data_8DPF # _model_server_result.job_id L2nLNkLYnSBIEI_IGAqLCA _model_server_result.datetime_utc '2024-11-28 00:05:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dpf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":502}' # _entry.id 8DPF # _exptl.entry_id 8DPF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DPF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 127 A CYS 127 1_555 A SG CYS 207 A CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 E SG CYS 159 E CYS 147 1_555 E SG CYS 229 E CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 8DPF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 T4U A 1 501 502 T4U L01 . G 7 CLR A 1 502 503 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . G 7 147.712 135.512 128.151 1 20 ? C1 CLR 502 A 1 HETATM 2 C C2 CLR . . . G 7 148.592 134.837 129.207 1 20 ? C2 CLR 502 A 1 HETATM 3 C C3 CLR . . . G 7 147.794 133.889 130.065 1 20 ? C3 CLR 502 A 1 HETATM 4 C C4 CLR . . . G 7 147.163 132.838 129.179 1 20 ? C4 CLR 502 A 1 HETATM 5 C C5 CLR . . . G 7 146.276 133.468 128.129 1 20 ? C5 CLR 502 A 1 HETATM 6 C C6 CLR . . . G 7 145.011 133.097 128.017 1 20 ? C6 CLR 502 A 1 HETATM 7 C C7 CLR . . . G 7 144.049 133.614 126.999 1 20 ? C7 CLR 502 A 1 HETATM 8 C C8 CLR . . . G 7 144.727 134.422 125.899 1 20 ? C8 CLR 502 A 1 HETATM 9 C C9 CLR . . . G 7 145.816 135.33 126.495 1 20 ? C9 CLR 502 A 1 HETATM 10 C C10 CLR . . . G 7 146.919 134.535 127.25 1 20 ? C10 CLR 502 A 1 HETATM 11 C C11 CLR . . . G 7 146.386 136.296 125.443 1 20 ? C11 CLR 502 A 1 HETATM 12 C C12 CLR . . . G 7 145.312 137.07 124.668 1 20 ? C12 CLR 502 A 1 HETATM 13 C C13 CLR . . . G 7 144.281 136.137 124.027 1 20 ? C13 CLR 502 A 1 HETATM 14 C C14 CLR . . . G 7 143.705 135.275 125.165 1 20 ? C14 CLR 502 A 1 HETATM 15 C C15 CLR . . . G 7 142.488 134.592 124.55 1 20 ? C15 CLR 502 A 1 HETATM 16 C C16 CLR . . . G 7 141.957 135.619 123.534 1 20 ? C16 CLR 502 A 1 HETATM 17 C C17 CLR . . . G 7 142.971 136.791 123.506 1 20 ? C17 CLR 502 A 1 HETATM 18 C C18 CLR . . . G 7 144.926 135.292 122.918 1 20 ? C18 CLR 502 A 1 HETATM 19 C C19 CLR . . . G 7 147.882 133.838 126.272 1 20 ? C19 CLR 502 A 1 HETATM 20 C C20 CLR . . . G 7 142.97 137.526 122.157 1 20 ? C20 CLR 502 A 1 HETATM 21 C C21 CLR . . . G 7 144.346 138.057 121.767 1 20 ? C21 CLR 502 A 1 HETATM 22 C C22 CLR . . . G 7 141.942 138.664 122.18 1 20 ? C22 CLR 502 A 1 HETATM 23 C C23 CLR . . . G 7 141.784 139.407 120.882 1 20 ? C23 CLR 502 A 1 HETATM 24 C C24 CLR . . . G 7 140.361 139.429 120.381 1 20 ? C24 CLR 502 A 1 HETATM 25 C C25 CLR . . . G 7 140.13 140.203 119.083 1 20 ? C25 CLR 502 A 1 HETATM 26 C C26 CLR . . . G 7 139.008 141.217 119.238 1 20 ? C26 CLR 502 A 1 HETATM 27 C C27 CLR . . . G 7 139.836 139.264 117.924 1 20 ? C27 CLR 502 A 1 HETATM 28 O O1 CLR . . . G 7 148.619 133.26 131.053 1 20 ? O1 CLR 502 A 1 HETATM 29 H H11 CLR . . . G 7 147.076 136.103 128.606 1 20 ? H11 CLR 502 A 1 HETATM 30 H H12 CLR . . . G 7 148.281 136.07 127.581 1 20 ? H12 CLR 502 A 1 HETATM 31 H H21 CLR . . . G 7 149.312 134.343 128.761 1 20 ? H21 CLR 502 A 1 HETATM 32 H H22 CLR . . . G 7 149.001 135.523 129.775 1 20 ? H22 CLR 502 A 1 HETATM 33 H H3 CLR . . . G 7 147.072 134.396 130.52 1 20 ? H3 CLR 502 A 1 HETATM 34 H H41 CLR . . . G 7 146.631 132.226 129.73 1 20 ? H41 CLR 502 A 1 HETATM 35 H H42 CLR . . . G 7 147.869 132.319 128.74 1 20 ? H42 CLR 502 A 1 HETATM 36 H H6 CLR . . . G 7 144.693 132.455 128.628 1 20 ? H6 CLR 502 A 1 HETATM 37 H H71 CLR . . . G 7 143.385 134.179 127.447 1 20 ? H71 CLR 502 A 1 HETATM 38 H H72 CLR . . . G 7 143.576 132.858 126.594 1 20 ? H72 CLR 502 A 1 HETATM 39 H H8 CLR . . . G 7 145.147 133.799 125.255 1 20 ? H8 CLR 502 A 1 HETATM 40 H H9 CLR . . . G 7 145.368 135.892 127.171 1 20 ? H9 CLR 502 A 1 HETATM 41 H H111 CLR . . . G 7 146.926 135.787 124.809 1 20 ? H111 CLR 502 A 1 HETATM 42 H H112 CLR . . . G 7 146.975 136.934 125.888 1 20 ? H112 CLR 502 A 1 HETATM 43 H H121 CLR . . . G 7 145.741 137.603 123.968 1 20 ? H121 CLR 502 A 1 HETATM 44 H H122 CLR . . . G 7 144.855 137.685 125.277 1 20 ? H122 CLR 502 A 1 HETATM 45 H H14 CLR . . . G 7 143.354 135.909 125.832 1 20 ? H14 CLR 502 A 1 HETATM 46 H H151 CLR . . . G 7 141.819 134.396 125.229 1 20 ? H151 CLR 502 A 1 HETATM 47 H H152 CLR . . . G 7 142.742 133.763 124.107 1 20 ? H152 CLR 502 A 1 HETATM 48 H H161 CLR . . . G 7 141.074 135.942 123.804 1 20 ? H161 CLR 502 A 1 HETATM 49 H H162 CLR . . . G 7 141.883 135.215 122.647 1 20 ? H162 CLR 502 A 1 HETATM 50 H H17 CLR . . . G 7 142.685 137.441 124.19 1 20 ? H17 CLR 502 A 1 HETATM 51 H H181 CLR . . . G 7 145.55 135.841 122.41 1 20 ? H181 CLR 502 A 1 HETATM 52 H H182 CLR . . . G 7 144.234 134.953 122.321 1 20 ? H182 CLR 502 A 1 HETATM 53 H H183 CLR . . . G 7 145.404 134.542 123.315 1 20 ? H183 CLR 502 A 1 HETATM 54 H H191 CLR . . . G 7 147.556 132.947 126.075 1 20 ? H191 CLR 502 A 1 HETATM 55 H H192 CLR . . . G 7 148.763 133.778 126.672 1 20 ? H192 CLR 502 A 1 HETATM 56 H H193 CLR . . . G 7 147.936 134.35 125.451 1 20 ? H193 CLR 502 A 1 HETATM 57 H H20 CLR . . . G 7 142.688 136.882 121.465 1 20 ? H20 CLR 502 A 1 HETATM 58 H H211 CLR . . . G 7 144.72 138.569 122.505 1 20 ? H211 CLR 502 A 1 HETATM 59 H H212 CLR . . . G 7 144.264 138.631 120.985 1 20 ? H212 CLR 502 A 1 HETATM 60 H H213 CLR . . . G 7 144.937 137.313 121.559 1 20 ? H213 CLR 502 A 1 HETATM 61 H H221 CLR . . . G 7 142.205 139.306 122.874 1 20 ? H221 CLR 502 A 1 HETATM 62 H H222 CLR . . . G 7 141.07 138.291 122.431 1 20 ? H222 CLR 502 A 1 HETATM 63 H H231 CLR . . . G 7 142.353 138.987 120.202 1 20 ? H231 CLR 502 A 1 HETATM 64 H H232 CLR . . . G 7 142.093 140.33 121.002 1 20 ? H232 CLR 502 A 1 HETATM 65 H H241 CLR . . . G 7 139.794 139.822 121.079 1 20 ? H241 CLR 502 A 1 HETATM 66 H H242 CLR . . . G 7 140.066 138.503 120.246 1 20 ? H242 CLR 502 A 1 HETATM 67 H H25 CLR . . . G 7 140.96 140.697 118.872 1 20 ? H25 CLR 502 A 1 HETATM 68 H H261 CLR . . . G 7 138.574 141.356 118.379 1 20 ? H261 CLR 502 A 1 HETATM 69 H H262 CLR . . . G 7 139.374 142.061 119.556 1 20 ? H262 CLR 502 A 1 HETATM 70 H H263 CLR . . . G 7 138.356 140.885 119.88 1 20 ? H263 CLR 502 A 1 HETATM 71 H H271 CLR . . . G 7 140.135 139.67 117.092 1 20 ? H271 CLR 502 A 1 HETATM 72 H H272 CLR . . . G 7 138.879 139.096 117.877 1 20 ? H272 CLR 502 A 1 HETATM 73 H H273 CLR . . . G 7 140.306 138.423 118.061 1 20 ? H273 CLR 502 A 1 HETATM 74 H H1 CLR . . . G 7 149.24 132.831 130.682 1 20 ? H1 CLR 502 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 480 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 74 #