data_8DPB
#
_model_server_result.job_id            qq7jMxP7CdQz6Li4EeLcqQ 
_model_server_result.datetime_utc      '2025-01-11 12:51:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dpb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":402}' 
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_entry.id    8DPB 
#
_exptl.entry_id    8DPB 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DPB 
_cell.length_a            66.23 
_cell.length_b            80.98 
_cell.length_c            166.38 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 8DPB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 69 A SER 69 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc2 A OD1 ASP 105 A ASP 105 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc3 A OE1 GLU 154 A GLU 154 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc4 E O3G GCP . A GCP 401 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc5 E O1B GCP . A GCP 401 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc6 F MG MG . A MG 402 1_555 K O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc7 B OG SER 69 B SER 69 1_555 J MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc8 B OD1 ASP 105 B ASP 105 1_555 J MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc9 B OE1 GLU 154 B GLU 154 1_555 J MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc10 I O3G GCP . B GCP 401 1_555 J MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc11 I O1B GCP . B GCP 401 1_555 J MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc12 J MG MG . B MG 402 1_555 L O HOH . B HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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_atom_sites.entry_id                     8DPB 
_atom_sites.fract_transf_matrix[1][1]    0.015099 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012349 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00601 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GCP A 1 401 401 GCP GCP . 
F 4 MG A 1 402 402 MG MG . 
G 5 GOL A 1 403 501 GOL GOL . 
H 5 GOL A 1 404 601 GOL GOL . 
I 3 GCP B 1 401 401 GCP GCP . 
J 4 MG B 1 402 402 MG MG . 
K 6 HOH A 1 501 29 HOH HOH . 
K 6 HOH A 2 502 22 HOH HOH . 
K 6 HOH A 3 503 54 HOH HOH . 
K 6 HOH A 4 504 24 HOH HOH . 
K 6 HOH A 5 505 1 HOH HOH . 
K 6 HOH A 6 506 403 HOH HOH . 
K 6 HOH A 7 507 19 HOH HOH . 
K 6 HOH A 8 508 12 HOH HOH . 
K 6 HOH A 9 509 13 HOH HOH . 
K 6 HOH A 10 510 52 HOH HOH . 
K 6 HOH A 11 511 35 HOH HOH . 
K 6 HOH A 12 512 27 HOH HOH . 
K 6 HOH A 13 513 48 HOH HOH . 
K 6 HOH A 14 514 30 HOH HOH . 
K 6 HOH A 15 515 18 HOH HOH . 
K 6 HOH A 16 516 10 HOH HOH . 
K 6 HOH A 17 517 20 HOH HOH . 
K 6 HOH A 18 518 55 HOH HOH . 
K 6 HOH A 19 519 6 HOH HOH . 
K 6 HOH A 20 520 33 HOH HOH . 
K 6 HOH A 21 521 7 HOH HOH . 
K 6 HOH A 22 522 28 HOH HOH . 
K 6 HOH A 23 523 53 HOH HOH . 
K 6 HOH A 24 524 31 HOH HOH . 
K 6 HOH A 25 525 23 HOH HOH . 
L 6 HOH B 1 501 59 HOH HOH . 
L 6 HOH B 2 502 65 HOH HOH . 
L 6 HOH B 3 503 14 HOH HOH . 
L 6 HOH B 4 504 38 HOH HOH . 
L 6 HOH B 5 505 64 HOH HOH . 
L 6 HOH B 6 506 403 HOH HOH . 
L 6 HOH B 7 507 32 HOH HOH . 
L 6 HOH B 8 508 40 HOH HOH . 
L 6 HOH B 9 509 36 HOH HOH . 
L 6 HOH B 10 510 3 HOH HOH . 
L 6 HOH B 11 511 15 HOH HOH . 
L 6 HOH B 12 512 57 HOH HOH . 
L 6 HOH B 13 513 8 HOH HOH . 
L 6 HOH B 14 514 50 HOH HOH . 
L 6 HOH B 15 515 2 HOH HOH . 
L 6 HOH B 16 516 62 HOH HOH . 
L 6 HOH B 17 517 4 HOH HOH . 
L 6 HOH B 18 518 41 HOH HOH . 
L 6 HOH B 19 519 58 HOH HOH . 
L 6 HOH B 20 520 37 HOH HOH . 
L 6 HOH B 21 521 34 HOH HOH . 
L 6 HOH B 22 522 56 HOH HOH . 
L 6 HOH B 23 523 49 HOH HOH . 
L 6 HOH B 24 524 39 HOH HOH . 
L 6 HOH B 25 525 47 HOH HOH . 
L 6 HOH B 26 526 60 HOH HOH . 
M 6 HOH C 1 801 43 HOH HOH . 
M 6 HOH C 2 802 16 HOH HOH . 
M 6 HOH C 3 803 26 HOH HOH . 
M 6 HOH C 4 804 11 HOH HOH . 
M 6 HOH C 5 805 42 HOH HOH . 
M 6 HOH C 6 806 21 HOH HOH . 
M 6 HOH C 7 807 5 HOH HOH . 
M 6 HOH C 8 808 61 HOH HOH . 
N 6 HOH D 1 801 63 HOH HOH . 
N 6 HOH D 2 802 44 HOH HOH . 
N 6 HOH D 3 803 17 HOH HOH . 
N 6 HOH D 4 804 25 HOH HOH . 
N 6 HOH D 5 805 45 HOH HOH . 
N 6 HOH D 6 806 9 HOH HOH . 
N 6 HOH D 7 807 51 HOH HOH . 
N 6 HOH D 8 808 46 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -44.371 
_atom_site.Cartn_y               17.429 
_atom_site.Cartn_z               18.609 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        32.04 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           402 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#