data_8DOV
#
_model_server_result.job_id            L7-aMDFZ2wgBb_pqT0XM7A 
_model_server_result.datetime_utc      '2024-11-22 19:22:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dov 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":202}' 
#
_entry.id    8DOV 
#
_exptl.entry_id    8DOV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.9 
_cell.angle_gamma         90 
_cell.entry_id            8DOV 
_cell.length_a            216.76 
_cell.length_b            116.45 
_cell.length_c            70.88 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DOV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? hexameric 6 author_defined_assembly 1 
? pentameric 5 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,J,K,L,M,N,O,P,Q,V,W,X,Y,Z,FA,GA 1 1 
E,F,G,H,I,R,S,T,U,AA,BA,CA,DA,EA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 N N N 
? 5 Q N N 
? 5 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 L FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc2 B NE2 HIS 92 B HIS 92 1_555 M FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc3 C NE2 HIS 87 C HIS 87 1_555 O FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc4 O FE HEM . C HEM 201 1_555 Y O HOH . C HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? 
metalc ? metalc5 D NE2 HIS 92 D HIS 92 1_555 P FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc6 E NE2 HIS 87 E HIS 87 1_555 R FE HEM . E HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc7 R FE HEM . E HEM 201 1_555 AA O HOH . E HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc8 F NE2 HIS 92 F HIS 92 1_555 S FE HEM . F HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc9 G NE2 HIS 87 G HIS 87 1_555 T FE HEM . G HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc10 H NE2 HIS 92 H HIS 92 1_555 U FE HEM . H HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc11 U FE HEM . H HEM 201 1_555 DA O HOH . H HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8DOV 
_atom_sites.fract_transf_matrix[1][1]    0.004613 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000558 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008587 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014211 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
L 4 HEM A 1 201 201 HEM HEM . 
M 4 HEM B 1 201 201 HEM HEM . 
N 5 GOL B 1 202 221 GOL GOL . 
O 4 HEM C 1 201 201 HEM HEM . 
P 4 HEM D 1 201 201 HEM HEM . 
Q 5 GOL D 1 202 221 GOL GOL . 
R 4 HEM E 1 201 201 HEM HEM . 
S 4 HEM F 1 201 201 HEM HEM . 
T 4 HEM G 1 201 201 HEM HEM . 
U 4 HEM H 1 201 201 HEM HEM . 
V 5 GOL J 1 301 301 GOL GOL . 
W 6 HOH A 1 301 40 HOH HOH . 
W 6 HOH A 2 302 153 HOH HOH . 
W 6 HOH A 3 303 21 HOH HOH . 
W 6 HOH A 4 304 114 HOH HOH . 
W 6 HOH A 5 305 18 HOH HOH . 
W 6 HOH A 6 306 41 HOH HOH . 
W 6 HOH A 7 307 156 HOH HOH . 
W 6 HOH A 8 308 39 HOH HOH . 
W 6 HOH A 9 309 120 HOH HOH . 
W 6 HOH A 10 310 42 HOH HOH . 
W 6 HOH A 11 311 38 HOH HOH . 
W 6 HOH A 12 312 125 HOH HOH . 
W 6 HOH A 13 313 77 HOH HOH . 
W 6 HOH A 14 314 76 HOH HOH . 
W 6 HOH A 15 315 9 HOH HOH . 
W 6 HOH A 16 316 49 HOH HOH . 
W 6 HOH A 17 317 148 HOH HOH . 
W 6 HOH A 18 318 127 HOH HOH . 
W 6 HOH A 19 319 58 HOH HOH . 
W 6 HOH A 20 320 103 HOH HOH . 
W 6 HOH A 21 321 108 HOH HOH . 
W 6 HOH A 22 322 100 HOH HOH . 
W 6 HOH A 23 323 92 HOH HOH . 
W 6 HOH A 24 324 15 HOH HOH . 
W 6 HOH A 25 325 78 HOH HOH . 
W 6 HOH A 26 326 46 HOH HOH . 
W 6 HOH A 27 327 19 HOH HOH . 
W 6 HOH A 28 328 119 HOH HOH . 
W 6 HOH A 29 329 116 HOH HOH . 
W 6 HOH A 30 330 50 HOH HOH . 
W 6 HOH A 31 331 57 HOH HOH . 
W 6 HOH A 32 332 47 HOH HOH . 
W 6 HOH A 33 333 43 HOH HOH . 
W 6 HOH A 34 334 113 HOH HOH . 
W 6 HOH A 35 335 105 HOH HOH . 
W 6 HOH A 36 336 201 HOH HOH . 
W 6 HOH A 37 337 79 HOH HOH . 
W 6 HOH A 38 338 170 HOH HOH . 
W 6 HOH A 39 339 169 HOH HOH . 
W 6 HOH A 40 340 145 HOH HOH . 
X 6 HOH B 1 301 30 HOH HOH . 
X 6 HOH B 2 302 84 HOH HOH . 
X 6 HOH B 3 303 60 HOH HOH . 
X 6 HOH B 4 304 31 HOH HOH . 
X 6 HOH B 5 305 134 HOH HOH . 
X 6 HOH B 6 306 192 HOH HOH . 
X 6 HOH B 7 307 202 HOH HOH . 
X 6 HOH B 8 308 117 HOH HOH . 
X 6 HOH B 9 309 124 HOH HOH . 
X 6 HOH B 10 310 101 HOH HOH . 
X 6 HOH B 11 311 91 HOH HOH . 
Y 6 HOH C 1 301 184 HOH HOH . 
Y 6 HOH C 2 302 81 HOH HOH . 
Y 6 HOH C 3 303 181 HOH HOH . 
Y 6 HOH C 4 304 1 HOH HOH . 
Y 6 HOH C 5 305 143 HOH HOH . 
Y 6 HOH C 6 306 186 HOH HOH . 
Y 6 HOH C 7 307 23 HOH HOH . 
Y 6 HOH C 8 308 144 HOH HOH . 
Y 6 HOH C 9 309 80 HOH HOH . 
Y 6 HOH C 10 310 16 HOH HOH . 
Y 6 HOH C 11 311 98 HOH HOH . 
Y 6 HOH C 12 312 154 HOH HOH . 
Z 6 HOH D 1 301 88 HOH HOH . 
Z 6 HOH D 2 302 115 HOH HOH . 
Z 6 HOH D 3 303 28 HOH HOH . 
Z 6 HOH D 4 304 54 HOH HOH . 
Z 6 HOH D 5 305 24 HOH HOH . 
Z 6 HOH D 6 306 189 HOH HOH . 
Z 6 HOH D 7 307 197 HOH HOH . 
Z 6 HOH D 8 308 26 HOH HOH . 
Z 6 HOH D 9 309 93 HOH HOH . 
Z 6 HOH D 10 310 67 HOH HOH . 
Z 6 HOH D 11 311 36 HOH HOH . 
Z 6 HOH D 12 312 190 HOH HOH . 
Z 6 HOH D 13 313 29 HOH HOH . 
Z 6 HOH D 14 314 89 HOH HOH . 
Z 6 HOH D 15 315 130 HOH HOH . 
Z 6 HOH D 16 316 44 HOH HOH . 
Z 6 HOH D 17 317 87 HOH HOH . 
Z 6 HOH D 18 318 48 HOH HOH . 
Z 6 HOH D 19 319 73 HOH HOH . 
Z 6 HOH D 20 320 37 HOH HOH . 
Z 6 HOH D 21 321 55 HOH HOH . 
Z 6 HOH D 22 322 56 HOH HOH . 
Z 6 HOH D 23 323 102 HOH HOH . 
Z 6 HOH D 24 324 203 HOH HOH . 
Z 6 HOH D 25 325 180 HOH HOH . 
Z 6 HOH D 26 326 45 HOH HOH . 
Z 6 HOH D 27 327 187 HOH HOH . 
Z 6 HOH D 28 328 191 HOH HOH . 
Z 6 HOH D 29 329 86 HOH HOH . 
Z 6 HOH D 30 330 64 HOH HOH . 
Z 6 HOH D 31 331 171 HOH HOH . 
Z 6 HOH D 32 332 198 HOH HOH . 
Z 6 HOH D 33 333 166 HOH HOH . 
Z 6 HOH D 34 334 90 HOH HOH . 
Z 6 HOH D 35 335 75 HOH HOH . 
AA 6 HOH E 1 301 5 HOH HOH . 
AA 6 HOH E 2 302 126 HOH HOH . 
AA 6 HOH E 3 303 165 HOH HOH . 
AA 6 HOH E 4 304 157 HOH HOH . 
BA 6 HOH F 1 301 51 HOH HOH . 
BA 6 HOH F 2 302 61 HOH HOH . 
BA 6 HOH F 3 303 34 HOH HOH . 
BA 6 HOH F 4 304 62 HOH HOH . 
BA 6 HOH F 5 305 35 HOH HOH . 
BA 6 HOH F 6 306 74 HOH HOH . 
BA 6 HOH F 7 307 27 HOH HOH . 
BA 6 HOH F 8 308 69 HOH HOH . 
BA 6 HOH F 9 309 183 HOH HOH . 
BA 6 HOH F 10 310 110 HOH HOH . 
BA 6 HOH F 11 311 70 HOH HOH . 
BA 6 HOH F 12 312 175 HOH HOH . 
BA 6 HOH F 13 313 150 HOH HOH . 
BA 6 HOH F 14 314 205 HOH HOH . 
BA 6 HOH F 15 315 63 HOH HOH . 
CA 6 HOH G 1 301 53 HOH HOH . 
CA 6 HOH G 2 302 52 HOH HOH . 
CA 6 HOH G 3 303 66 HOH HOH . 
CA 6 HOH G 4 304 107 HOH HOH . 
CA 6 HOH G 5 305 106 HOH HOH . 
CA 6 HOH G 6 306 155 HOH HOH . 
CA 6 HOH G 7 307 104 HOH HOH . 
CA 6 HOH G 8 308 135 HOH HOH . 
CA 6 HOH G 9 309 112 HOH HOH . 
CA 6 HOH G 10 310 177 HOH HOH . 
CA 6 HOH G 11 311 204 HOH HOH . 
DA 6 HOH H 1 301 33 HOH HOH . 
DA 6 HOH H 2 302 82 HOH HOH . 
DA 6 HOH H 3 303 142 HOH HOH . 
DA 6 HOH H 4 304 59 HOH HOH . 
DA 6 HOH H 5 305 32 HOH HOH . 
DA 6 HOH H 6 306 85 HOH HOH . 
DA 6 HOH H 7 307 162 HOH HOH . 
DA 6 HOH H 8 308 179 HOH HOH . 
DA 6 HOH H 9 309 164 HOH HOH . 
DA 6 HOH H 10 310 111 HOH HOH . 
DA 6 HOH H 11 311 131 HOH HOH . 
DA 6 HOH H 12 312 133 HOH HOH . 
EA 6 HOH I 1 301 167 HOH HOH . 
EA 6 HOH I 2 302 152 HOH HOH . 
EA 6 HOH I 3 303 12 HOH HOH . 
EA 6 HOH I 4 304 185 HOH HOH . 
EA 6 HOH I 5 305 168 HOH HOH . 
FA 6 HOH J 1 401 10 HOH HOH . 
FA 6 HOH J 2 402 65 HOH HOH . 
FA 6 HOH J 3 403 20 HOH HOH . 
FA 6 HOH J 4 404 71 HOH HOH . 
FA 6 HOH J 5 405 13 HOH HOH . 
FA 6 HOH J 6 406 196 HOH HOH . 
FA 6 HOH J 7 407 68 HOH HOH . 
FA 6 HOH J 8 408 22 HOH HOH . 
FA 6 HOH J 9 409 195 HOH HOH . 
FA 6 HOH J 10 410 94 HOH HOH . 
FA 6 HOH J 11 411 118 HOH HOH . 
FA 6 HOH J 12 412 147 HOH HOH . 
FA 6 HOH J 13 413 83 HOH HOH . 
GA 6 HOH K 1 301 72 HOH HOH . 
GA 6 HOH K 2 302 14 HOH HOH . 
GA 6 HOH K 3 303 173 HOH HOH . 
GA 6 HOH K 4 304 17 HOH HOH . 
GA 6 HOH K 5 305 172 HOH HOH . 
GA 6 HOH K 6 306 159 HOH HOH . 
GA 6 HOH K 7 307 25 HOH HOH . 
GA 6 HOH K 8 308 178 HOH HOH . 
GA 6 HOH K 9 309 182 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . N 5 72.903 25.529 8.323 1 99.95 ? C1 GOL 202 B 1 
HETATM 2 O O1 GOL . . . N 5 71.685 24.995 7.82 1 99.98 ? O1 GOL 202 B 1 
HETATM 3 C C2 GOL . . . N 5 73.258 26.817 7.615 1 100.1 ? C2 GOL 202 B 1 
HETATM 4 O O2 GOL . . . N 5 72.239 27.792 7.855 1 100.14 ? O2 GOL 202 B 1 
HETATM 5 C C3 GOL . . . N 5 74.588 27.349 8.097 1 100.14 ? C3 GOL 202 B 1 
HETATM 6 O O3 GOL . . . N 5 75.662 26.557 7.61 1 100.2 ? O3 GOL 202 B 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#