data_8DOT # _model_server_result.job_id OttHxMbV2JUCE9bzIc5EOg _model_server_result.datetime_utc '2024-12-26 17:23:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dot # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8DOT # _exptl.entry_id 8DOT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DOT _cell.length_a 79.05 _cell.length_b 79.05 _cell.length_c 109.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DOT _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 222 n n O1 HO1 PG4 sing 223 n n C1 C2 PG4 sing 224 n n C1 H11 PG4 sing 225 n n C1 H12 PG4 sing 226 n n C2 O2 PG4 sing 227 n n C2 H21 PG4 sing 228 n n C2 H22 PG4 sing 229 n n O2 C3 PG4 sing 230 n n C3 C4 PG4 sing 231 n n C3 H31 PG4 sing 232 n n C3 H32 PG4 sing 233 n n C4 O3 PG4 sing 234 n n C4 H41 PG4 sing 235 n n C4 H42 PG4 sing 236 n n O3 C5 PG4 sing 237 n n C5 C6 PG4 sing 238 n n C5 H51 PG4 sing 239 n n C5 H52 PG4 sing 240 n n C6 O4 PG4 sing 241 n n C6 H61 PG4 sing 242 n n C6 H62 PG4 sing 243 n n O4 C7 PG4 sing 244 n n C7 C8 PG4 sing 245 n n C7 H71 PG4 sing 246 n n C7 H72 PG4 sing 247 n n C8 O5 PG4 sing 248 n n C8 H81 PG4 sing 249 n n C8 H82 PG4 sing 250 n n O5 HO5 PG4 sing 251 n n # _atom_sites.entry_id 8DOT _atom_sites.fract_transf_matrix[1][1] 0.01265 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01265 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009166 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id PG4 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 274 _pdbx_nonpoly_scheme.pdb_mon_id PG4 _pdbx_nonpoly_scheme.auth_mon_id PG4 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . B 2 11.098 3.62 8.256 1 59.85 ? O1 PG4 501 A 1 HETATM 2 C C1 PG4 . . . B 2 11.589 4.651 7.392 1 63.79 ? C1 PG4 501 A 1 HETATM 3 C C2 PG4 . . . B 2 12.368 4.06 6.225 1 78.26 ? C2 PG4 501 A 1 HETATM 4 O O2 PG4 . . . B 2 12.723 5.029 5.215 1 69.45 ? O2 PG4 501 A 1 HETATM 5 C C3 PG4 . . . B 2 13.396 4.471 4.073 1 60.42 ? C3 PG4 501 A 1 HETATM 6 C C4 PG4 . . . B 2 14.863 4.807 4.073 1 64.57 ? C4 PG4 501 A 1 HETATM 7 O O3 PG4 . . . B 2 15.568 4.369 2.887 1 68 ? O3 PG4 501 A 1 HETATM 8 C C5 PG4 . . . B 2 16.698 5.226 2.667 1 63.2 ? C5 PG4 501 A 1 HETATM 9 C C6 PG4 . . . B 2 17.553 4.788 1.519 1 64.15 ? C6 PG4 501 A 1 HETATM 10 O O4 PG4 . . . B 2 17.131 5.358 0.267 1 76.59 ? O4 PG4 501 A 1 HETATM 11 C C7 PG4 . . . B 2 17.058 4.331 -0.73 1 75.62 ? C7 PG4 501 A 1 HETATM 12 C C8 PG4 . . . B 2 16.53 4.814 -2.058 1 68.75 ? C8 PG4 501 A 1 HETATM 13 O O5 PG4 . . . B 2 16.54 3.792 -3.062 1 62.47 ? O5 PG4 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #