data_8DOY # _model_server_result.job_id 1ZiQi6WaQeSPNB8rZAcGzA _model_server_result.datetime_utc '2024-11-09 02:41:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8doy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 8DOY # _exptl.entry_id 8DOY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.28 _cell.angle_gamma 90 _cell.entry_id 8DOY _cell.length_a 54.046 _cell.length_b 98.942 _cell.length_c 57.724 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DOY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 146 A CYS 145 1_555 G C T1X . A T1X 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? covale ? covale2 B SG CYS 146 B CYS 145 1_555 I C T1X . B T1X 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 264 n n O1 C6 MES sing 265 n n C2 C3 MES sing 266 n n C2 H21 MES sing 267 n n C2 H22 MES sing 268 n n C3 N4 MES sing 269 n n C3 H31 MES sing 270 n n C3 H32 MES sing 271 n n N4 C5 MES sing 272 n n N4 C7 MES sing 273 n n N4 HN4 MES sing 274 n n C5 C6 MES sing 275 n n C5 H51 MES sing 276 n n C5 H52 MES sing 277 n n C6 H61 MES sing 278 n n C6 H62 MES sing 279 n n C7 C8 MES sing 280 n n C7 H71 MES sing 281 n n C7 H72 MES sing 282 n n C8 S MES sing 283 n n C8 H81 MES sing 284 n n C8 H82 MES sing 285 n n S O1S MES doub 286 n n S O2S MES doub 287 n n S O3S MES sing 288 n n # _atom_sites.entry_id 8DOY _atom_sites.fract_transf_matrix[1][1] 0.018503 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005404 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1PE A 1 401 1 1PE 1PE . D 3 MES A 1 402 3 MES MES . E 4 DMS A 1 403 4 DMS DMS . F 5 PG0 A 1 404 6 PG0 PG0 . G 6 T1X A 1 405 400 T1X DRG . H 4 DMS B 1 401 5 DMS DMS . I 6 T1X B 1 402 401 T1X DRG . J 7 HOH A 1 501 29 HOH HOH . J 7 HOH A 2 502 76 HOH HOH . J 7 HOH A 3 503 130 HOH HOH . J 7 HOH A 4 504 31 HOH HOH . J 7 HOH A 5 505 104 HOH HOH . J 7 HOH A 6 506 120 HOH HOH . J 7 HOH A 7 507 106 HOH HOH . J 7 HOH A 8 508 7 HOH HOH . J 7 HOH A 9 509 123 HOH HOH . J 7 HOH A 10 510 121 HOH HOH . J 7 HOH A 11 511 51 HOH HOH . J 7 HOH A 12 512 20 HOH HOH . J 7 HOH A 13 513 13 HOH HOH . J 7 HOH A 14 514 5 HOH HOH . J 7 HOH A 15 515 145 HOH HOH . J 7 HOH A 16 516 103 HOH HOH . J 7 HOH A 17 517 102 HOH HOH . J 7 HOH A 18 518 68 HOH HOH . J 7 HOH A 19 519 144 HOH HOH . J 7 HOH A 20 520 119 HOH HOH . J 7 HOH A 21 521 118 HOH HOH . J 7 HOH A 22 522 42 HOH HOH . J 7 HOH A 23 523 82 HOH HOH . J 7 HOH A 24 524 63 HOH HOH . J 7 HOH A 25 525 22 HOH HOH . J 7 HOH A 26 526 79 HOH HOH . J 7 HOH A 27 527 18 HOH HOH . J 7 HOH A 28 528 3 HOH HOH . J 7 HOH A 29 529 23 HOH HOH . J 7 HOH A 30 530 21 HOH HOH . J 7 HOH A 31 531 8 HOH HOH . J 7 HOH A 32 532 58 HOH HOH . J 7 HOH A 33 533 35 HOH HOH . J 7 HOH A 34 534 131 HOH HOH . J 7 HOH A 35 535 16 HOH HOH . J 7 HOH A 36 536 24 HOH HOH . J 7 HOH A 37 537 140 HOH HOH . J 7 HOH A 38 538 27 HOH HOH . J 7 HOH A 39 539 54 HOH HOH . J 7 HOH A 40 540 80 HOH HOH . J 7 HOH A 41 541 90 HOH HOH . J 7 HOH A 42 542 78 HOH HOH . J 7 HOH A 43 543 108 HOH HOH . J 7 HOH A 44 544 28 HOH HOH . J 7 HOH A 45 545 17 HOH HOH . J 7 HOH A 46 546 93 HOH HOH . J 7 HOH A 47 547 112 HOH HOH . J 7 HOH A 48 548 141 HOH HOH . J 7 HOH A 49 549 98 HOH HOH . J 7 HOH A 50 550 49 HOH HOH . J 7 HOH A 51 551 129 HOH HOH . J 7 HOH A 52 552 109 HOH HOH . J 7 HOH A 53 553 111 HOH HOH . J 7 HOH A 54 554 136 HOH HOH . J 7 HOH A 55 555 56 HOH HOH . J 7 HOH A 56 556 47 HOH HOH . J 7 HOH A 57 557 138 HOH HOH . J 7 HOH A 58 558 152 HOH HOH . J 7 HOH A 59 559 41 HOH HOH . J 7 HOH A 60 560 59 HOH HOH . J 7 HOH A 61 561 116 HOH HOH . K 7 HOH B 1 501 46 HOH HOH . K 7 HOH B 2 502 2 HOH HOH . K 7 HOH B 3 503 25 HOH HOH . K 7 HOH B 4 504 44 HOH HOH . K 7 HOH B 5 505 6 HOH HOH . K 7 HOH B 6 506 132 HOH HOH . K 7 HOH B 7 507 94 HOH HOH . K 7 HOH B 8 508 40 HOH HOH . K 7 HOH B 9 509 36 HOH HOH . K 7 HOH B 10 510 92 HOH HOH . K 7 HOH B 11 511 60 HOH HOH . K 7 HOH B 12 512 61 HOH HOH . K 7 HOH B 13 513 39 HOH HOH . K 7 HOH B 14 514 32 HOH HOH . K 7 HOH B 15 515 30 HOH HOH . K 7 HOH B 16 516 137 HOH HOH . K 7 HOH B 17 517 150 HOH HOH . K 7 HOH B 18 518 64 HOH HOH . K 7 HOH B 19 519 38 HOH HOH . K 7 HOH B 20 520 74 HOH HOH . K 7 HOH B 21 521 1 HOH HOH . K 7 HOH B 22 522 53 HOH HOH . K 7 HOH B 23 523 10 HOH HOH . K 7 HOH B 24 524 117 HOH HOH . K 7 HOH B 25 525 96 HOH HOH . K 7 HOH B 26 526 37 HOH HOH . K 7 HOH B 27 527 70 HOH HOH . K 7 HOH B 28 528 107 HOH HOH . K 7 HOH B 29 529 4 HOH HOH . K 7 HOH B 30 530 43 HOH HOH . K 7 HOH B 31 531 127 HOH HOH . K 7 HOH B 32 532 85 HOH HOH . K 7 HOH B 33 533 69 HOH HOH . K 7 HOH B 34 534 72 HOH HOH . K 7 HOH B 35 535 14 HOH HOH . K 7 HOH B 36 536 95 HOH HOH . K 7 HOH B 37 537 19 HOH HOH . K 7 HOH B 38 538 65 HOH HOH . K 7 HOH B 39 539 115 HOH HOH . K 7 HOH B 40 540 97 HOH HOH . K 7 HOH B 41 541 135 HOH HOH . K 7 HOH B 42 542 9 HOH HOH . K 7 HOH B 43 543 34 HOH HOH . K 7 HOH B 44 544 89 HOH HOH . K 7 HOH B 45 545 101 HOH HOH . K 7 HOH B 46 546 105 HOH HOH . K 7 HOH B 47 547 125 HOH HOH . K 7 HOH B 48 548 134 HOH HOH . K 7 HOH B 49 549 33 HOH HOH . K 7 HOH B 50 550 12 HOH HOH . K 7 HOH B 51 551 122 HOH HOH . K 7 HOH B 52 552 67 HOH HOH . K 7 HOH B 53 553 100 HOH HOH . K 7 HOH B 54 554 87 HOH HOH . K 7 HOH B 55 555 86 HOH HOH . K 7 HOH B 56 556 83 HOH HOH . K 7 HOH B 57 557 66 HOH HOH . K 7 HOH B 58 558 91 HOH HOH . K 7 HOH B 59 559 113 HOH HOH . K 7 HOH B 60 560 55 HOH HOH . K 7 HOH B 61 561 48 HOH HOH . K 7 HOH B 62 562 142 HOH HOH . K 7 HOH B 63 563 124 HOH HOH . K 7 HOH B 64 564 128 HOH HOH . K 7 HOH B 65 565 88 HOH HOH . K 7 HOH B 66 566 114 HOH HOH . K 7 HOH B 67 567 81 HOH HOH . K 7 HOH B 68 568 26 HOH HOH . K 7 HOH B 69 569 126 HOH HOH . K 7 HOH B 70 570 146 HOH HOH . K 7 HOH B 71 571 52 HOH HOH . K 7 HOH B 72 572 50 HOH HOH . K 7 HOH B 73 573 84 HOH HOH . K 7 HOH B 74 574 11 HOH HOH . K 7 HOH B 75 575 147 HOH HOH . K 7 HOH B 76 576 149 HOH HOH . K 7 HOH B 77 577 151 HOH HOH . K 7 HOH B 78 578 75 HOH HOH . K 7 HOH B 79 579 45 HOH HOH . K 7 HOH B 80 580 62 HOH HOH . K 7 HOH B 81 581 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . D 3 24.206 5.05 15.196 1 51.08 ? O1 MES 402 A 1 HETATM 2 C C2 MES . . . D 3 23.814 6.326 15.667 1 52.58 ? C2 MES 402 A 1 HETATM 3 C C3 MES . . . D 3 22.949 7.035 14.657 1 56.74 ? C3 MES 402 A 1 HETATM 4 N N4 MES . . . D 3 23.622 7.103 13.318 1 60.52 ? N4 MES 402 A 1 HETATM 5 C C5 MES . . . D 3 24.125 5.754 12.91 1 56.11 ? C5 MES 402 A 1 HETATM 6 C C6 MES . . . D 3 24.972 5.185 14.012 1 50.94 ? C6 MES 402 A 1 HETATM 7 C C7 MES . . . D 3 22.707 7.669 12.273 1 59.24 ? C7 MES 402 A 1 HETATM 8 C C8 MES . . . D 3 22.454 9.159 12.42 1 61.79 ? C8 MES 402 A 1 HETATM 9 S S MES . . . D 3 20.952 9.675 11.602 1 61.93 ? S MES 402 A 1 HETATM 10 O O1S MES . . . D 3 21.197 9.584 10.177 1 58.07 ? O1S MES 402 A 1 HETATM 11 O O2S MES . . . D 3 20.74 11.033 12.04 1 60.15 ? O2S MES 402 A 1 HETATM 12 O O3S MES . . . D 3 19.919 8.745 12.048 1 51.13 ? O3S MES 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 12 #