data_8DOX # _model_server_result.job_id EV0FG3v8X1VP6pLJoiBU2g _model_server_result.datetime_utc '2025-08-22 19:37:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dox # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8DOX # _exptl.entry_id 8DOX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.74 _cell.angle_gamma 90 _cell.entry_id 8DOX _cell.length_a 115.333 _cell.length_b 52.913 _cell.length_c 45.604 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DOX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 146 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C _struct_conn.ptnr2_label_comp_id T2L _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id T2L _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.779 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 8DOX _atom_sites.fract_transf_matrix[1][1] 0.008671 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00212 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022574 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T2L A 1 401 1 T2L DRG . C 3 DMS A 1 402 2 DMS DMS . D 4 HOH A 1 501 88 HOH HOH . D 4 HOH A 2 502 113 HOH HOH . D 4 HOH A 3 503 116 HOH HOH . D 4 HOH A 4 504 76 HOH HOH . D 4 HOH A 5 505 91 HOH HOH . D 4 HOH A 6 506 101 HOH HOH . D 4 HOH A 7 507 54 HOH HOH . D 4 HOH A 8 508 95 HOH HOH . D 4 HOH A 9 509 45 HOH HOH . D 4 HOH A 10 510 111 HOH HOH . D 4 HOH A 11 511 62 HOH HOH . D 4 HOH A 12 512 24 HOH HOH . D 4 HOH A 13 513 108 HOH HOH . D 4 HOH A 14 514 17 HOH HOH . D 4 HOH A 15 515 92 HOH HOH . D 4 HOH A 16 516 102 HOH HOH . D 4 HOH A 17 517 10 HOH HOH . D 4 HOH A 18 518 103 HOH HOH . D 4 HOH A 19 519 5 HOH HOH . D 4 HOH A 20 520 93 HOH HOH . D 4 HOH A 21 521 53 HOH HOH . D 4 HOH A 22 522 6 HOH HOH . D 4 HOH A 23 523 14 HOH HOH . D 4 HOH A 24 524 31 HOH HOH . D 4 HOH A 25 525 80 HOH HOH . D 4 HOH A 26 526 97 HOH HOH . D 4 HOH A 27 527 20 HOH HOH . D 4 HOH A 28 528 3 HOH HOH . D 4 HOH A 29 529 115 HOH HOH . D 4 HOH A 30 530 73 HOH HOH . D 4 HOH A 31 531 90 HOH HOH . D 4 HOH A 32 532 82 HOH HOH . D 4 HOH A 33 533 30 HOH HOH . D 4 HOH A 34 534 96 HOH HOH . D 4 HOH A 35 535 119 HOH HOH . D 4 HOH A 36 536 49 HOH HOH . D 4 HOH A 37 537 36 HOH HOH . D 4 HOH A 38 538 46 HOH HOH . D 4 HOH A 39 539 21 HOH HOH . D 4 HOH A 40 540 37 HOH HOH . D 4 HOH A 41 541 110 HOH HOH . D 4 HOH A 42 542 47 HOH HOH . D 4 HOH A 43 543 16 HOH HOH . D 4 HOH A 44 544 79 HOH HOH . D 4 HOH A 45 545 122 HOH HOH . D 4 HOH A 46 546 60 HOH HOH . D 4 HOH A 47 547 68 HOH HOH . D 4 HOH A 48 548 1 HOH HOH . D 4 HOH A 49 549 25 HOH HOH . D 4 HOH A 50 550 34 HOH HOH . D 4 HOH A 51 551 105 HOH HOH . D 4 HOH A 52 552 126 HOH HOH . D 4 HOH A 53 553 41 HOH HOH . D 4 HOH A 54 554 104 HOH HOH . D 4 HOH A 55 555 27 HOH HOH . D 4 HOH A 56 556 35 HOH HOH . D 4 HOH A 57 557 39 HOH HOH . D 4 HOH A 58 558 64 HOH HOH . D 4 HOH A 59 559 51 HOH HOH . D 4 HOH A 60 560 12 HOH HOH . D 4 HOH A 61 561 2 HOH HOH . D 4 HOH A 62 562 66 HOH HOH . D 4 HOH A 63 563 61 HOH HOH . D 4 HOH A 64 564 77 HOH HOH . D 4 HOH A 65 565 9 HOH HOH . D 4 HOH A 66 566 72 HOH HOH . D 4 HOH A 67 567 23 HOH HOH . D 4 HOH A 68 568 29 HOH HOH . D 4 HOH A 69 569 74 HOH HOH . D 4 HOH A 70 570 48 HOH HOH . D 4 HOH A 71 571 44 HOH HOH . D 4 HOH A 72 572 15 HOH HOH . D 4 HOH A 73 573 26 HOH HOH . D 4 HOH A 74 574 84 HOH HOH . D 4 HOH A 75 575 89 HOH HOH . D 4 HOH A 76 576 78 HOH HOH . D 4 HOH A 77 577 50 HOH HOH . D 4 HOH A 78 578 114 HOH HOH . D 4 HOH A 79 579 71 HOH HOH . D 4 HOH A 80 580 28 HOH HOH . D 4 HOH A 81 581 83 HOH HOH . D 4 HOH A 82 582 118 HOH HOH . D 4 HOH A 83 583 38 HOH HOH . D 4 HOH A 84 584 7 HOH HOH . D 4 HOH A 85 585 32 HOH HOH . D 4 HOH A 86 586 40 HOH HOH . D 4 HOH A 87 587 106 HOH HOH . D 4 HOH A 88 588 52 HOH HOH . D 4 HOH A 89 589 125 HOH HOH . D 4 HOH A 90 590 8 HOH HOH . D 4 HOH A 91 591 112 HOH HOH . D 4 HOH A 92 592 11 HOH HOH . D 4 HOH A 93 593 75 HOH HOH . D 4 HOH A 94 594 70 HOH HOH . D 4 HOH A 95 595 123 HOH HOH . D 4 HOH A 96 596 117 HOH HOH . D 4 HOH A 97 597 57 HOH HOH . D 4 HOH A 98 598 22 HOH HOH . D 4 HOH A 99 599 99 HOH HOH . D 4 HOH A 100 600 63 HOH HOH . D 4 HOH A 101 601 65 HOH HOH . D 4 HOH A 102 602 55 HOH HOH . D 4 HOH A 103 603 43 HOH HOH . D 4 HOH A 104 604 120 HOH HOH . D 4 HOH A 105 605 19 HOH HOH . D 4 HOH A 106 606 18 HOH HOH . D 4 HOH A 107 607 109 HOH HOH . D 4 HOH A 108 608 100 HOH HOH . D 4 HOH A 109 609 94 HOH HOH . D 4 HOH A 110 610 98 HOH HOH . D 4 HOH A 111 611 58 HOH HOH . D 4 HOH A 112 612 121 HOH HOH . D 4 HOH A 113 613 85 HOH HOH . D 4 HOH A 114 614 13 HOH HOH . D 4 HOH A 115 615 59 HOH HOH . D 4 HOH A 116 616 124 HOH HOH . D 4 HOH A 117 617 42 HOH HOH . D 4 HOH A 118 618 107 HOH HOH . D 4 HOH A 119 619 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 7.041 -28.168 22.09 1 35.05 ? S DMS 402 A 1 HETATM 2 O O DMS . . . C 3 6.206 -27.671 20.883 1 40.01 ? O DMS 402 A 1 HETATM 3 C C1 DMS . . . C 3 5.873 -29.155 23.017 1 35.22 ? C1 DMS 402 A 1 HETATM 4 C C2 DMS . . . C 3 7.134 -26.781 23.161 1 38.73 ? C2 DMS 402 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #