data_8DPG # _model_server_result.job_id E_Y4x3zkTdihAuL1JP34yw _model_server_result.datetime_utc '2024-11-21 14:08:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dpg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":502}' # _entry.id 8DPG # _exptl.entry_id 8DPG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DPG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 127 A CYS 127 1_555 A SG CYS 207 A CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 E SG CYS 159 E CYS 147 1_555 E SG CYS 229 E CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 102 n n C1 C10 CLR sing 103 n n C1 H11 CLR sing 104 n n C1 H12 CLR sing 105 n n C2 C3 CLR sing 106 n n C2 H21 CLR sing 107 n n C2 H22 CLR sing 108 n n C3 C4 CLR sing 109 n n C3 O1 CLR sing 110 n n C3 H3 CLR sing 111 n n C4 C5 CLR sing 112 n n C4 H41 CLR sing 113 n n C4 H42 CLR sing 114 n n C5 C6 CLR doub 115 n n C5 C10 CLR sing 116 n n C6 C7 CLR sing 117 n n C6 H6 CLR sing 118 n n C7 C8 CLR sing 119 n n C7 H71 CLR sing 120 n n C7 H72 CLR sing 121 n n C8 C9 CLR sing 122 n n C8 C14 CLR sing 123 n n C8 H8 CLR sing 124 n n C9 C10 CLR sing 125 n n C9 C11 CLR sing 126 n n C9 H9 CLR sing 127 n n C10 C19 CLR sing 128 n n C11 C12 CLR sing 129 n n C11 H111 CLR sing 130 n n C11 H112 CLR sing 131 n n C12 C13 CLR sing 132 n n C12 H121 CLR sing 133 n n C12 H122 CLR sing 134 n n C13 C14 CLR sing 135 n n C13 C17 CLR sing 136 n n C13 C18 CLR sing 137 n n C14 C15 CLR sing 138 n n C14 H14 CLR sing 139 n n C15 C16 CLR sing 140 n n C15 H151 CLR sing 141 n n C15 H152 CLR sing 142 n n C16 C17 CLR sing 143 n n C16 H161 CLR sing 144 n n C16 H162 CLR sing 145 n n C17 C20 CLR sing 146 n n C17 H17 CLR sing 147 n n C18 H181 CLR sing 148 n n C18 H182 CLR sing 149 n n C18 H183 CLR sing 150 n n C19 H191 CLR sing 151 n n C19 H192 CLR sing 152 n n C19 H193 CLR sing 153 n n C20 C21 CLR sing 154 n n C20 C22 CLR sing 155 n n C20 H20 CLR sing 156 n n C21 H211 CLR sing 157 n n C21 H212 CLR sing 158 n n C21 H213 CLR sing 159 n n C22 C23 CLR sing 160 n n C22 H221 CLR sing 161 n n C22 H222 CLR sing 162 n n C23 C24 CLR sing 163 n n C23 H231 CLR sing 164 n n C23 H232 CLR sing 165 n n C24 C25 CLR sing 166 n n C24 H241 CLR sing 167 n n C24 H242 CLR sing 168 n n C25 C26 CLR sing 169 n n C25 C27 CLR sing 170 n n C25 H25 CLR sing 171 n n C26 H261 CLR sing 172 n n C26 H262 CLR sing 173 n n C26 H263 CLR sing 174 n n C27 H271 CLR sing 175 n n C27 H272 CLR sing 176 n n C27 H273 CLR sing 177 n n O1 H1 CLR sing 178 n n # _atom_sites.entry_id 8DPG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 91Q A 1 501 502 91Q PSI . G 7 CLR A 1 502 503 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . G 7 102.059 117.805 120.943 1 20 ? C1 CLR 502 A 1 HETATM 2 C C2 CLR . . . G 7 101.179 117.343 119.783 1 20 ? C2 CLR 502 A 1 HETATM 3 C C3 CLR . . . G 7 99.89 118.122 119.742 1 20 ? C3 CLR 502 A 1 HETATM 4 C C4 CLR . . . G 7 100.199 119.597 119.585 1 20 ? C4 CLR 502 A 1 HETATM 5 C C5 CLR . . . G 7 101.132 120.116 120.662 1 20 ? C5 CLR 502 A 1 HETATM 6 C C6 CLR . . . G 7 100.835 121.233 121.31 1 20 ? C6 CLR 502 A 1 HETATM 7 C C7 CLR . . . G 7 101.571 121.759 122.497 1 20 ? C7 CLR 502 A 1 HETATM 8 C C8 CLR . . . G 7 102.994 121.223 122.581 1 20 ? C8 CLR 502 A 1 HETATM 9 C C9 CLR . . . G 7 102.989 119.702 122.329 1 20 ? C9 CLR 502 A 1 HETATM 10 C C10 CLR . . . G 7 102.408 119.316 120.932 1 20 ? C10 CLR 502 A 1 HETATM 11 C C11 CLR . . . G 7 104.351 119.05 122.638 1 20 ? C11 CLR 502 A 1 HETATM 12 C C12 CLR . . . G 7 104.98 119.479 123.971 1 20 ? C12 CLR 502 A 1 HETATM 13 C C13 CLR . . . G 7 105.039 121.001 124.137 1 20 ? C13 CLR 502 A 1 HETATM 14 C C14 CLR . . . G 7 103.596 121.509 123.949 1 20 ? C14 CLR 502 A 1 HETATM 15 C C15 CLR . . . G 7 103.605 122.943 124.478 1 20 ? C15 CLR 502 A 1 HETATM 16 C C16 CLR . . . G 7 104.75 122.972 125.51 1 20 ? C16 CLR 502 A 1 HETATM 17 C C17 CLR . . . G 7 105.293 121.519 125.585 1 20 ? C17 CLR 502 A 1 HETATM 18 C C18 CLR . . . G 7 106.048 121.616 123.141 1 20 ? C18 CLR 502 A 1 HETATM 19 C C19 CLR . . . G 7 103.402 119.609 119.789 1 20 ? C19 CLR 502 A 1 HETATM 20 C C20 CLR . . . G 7 106.675 121.306 126.25 1 20 ? C20 CLR 502 A 1 HETATM 21 C C21 CLR . . . G 7 106.583 120.362 127.447 1 20 ? C21 CLR 502 A 1 HETATM 22 C C22 CLR . . . G 7 107.402 122.598 126.671 1 20 ? C22 CLR 502 A 1 HETATM 23 C C23 CLR . . . G 7 108.204 123.284 125.584 1 20 ? C23 CLR 502 A 1 HETATM 24 C C24 CLR . . . G 7 109.527 122.602 125.287 1 20 ? C24 CLR 502 A 1 HETATM 25 C C25 CLR . . . G 7 109.831 122.295 123.812 1 20 ? C25 CLR 502 A 1 HETATM 26 C C26 CLR . . . G 7 109.703 123.533 122.934 1 20 ? C26 CLR 502 A 1 HETATM 27 C C27 CLR . . . G 7 108.962 121.165 123.278 1 20 ? C27 CLR 502 A 1 HETATM 28 O O1 CLR . . . G 7 99.068 117.666 118.659 1 20 ? O1 CLR 502 A 1 HETATM 29 H H11 CLR . . . G 7 101.599 117.593 121.782 1 20 ? H11 CLR 502 A 1 HETATM 30 H H12 CLR . . . G 7 102.89 117.287 120.923 1 20 ? H12 CLR 502 A 1 HETATM 31 H H21 CLR . . . G 7 101.662 117.462 118.939 1 20 ? H21 CLR 502 A 1 HETATM 32 H H22 CLR . . . G 7 100.978 116.389 119.887 1 20 ? H22 CLR 502 A 1 HETATM 33 H H3 CLR . . . G 7 99.405 117.988 120.597 1 20 ? H3 CLR 502 A 1 HETATM 34 H H41 CLR . . . G 7 99.358 120.098 119.616 1 20 ? H41 CLR 502 A 1 HETATM 35 H H42 CLR . . . G 7 100.603 119.749 118.706 1 20 ? H42 CLR 502 A 1 HETATM 36 H H6 CLR . . . G 7 100.109 121.741 120.993 1 20 ? H6 CLR 502 A 1 HETATM 37 H H71 CLR . . . G 7 101.084 121.512 123.311 1 20 ? H71 CLR 502 A 1 HETATM 38 H H72 CLR . . . G 7 101.599 122.737 122.447 1 20 ? H72 CLR 502 A 1 HETATM 39 H H8 CLR . . . G 7 103.542 121.666 121.889 1 20 ? H8 CLR 502 A 1 HETATM 40 H H9 CLR . . . G 7 102.362 119.329 122.993 1 20 ? H9 CLR 502 A 1 HETATM 41 H H111 CLR . . . G 7 104.976 119.254 121.918 1 20 ? H111 CLR 502 A 1 HETATM 42 H H112 CLR . . . G 7 104.236 118.082 122.656 1 20 ? H112 CLR 502 A 1 HETATM 43 H H121 CLR . . . G 7 105.888 119.118 124.026 1 20 ? H121 CLR 502 A 1 HETATM 44 H H122 CLR . . . G 7 104.464 119.094 124.707 1 20 ? H122 CLR 502 A 1 HETATM 45 H H14 CLR . . . G 7 103.048 120.998 124.585 1 20 ? H14 CLR 502 A 1 HETATM 46 H H151 CLR . . . G 7 102.755 123.16 124.9 1 20 ? H151 CLR 502 A 1 HETATM 47 H H152 CLR . . . G 7 103.77 123.577 123.759 1 20 ? H152 CLR 502 A 1 HETATM 48 H H161 CLR . . . G 7 104.416 123.256 126.384 1 20 ? H161 CLR 502 A 1 HETATM 49 H H162 CLR . . . G 7 105.439 123.597 125.219 1 20 ? H162 CLR 502 A 1 HETATM 50 H H17 CLR . . . G 7 104.656 121.03 126.155 1 20 ? H17 CLR 502 A 1 HETATM 51 H H181 CLR . . . G 7 106.944 121.306 123.35 1 20 ? H181 CLR 502 A 1 HETATM 52 H H182 CLR . . . G 7 106.026 122.583 123.193 1 20 ? H182 CLR 502 A 1 HETATM 53 H H183 CLR . . . G 7 105.826 121.347 122.236 1 20 ? H183 CLR 502 A 1 HETATM 54 H H191 CLR . . . G 7 102.922 119.703 118.954 1 20 ? H191 CLR 502 A 1 HETATM 55 H H192 CLR . . . G 7 104.035 118.88 119.711 1 20 ? H192 CLR 502 A 1 HETATM 56 H H193 CLR . . . G 7 103.88 120.429 119.974 1 20 ? H193 CLR 502 A 1 HETATM 57 H H20 CLR . . . G 7 107.245 120.859 125.59 1 20 ? H20 CLR 502 A 1 HETATM 58 H H211 CLR . . . G 7 106.11 119.551 127.189 1 20 ? H211 CLR 502 A 1 HETATM 59 H H212 CLR . . . G 7 106.104 120.799 128.172 1 20 ? H212 CLR 502 A 1 HETATM 60 H H213 CLR . . . G 7 107.478 120.126 127.747 1 20 ? H213 CLR 502 A 1 HETATM 61 H H221 CLR . . . G 7 108.02 122.372 127.397 1 20 ? H221 CLR 502 A 1 HETATM 62 H H222 CLR . . . G 7 106.756 123.233 127.036 1 20 ? H222 CLR 502 A 1 HETATM 63 H H231 CLR . . . G 7 108.382 124.208 125.858 1 20 ? H231 CLR 502 A 1 HETATM 64 H H232 CLR . . . G 7 107.672 123.317 124.767 1 20 ? H232 CLR 502 A 1 HETATM 65 H H241 CLR . . . G 7 110.247 123.17 125.633 1 20 ? H241 CLR 502 A 1 HETATM 66 H H242 CLR . . . G 7 109.559 121.757 125.784 1 20 ? H242 CLR 502 A 1 HETATM 67 H H25 CLR . . . G 7 110.771 121.993 123.763 1 20 ? H25 CLR 502 A 1 HETATM 68 H H261 CLR . . . G 7 110.314 123.459 122.181 1 20 ? H261 CLR 502 A 1 HETATM 69 H H262 CLR . . . G 7 109.925 124.325 123.453 1 20 ? H262 CLR 502 A 1 HETATM 70 H H263 CLR . . . G 7 108.791 123.608 122.604 1 20 ? H263 CLR 502 A 1 HETATM 71 H H271 CLR . . . G 7 109.219 120.965 122.362 1 20 ? H271 CLR 502 A 1 HETATM 72 H H272 CLR . . . G 7 108.026 121.431 123.3 1 20 ? H272 CLR 502 A 1 HETATM 73 H H273 CLR . . . G 7 109.085 120.373 123.829 1 20 ? H273 CLR 502 A 1 HETATM 74 H H1 CLR . . . G 7 99.475 117.731 117.927 1 20 ? H1 CLR 502 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 74 #