data_8DOX # _model_server_result.job_id xAPlZpLl352rNcNkPd0dlA _model_server_result.datetime_utc '2024-11-15 04:14:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dox # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8DOX # _exptl.entry_id 8DOX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 655.704 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,5S)-N-{(1S,2S)-1-(4-fluoro-1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.74 _cell.angle_gamma 90 _cell.entry_id 8DOX _cell.length_a 115.333 _cell.length_b 52.913 _cell.length_c 45.604 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DOX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 146 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C _struct_conn.ptnr2_label_comp_id T2L _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id T2L _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.779 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C30 H37 F4 N5 O5 S' _chem_comp.formula_weight 655.704 _chem_comp.id T2L _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,5S)-N-{(1S,2S)-1-(4-fluoro-1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAL CD1 T2L doub 299 n n CD1 NAE T2L sing 300 n n CD1 CG T2L sing 301 n n NAE CAD T2L sing 302 n n CB CG T2L sing 303 n n CB CA T2L sing 304 n n CG CD2 T2L sing 305 n n O C T2L sing 306 n n CAD CD2 T2L sing 307 n n C CA T2L sing 308 n n C CBI T2L sing 309 n n CA N T2L sing 310 n n N CAJ T2L sing 311 n n FAW CAV T2L sing 312 n n OBE CAR T2L doub 313 n n CBI SBM T2L sing 314 n y CBI NBJ T2L doub 315 n y SBM CBL T2L sing 316 n y CAV FAY T2L sing 317 n n CAV FAX T2L sing 318 n n CAV CAU T2L sing 319 n n CAJ CAM T2L sing 320 n n CAJ OAK T2L doub 321 n n CBC CBA T2L sing 322 n n CAM NAN T2L sing 323 n n CAM CAQ T2L sing 324 n n CAR NAN T2L sing 325 n n CAR CAS T2L sing 326 n n NAT CAU T2L sing 327 n n NAT CAS T2L sing 328 n n NBJ CBK T2L sing 329 n y CBG CBF T2L sing 330 n n NAN CAO T2L sing 331 n n CAU OAZ T2L doub 332 n n CAQ CBF T2L sing 333 n n CAQ CAP T2L sing 334 n n CAS CBA T2L sing 335 n n CBA CBB T2L sing 336 n n CBA CBD T2L sing 337 n n CBL CBK T2L doub 338 n y CBL CBQ T2L sing 339 n y CBF CBH T2L sing 340 n n CBF CAP T2L sing 341 n n CBK CBN T2L sing 342 n y CAO CAP T2L sing 343 n n CBQ CBP T2L doub 344 n y CBN FBS T2L sing 345 n n CBN CBO T2L doub 346 n y CBP CBO T2L sing 347 n y CBO H1 T2L sing 348 n n CBP H2 T2L sing 349 n n CBQ H3 T2L sing 350 n n C H4 T2L sing 351 n n O H5 T2L sing 352 n n CA H6 T2L sing 353 n n CB H7 T2L sing 354 n n CB H8 T2L sing 355 n n CG H9 T2L sing 356 n n CD2 H10 T2L sing 357 n n CD2 H11 T2L sing 358 n n CAD H12 T2L sing 359 n n CAD H13 T2L sing 360 n n NAE H14 T2L sing 361 n n N H15 T2L sing 362 n n CAM H16 T2L sing 363 n n CAQ H17 T2L sing 364 n n CBG H18 T2L sing 365 n n CBG H19 T2L sing 366 n n CBG H20 T2L sing 367 n n CBH H21 T2L sing 368 n n CBH H22 T2L sing 369 n n CBH H23 T2L sing 370 n n CAP H24 T2L sing 371 n n CAO H25 T2L sing 372 n n CAO H26 T2L sing 373 n n CAS H27 T2L sing 374 n n CBC H28 T2L sing 375 n n CBC H29 T2L sing 376 n n CBC H30 T2L sing 377 n n CBD H31 T2L sing 378 n n CBD H32 T2L sing 379 n n CBD H33 T2L sing 380 n n CBB H34 T2L sing 381 n n CBB H35 T2L sing 382 n n CBB H36 T2L sing 383 n n NAT H37 T2L sing 384 n n # _atom_sites.entry_id 8DOX _atom_sites.fract_transf_matrix[1][1] 0.008671 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00212 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022574 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T2L A 1 401 1 T2L DRG . C 3 DMS A 1 402 2 DMS DMS . D 4 HOH A 1 501 88 HOH HOH . D 4 HOH A 2 502 113 HOH HOH . D 4 HOH A 3 503 116 HOH HOH . D 4 HOH A 4 504 76 HOH HOH . D 4 HOH A 5 505 91 HOH HOH . D 4 HOH A 6 506 101 HOH HOH . D 4 HOH A 7 507 54 HOH HOH . D 4 HOH A 8 508 95 HOH HOH . D 4 HOH A 9 509 45 HOH HOH . D 4 HOH A 10 510 111 HOH HOH . D 4 HOH A 11 511 62 HOH HOH . D 4 HOH A 12 512 24 HOH HOH . D 4 HOH A 13 513 108 HOH HOH . D 4 HOH A 14 514 17 HOH HOH . D 4 HOH A 15 515 92 HOH HOH . D 4 HOH A 16 516 102 HOH HOH . D 4 HOH A 17 517 10 HOH HOH . D 4 HOH A 18 518 103 HOH HOH . D 4 HOH A 19 519 5 HOH HOH . D 4 HOH A 20 520 93 HOH HOH . D 4 HOH A 21 521 53 HOH HOH . D 4 HOH A 22 522 6 HOH HOH . D 4 HOH A 23 523 14 HOH HOH . D 4 HOH A 24 524 31 HOH HOH . D 4 HOH A 25 525 80 HOH HOH . D 4 HOH A 26 526 97 HOH HOH . D 4 HOH A 27 527 20 HOH HOH . D 4 HOH A 28 528 3 HOH HOH . D 4 HOH A 29 529 115 HOH HOH . D 4 HOH A 30 530 73 HOH HOH . D 4 HOH A 31 531 90 HOH HOH . D 4 HOH A 32 532 82 HOH HOH . D 4 HOH A 33 533 30 HOH HOH . D 4 HOH A 34 534 96 HOH HOH . D 4 HOH A 35 535 119 HOH HOH . D 4 HOH A 36 536 49 HOH HOH . D 4 HOH A 37 537 36 HOH HOH . D 4 HOH A 38 538 46 HOH HOH . D 4 HOH A 39 539 21 HOH HOH . D 4 HOH A 40 540 37 HOH HOH . D 4 HOH A 41 541 110 HOH HOH . D 4 HOH A 42 542 47 HOH HOH . D 4 HOH A 43 543 16 HOH HOH . D 4 HOH A 44 544 79 HOH HOH . D 4 HOH A 45 545 122 HOH HOH . D 4 HOH A 46 546 60 HOH HOH . D 4 HOH A 47 547 68 HOH HOH . D 4 HOH A 48 548 1 HOH HOH . D 4 HOH A 49 549 25 HOH HOH . D 4 HOH A 50 550 34 HOH HOH . D 4 HOH A 51 551 105 HOH HOH . D 4 HOH A 52 552 126 HOH HOH . D 4 HOH A 53 553 41 HOH HOH . D 4 HOH A 54 554 104 HOH HOH . D 4 HOH A 55 555 27 HOH HOH . D 4 HOH A 56 556 35 HOH HOH . D 4 HOH A 57 557 39 HOH HOH . D 4 HOH A 58 558 64 HOH HOH . D 4 HOH A 59 559 51 HOH HOH . D 4 HOH A 60 560 12 HOH HOH . D 4 HOH A 61 561 2 HOH HOH . D 4 HOH A 62 562 66 HOH HOH . D 4 HOH A 63 563 61 HOH HOH . D 4 HOH A 64 564 77 HOH HOH . D 4 HOH A 65 565 9 HOH HOH . D 4 HOH A 66 566 72 HOH HOH . D 4 HOH A 67 567 23 HOH HOH . D 4 HOH A 68 568 29 HOH HOH . D 4 HOH A 69 569 74 HOH HOH . D 4 HOH A 70 570 48 HOH HOH . D 4 HOH A 71 571 44 HOH HOH . D 4 HOH A 72 572 15 HOH HOH . D 4 HOH A 73 573 26 HOH HOH . D 4 HOH A 74 574 84 HOH HOH . D 4 HOH A 75 575 89 HOH HOH . D 4 HOH A 76 576 78 HOH HOH . D 4 HOH A 77 577 50 HOH HOH . D 4 HOH A 78 578 114 HOH HOH . D 4 HOH A 79 579 71 HOH HOH . D 4 HOH A 80 580 28 HOH HOH . D 4 HOH A 81 581 83 HOH HOH . D 4 HOH A 82 582 118 HOH HOH . D 4 HOH A 83 583 38 HOH HOH . D 4 HOH A 84 584 7 HOH HOH . D 4 HOH A 85 585 32 HOH HOH . D 4 HOH A 86 586 40 HOH HOH . D 4 HOH A 87 587 106 HOH HOH . D 4 HOH A 88 588 52 HOH HOH . D 4 HOH A 89 589 125 HOH HOH . D 4 HOH A 90 590 8 HOH HOH . D 4 HOH A 91 591 112 HOH HOH . D 4 HOH A 92 592 11 HOH HOH . D 4 HOH A 93 593 75 HOH HOH . D 4 HOH A 94 594 70 HOH HOH . D 4 HOH A 95 595 123 HOH HOH . D 4 HOH A 96 596 117 HOH HOH . D 4 HOH A 97 597 57 HOH HOH . D 4 HOH A 98 598 22 HOH HOH . D 4 HOH A 99 599 99 HOH HOH . D 4 HOH A 100 600 63 HOH HOH . D 4 HOH A 101 601 65 HOH HOH . D 4 HOH A 102 602 55 HOH HOH . D 4 HOH A 103 603 43 HOH HOH . D 4 HOH A 104 604 120 HOH HOH . D 4 HOH A 105 605 19 HOH HOH . D 4 HOH A 106 606 18 HOH HOH . D 4 HOH A 107 607 109 HOH HOH . D 4 HOH A 108 608 100 HOH HOH . D 4 HOH A 109 609 94 HOH HOH . D 4 HOH A 110 610 98 HOH HOH . D 4 HOH A 111 611 58 HOH HOH . D 4 HOH A 112 612 121 HOH HOH . D 4 HOH A 113 613 85 HOH HOH . D 4 HOH A 114 614 13 HOH HOH . D 4 HOH A 115 615 59 HOH HOH . D 4 HOH A 116 616 124 HOH HOH . D 4 HOH A 117 617 42 HOH HOH . D 4 HOH A 118 618 107 HOH HOH . D 4 HOH A 119 619 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NBJ T2L . . . B 2 7.393 -4.163 22.1 1 29.25 ? NBJ T2L 401 A 1 HETATM 2 C CBK T2L . . . B 2 7.954 -4.78 23.174 1 31.3 ? CBK T2L 401 A 1 HETATM 3 C CBN T2L . . . B 2 7.369 -4.99 24.389 1 35.53 ? CBN T2L 401 A 1 HETATM 4 F FBS T2L . . . B 2 6.058 -4.602 24.633 1 33.43 ? FBS T2L 401 A 1 HETATM 5 C CBO T2L . . . B 2 8.051 -5.615 25.441 1 34.98 ? CBO T2L 401 A 1 HETATM 6 C CBP T2L . . . B 2 9.363 -6.031 25.22 1 34.8 ? CBP T2L 401 A 1 HETATM 7 C CBQ T2L . . . B 2 9.938 -5.804 23.968 1 33.13 ? CBQ T2L 401 A 1 HETATM 8 C CBL T2L . . . B 2 9.238 -5.187 22.994 1 35.67 ? CBL T2L 401 A 1 HETATM 9 S SBM T2L . . . B 2 9.785 -4.764 21.362 1 32.09 ? SBM T2L 401 A 1 HETATM 10 C CBI T2L . . . B 2 8.134 -4.045 20.982 1 29.43 ? CBI T2L 401 A 1 HETATM 11 C C T2L . . . B 2 7.614 -3.415 19.883 1 23.25 ? C T2L 401 A 1 HETATM 12 O O T2L . . . B 2 6.551 -3.871 19.38 1 20.56 ? O T2L 401 A 1 HETATM 13 C CA T2L . . . B 2 7.611 -1.857 20.128 1 20.97 ? CA T2L 401 A 1 HETATM 14 C CB T2L . . . B 2 7.088 -1.082 18.875 1 20.46 ? CB T2L 401 A 1 HETATM 15 C CG T2L . . . B 2 6.922 0.418 19.188 1 19.87 ? CG T2L 401 A 1 HETATM 16 C CD2 T2L . . . B 2 5.833 0.688 20.251 1 20.6 ? CD2 T2L 401 A 1 HETATM 17 C CAD T2L . . . B 2 5.187 2.006 19.804 1 20.93 ? CAD T2L 401 A 1 HETATM 18 N NAE T2L . . . B 2 5.451 2.014 18.305 1 21.26 ? NAE T2L 401 A 1 HETATM 19 C CD1 T2L . . . B 2 6.429 1.133 18.039 1 21.7 ? CD1 T2L 401 A 1 HETATM 20 O OAL T2L . . . B 2 6.884 0.982 16.901 1 21.69 ? OAL T2L 401 A 1 HETATM 21 N N T2L . . . B 2 8.967 -1.397 20.478 1 20.78 ? N T2L 401 A 1 HETATM 22 C CAJ T2L . . . B 2 9.261 -0.842 21.669 1 22.86 ? CAJ T2L 401 A 1 HETATM 23 O OAK T2L . . . B 2 8.41 -0.695 22.555 1 21.25 ? OAK T2L 401 A 1 HETATM 24 C CAM T2L . . . B 2 10.644 -0.425 21.856 1 20.82 ? CAM T2L 401 A 1 HETATM 25 C CAQ T2L . . . B 2 11.315 -1.341 22.736 1 21.3 ? CAQ T2L 401 A 1 HETATM 26 C CBF T2L . . . B 2 12.811 -1.144 22.998 1 23.01 ? CBF T2L 401 A 1 HETATM 27 C CBG T2L . . . B 2 13.717 -0.12 22.224 1 22.61 ? CBG T2L 401 A 1 HETATM 28 C CBH T2L . . . B 2 13.556 -2.412 23.459 1 25.75 ? CBH T2L 401 A 1 HETATM 29 C CAP T2L . . . B 2 11.766 -0.607 24.004 1 21.83 ? CAP T2L 401 A 1 HETATM 30 C CAO T2L . . . B 2 11.225 0.755 23.938 1 21.46 ? CAO T2L 401 A 1 HETATM 31 N NAN T2L . . . B 2 10.73 0.852 22.559 1 19.86 ? NAN T2L 401 A 1 HETATM 32 C CAR T2L . . . B 2 10.359 1.952 21.938 1 19.59 ? CAR T2L 401 A 1 HETATM 33 O OBE T2L . . . B 2 9.954 1.927 20.791 1 20.27 ? OBE T2L 401 A 1 HETATM 34 C CAS T2L . . . B 2 10.342 3.276 22.76 1 18.81 ? CAS T2L 401 A 1 HETATM 35 C CBA T2L . . . B 2 8.934 3.809 22.991 1 20.19 ? CBA T2L 401 A 1 HETATM 36 C CBC T2L . . . B 2 8.145 4.12 21.72 1 22.52 ? CBC T2L 401 A 1 HETATM 37 C CBD T2L . . . B 2 8.998 5.108 23.843 1 22.46 ? CBD T2L 401 A 1 HETATM 38 C CBB T2L . . . B 2 8.145 2.748 23.721 1 20.02 ? CBB T2L 401 A 1 HETATM 39 N NAT T2L . . . B 2 11.187 4.192 22.063 1 20.66 ? NAT T2L 401 A 1 HETATM 40 C CAU T2L . . . B 2 12.301 4.626 22.594 1 28.09 ? CAU T2L 401 A 1 HETATM 41 O OAZ T2L . . . B 2 12.664 4.375 23.75 1 31.33 ? OAZ T2L 401 A 1 HETATM 42 C CAV T2L . . . B 2 13.129 5.593 21.66 1 31.83 ? CAV T2L 401 A 1 HETATM 43 F FAX T2L . . . B 2 14.397 5.595 22.053 1 36.67 ? FAX T2L 401 A 1 HETATM 44 F FAY T2L . . . B 2 12.541 6.792 21.696 1 34 ? FAY T2L 401 A 1 HETATM 45 F FAW T2L . . . B 2 13.167 5.214 20.57 1 32.17 ? FAW T2L 401 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 45 #