209 148 PEG PEG . L 4 GOL A 1 210 142 GOL GOL . M 7 SO4 A 1 211 1 SO4 SO4 . N 7 SO4 A 1 212 2 SO4 SO4 . O 4 GOL B 1 201 147 GOL GOL . P 2 HEM B 1 202 139 HEM HEM . Q 3 5VL B 1 203 140 5VL 2BP . R 4 GOL B 1 204 141 GOL GOL . S 4 GOL B 1 205 143 GOL GOL . T 4 GOL B 1 206 144 GOL GOL . U 5 DMS B 1 207 145 DMS DMS . V 8 HOH A 1 301 150 HOH HOH . V 8 HOH A 2 302 145 HOH HOH . V 8 HOH A 3 303 119 HOH HOH . V 8 HOH A 4 304 111 HOH HOH . V 8 HOH A 5 305 135 HOH HOH . V 8 HOH A 6 306 124 HOH HOH . V 8 HOH A 7 307 120 HOH HOH . V 8 HOH A 8 308 103 HOH HOH . V 8 HOH A 9 309 146 HOH HOH . V 8 HOH A 10 310 41 HOH HOH . V 8 HOH A 11 311 101 HOH HOH . V 8 HOH A 12 312 43 HOH HOH . V 8 HOH A 13 313 37 HOH HOH . V 8 HOH A 14 314 87 HOH HOH . V 8 HOH A 15 315 10 HOH HOH . V 8 HOH A 16 316 63 HOH HOH . V 8 HOH A 17 317 17 HOH HOH . V 8 HOH A 18 318 30 HOH HOH . V 8 HOH A 19 319 14 HOH HOH . V 8 HOH A 20 320 38 HOH HOH . V 8 HOH A 21 321 86 HOH HOH . V 8 HOH A 22 322 54 HOH HOH . V 8 HOH A 23 323 16 HOH HOH . V 8 HOH A 24 324 133 HOH HOH . V 8 HOH A 25 325 7 HOH HOH . V 8 HOH A 26 326 140 HOH HOH . V 8 HOH A 27 327 100 HOH HOH . V 8 HOH A 28 328 73 HOH HOH . V 8 HOH A 29 329 76 HOH HOH . V 8 HOH A 30 330 89 HOH HOH . V 8 HOH A 31 331 148 HOH HOH . V 8 HOH A 32 332 28 HOH HOH . V 8 HOH A 33 333 57 HOH HOH . V 8 HOH A 34 334 15 HOH HOH . V 8 HOH A 35 335 23 HOH HOH . V 8 HOH A 36 336 8 HOH HOH . V 8 HOH A 37 337 5 HOH HOH . V 8 HOH A 38 338 48 HOH HOH . V 8 HOH A 39 339 36 HOH HOH . V 8 HOH A 40 340 102 HOH HOH . V 8 HOH A 41 341 132 HOH HOH . V 8 HOH A 42 342 112 HOH HOH . V 8 HOH A 43 343 62 HOH HOH . V 8 HOH A 44 344 46 HOH HOH . V 8 HOH A 45 345 125 HOH HOH . V 8 HOH A 46 346 61 HOH HOH . V 8 HOH A 47 347 49 HOH HOH . V 8 HOH A 48 348 45 HOH HOH . V 8 HOH A 49 349 29 HOH HOH . V 8 HOH A 50 350 34 HOH HOH . V 8 HOH A 51 351 58 HOH HOH . V 8 HOH A 52 352 129 HOH HOH . V 8 HOH A 53 353 9 HOH HOH . V 8 HOH A 54 354 137 HOH HOH . V 8 HOH A 55 355 110 HOH HOH . V 8 HOH A 56 356 99 HOH HOH . V 8 HOH A 57 357 147 HOH HOH . V 8 HOH A 58 358 13 HOH HOH . V 8 HOH A 59 359 80 HOH HOH . V 8 HOH A 60 360 93 HOH HOH . V 8 HOH A 61 361 117 HOH HOH . V 8 HOH A 62 362 122 HOH HOH . V 8 HOH A 63 363 108 HOH HOH . V 8 HOH A 64 364 116 HOH HOH . V 8 HOH A 65 365 139 HOH HOH . V 8 HOH A 66 366 127 HOH HOH . V 8 HOH A 67 367 104 HOH HOH . W 8 HOH B 1 301 151 HOH HOH . W 8 HOH B 2 302 55 HOH HOH . W 8 HOH B 3 303 106 HOH HOH . W 8 HOH B 4 304 83 HOH HOH . W 8 HOH B 5 305 149 HOH HOH . W 8 HOH B 6 306 82 HOH HOH . W 8 HOH B 7 307 40 HOH HOH . W 8 HOH B 8 308 115 HOH HOH . W 8 HOH B 9 309 130 HOH HOH . W 8 HOH B 10 310 71 HOH HOH . W 8 HOH B 11 311 6 HOH HOH . W 8 HOH B 12 312 44 HOH HOH . W 8 HOH B 13 313 69 HOH HOH . W 8 HOH B 14 314 59 HOH HOH . W 8 HOH B 15 315 19 HOH HOH . W 8 HOH B 16 316 60 HOH HOH . W 8 HOH B 17 317 92 HOH HOH . W 8 HOH B 18 318 24 HOH HOH . W 8 HOH B 19 319 66 HOH HOH . W 8 HOH B 20 320 3 HOH HOH . W 8 HOH B 21 321 18 HOH HOH . W 8 HOH B 22 322 94 HOH HOH . W 8 HOH B 23 323 31 HOH HOH . W 8 HOH B 24 324 134 HOH HOH . W 8 HOH B 25 325 32 HOH HOH . W 8 HOH B 26 326 72 HOH HOH . W 8 HOH B 27 327 65 HOH HOH . W 8 HOH B 28 328 50 HOH HOH . W 8 HOH B 29 329 2 HOH HOH . W 8 HOH B 30 330 26 HOH HOH . W 8 HOH B 31 331 64 HOH HOH . W 8 HOH B 32 332 70 HOH HOH . W 8 HOH B 33 333 118 HOH HOH . W 8 HOH B 34 334 75 HOH HOH . W 8 HOH B 35 335 68 HOH HOH . W 8 HOH B 36 336 96 HOH HOH . W 8 HOH B 37 337 88 HOH HOH . W 8 HOH B 38 338 20 HOH HOH . W 8 HOH B 39 339 21 HOH HOH . W 8 HOH B 40 340 81 HOH HOH . W 8 HOH B 41 341 78 HOH HOH . W 8 HOH B 42 342 12 HOH HOH . W 8 HOH B 43 343 136 HOH HOH . W 8 HOH B 44 344 138 HOH HOH . W 8 HOH B 45 345 47 HOH HOH . W 8 HOH B 46 346 35 HOH HOH . W 8 HOH B 47 347 84 HOH HOH . W 8 HOH B 48 348 77 HOH HOH . W 8 HOH B 49 349 4 HOH HOH . W 8 HOH B 50 350 51 HOH HOH . W 8 HOH B 51 351 143 HOH HOH . W 8 HOH B 52 352 27 HOH HOH . W 8 HOH B 53 353 1 HOH HOH . W 8 HOH B 54 354 67 HOH HOH . W 8 HOH B 55 355 141 HOH HOH . W 8 HOH B 56 356 52 HOH HOH . W 8 HOH B 57 357 98 HOH HOH . W 8 HOH B 58 358 79 HOH HOH . W 8 HOH B 59 359 25 HOH HOH . W 8 HOH B 60 360 95 HOH HOH . W 8 HOH B 61 361 22 HOH HOH . W 8 HOH B 62 362 126 HOH HOH . W 8 HOH B 63 363 142 HOH HOH . W 8 HOH B 64 364 39 HOH HOH . W 8 HOH B 65 365 56 HOH HOH . W 8 HOH B 66 366 144 HOH HOH . W 8 HOH B 67 367 91 HOH HOH . W 8 HOH B 68 368 107 HOH HOH . W 8 HOH B 69 369 74 HOH HOH . W 8 HOH B 70 370 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 5VL . A . Q 3 -34.82 -2.128 23.402 0.8 76.84 0 C4 5VL 203 B 1 HETATM 2 C C5 5VL . A . Q 3 -34.911 -3.178 22.528 0.8 74.31 0 C5 5VL 203 B 1 HETATM 3 C C6 5VL . A . Q 3 -35.288 -2.948 21.22 0.8 76.38 0 C6 5VL 203 B 1 HETATM 4 C C7 5VL . A . Q 3 -35.585 -1.664 20.748 0.8 77.1 0 C7 5VL 203 B 1 HETATM 5 C C8 5VL . A . Q 3 -35.964 -1.457 19.324 0.8 76.84 0 C8 5VL 203 B 1 HETATM 6 C C10 5VL . A . Q 3 -35.56 -0.353 17.2 0.8 84.71 0 C10 5VL 203 B 1 HETATM 7 C C13 5VL . A . Q 3 -36.965 -2.195 18.681 0.8 70.99 0 C13 5VL 203 B 1 HETATM 8 O O1 5VL . A . Q 3 -35.712 0.666 21.253 0.8 82.97 0 O1 5VL 203 B 1 HETATM 9 C C2 5VL . A . Q 3 -35.458 -0.615 21.662 0.8 80.23 0 C2 5VL 203 B 1 HETATM 10 C C3 5VL . A . Q 3 -35.09 -0.849 22.975 0.8 82.19 0 C3 5VL 203 B 1 HETATM 11 C C9 5VL . A . Q 3 -35.264 -0.536 18.537 0.8 81.21 0 C9 5VL 203 B 1 HETATM 12 C C11 5VL . A . Q 3 -36.579 -1.082 16.611 0.8 82.98 0 C11 5VL 203 B 1 HETATM 13 C C12 5VL . A . Q 3 -37.284 -1.999 17.35 0.8 77.9 0 C12 5VL 203 B 1 HETATM 14 O O14 5VL . A . Q 3 -37.663 -3.117 19.392 0.8 72.31 0 O14 5VL 203 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #