data_8DPJ
#
_model_server_result.job_id            hUNenecmvj0_Mhz5QD1LGA 
_model_server_result.datetime_utc      '2025-02-17 17:17:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dpj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    8DPJ 
#
_exptl.entry_id    8DPJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              668.866 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Hexa Vinylpyrrolidone K15' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DPJ 
_cell.length_a            89.598 
_cell.length_b            89.598 
_cell.length_c            134.158 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DPJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    'I 4 2' 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? 
metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc7 B MN MN . A MN 201 1_555 E O13 SE9 . A SE9 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc8 B MN MN . A MN 201 1_555 E O15 SE9 . A SE9 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? 
metalc ? metalc9 C MN MN . A MN 202 1_555 E O10 SE9 . A SE9 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? 
metalc ? metalc10 C MN MN . A MN 202 1_555 E O13 SE9 . A SE9 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
#
_chem_comp.formula           'C36 H56 N6 O6' 
_chem_comp.formula_weight    668.866 
_chem_comp.id                QQ4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Hexa Vinylpyrrolidone K15' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-dodecane-1,3,5,7,9,11-hexayl]hexa(pyrrolidin-2-one)" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C20 QQ4 sing 277 n n 
C21 N02 QQ4 sing 278 n n 
C20 C19 QQ4 sing 279 n n 
C19 C42 QQ4 sing 280 n n 
N02 C12 QQ4 sing 281 n n 
N02 C42 QQ4 sing 282 n n 
C12 C11 QQ4 sing 283 n n 
C42 O05 QQ4 doub 284 n n 
C38 C41 QQ4 sing 285 n n 
C38 N07 QQ4 sing 286 n n 
C41 C40 QQ4 sing 287 n n 
C10 C09 QQ4 sing 288 n n 
C11 C01 QQ4 sing 289 n n 
C40 C39 QQ4 sing 290 n n 
N07 C09 QQ4 sing 291 n n 
N07 C39 QQ4 sing 292 n n 
C01 C02 QQ4 sing 293 n n 
C01 N03 QQ4 sing 294 n n 
C08 C09 QQ4 sing 295 n n 
C08 C07 QQ4 sing 296 n n 
C02 C03 QQ4 sing 297 n n 
C39 O07 QQ4 doub 298 n n 
C26 C27 QQ4 sing 299 n n 
C26 N04 QQ4 sing 300 n n 
C22 N03 QQ4 sing 301 n n 
C22 C25 QQ4 sing 302 n n 
N03 C23 QQ4 sing 303 n n 
C06 C07 QQ4 sing 304 n n 
C06 C05 QQ4 sing 305 n n 
C07 N06 QQ4 sing 306 n n 
C27 C28 QQ4 sing 307 n n 
C03 N04 QQ4 sing 308 n n 
C03 C04 QQ4 sing 309 n n 
C25 C24 QQ4 sing 310 n n 
N04 C29 QQ4 sing 311 n n 
C04 C05 QQ4 sing 312 n n 
O04 C30 QQ4 doub 313 n n 
C23 O02 QQ4 doub 314 n n 
C23 C24 QQ4 sing 315 n n 
C05 N05 QQ4 sing 316 n n 
N06 C34 QQ4 sing 317 n n 
N06 C37 QQ4 sing 318 n n 
C34 C35 QQ4 sing 319 n n 
C28 C29 QQ4 sing 320 n n 
C29 O03 QQ4 doub 321 n n 
C30 N05 QQ4 sing 322 n n 
C30 C31 QQ4 sing 323 n n 
N05 C33 QQ4 sing 324 n n 
C37 O06 QQ4 doub 325 n n 
C37 C36 QQ4 sing 326 n n 
C35 C36 QQ4 sing 327 n n 
C31 C32 QQ4 sing 328 n n 
C33 C32 QQ4 sing 329 n n 
C12 H1 QQ4 sing 330 n n 
C12 H2 QQ4 sing 331 n n 
C11 H3 QQ4 sing 332 n n 
C11 H4 QQ4 sing 333 n n 
C10 H5 QQ4 sing 334 n n 
C10 H6 QQ4 sing 335 n n 
C10 H7 QQ4 sing 336 n n 
C01 H8 QQ4 sing 337 n n 
C02 H9 QQ4 sing 338 n n 
C02 H10 QQ4 sing 339 n n 
C03 H11 QQ4 sing 340 n n 
C04 H12 QQ4 sing 341 n n 
C04 H13 QQ4 sing 342 n n 
C05 H14 QQ4 sing 343 n n 
C06 H15 QQ4 sing 344 n n 
C06 H16 QQ4 sing 345 n n 
C07 H17 QQ4 sing 346 n n 
C08 H18 QQ4 sing 347 n n 
C08 H19 QQ4 sing 348 n n 
C09 H20 QQ4 sing 349 n n 
C19 H21 QQ4 sing 350 n n 
C19 H22 QQ4 sing 351 n n 
C20 H23 QQ4 sing 352 n n 
C20 H24 QQ4 sing 353 n n 
C21 H25 QQ4 sing 354 n n 
C21 H26 QQ4 sing 355 n n 
C22 H27 QQ4 sing 356 n n 
C22 H28 QQ4 sing 357 n n 
C24 H29 QQ4 sing 358 n n 
C24 H30 QQ4 sing 359 n n 
C25 H31 QQ4 sing 360 n n 
C25 H32 QQ4 sing 361 n n 
C26 H33 QQ4 sing 362 n n 
C26 H34 QQ4 sing 363 n n 
C27 H35 QQ4 sing 364 n n 
C27 H36 QQ4 sing 365 n n 
C28 H37 QQ4 sing 366 n n 
C28 H38 QQ4 sing 367 n n 
C31 H39 QQ4 sing 368 n n 
C31 H40 QQ4 sing 369 n n 
C32 H41 QQ4 sing 370 n n 
C32 H42 QQ4 sing 371 n n 
C33 H43 QQ4 sing 372 n n 
C33 H44 QQ4 sing 373 n n 
C34 H45 QQ4 sing 374 n n 
C34 H46 QQ4 sing 375 n n 
C35 H47 QQ4 sing 376 n n 
C35 H48 QQ4 sing 377 n n 
C36 H49 QQ4 sing 378 n n 
C36 H50 QQ4 sing 379 n n 
C38 H51 QQ4 sing 380 n n 
C38 H52 QQ4 sing 381 n n 
C40 H53 QQ4 sing 382 n n 
C40 H54 QQ4 sing 383 n n 
C41 H55 QQ4 sing 384 n n 
C41 H56 QQ4 sing 385 n n 
#
_atom_sites.entry_id                     8DPJ 
_atom_sites.fract_transf_matrix[1][1]    0.011161 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011161 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007454 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 201 201 MN MN . 
C 2 MN A 1 202 202 MN MN . 
D 3 QQ4 A 1 203 203 QQ4 PVP . 
E 4 SE9 A 1 204 204 SE9 007 . 
F 5 SO4 A 1 205 1 SO4 SO4 . 
G 5 SO4 A 1 206 2 SO4 SO4 . 
H 6 HOH A 1 301 1 HOH HOH . 
H 6 HOH A 2 302 2 HOH HOH . 
H 6 HOH A 3 303 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 QQ4 . . . D 3 42.254 35.626 13.63 1 98.53 ? C11 QQ4 203 A 1 
HETATM 2 C C10 QQ4 . . . D 3 48.398 31.279 11.53 1 105.49 ? C10 QQ4 203 A 1 
HETATM 3 C C01 QQ4 . . . D 3 41.215 34.728 12.963 1 112.44 ? C01 QQ4 203 A 1 
HETATM 4 C C02 QQ4 . . . D 3 41.918 33.672 12.1 1 106.47 ? C02 QQ4 203 A 1 
HETATM 5 C C03 QQ4 . . . D 3 41.803 32.272 12.726 1 105.5 ? C03 QQ4 203 A 1 
HETATM 6 C C04 QQ4 . . . D 3 42.515 31.252 11.815 1 110.44 ? C04 QQ4 203 A 1 
HETATM 7 C C05 QQ4 . . . D 3 43.749 30.562 12.423 1 103.19 ? C05 QQ4 203 A 1 
HETATM 8 C C06 QQ4 . . . D 3 44.516 29.874 11.271 1 106.72 ? C06 QQ4 203 A 1 
HETATM 9 C C07 QQ4 . . . D 3 46.038 29.72 11.419 1 109.07 ? C07 QQ4 203 A 1 
HETATM 10 C C08 QQ4 . . . D 3 46.691 30.059 10.068 1 107.47 ? C08 QQ4 203 A 1 
HETATM 11 C C09 QQ4 . . . D 3 48.109 30.667 10.153 1 110.48 ? C09 QQ4 203 A 1 
HETATM 12 C C22 QQ4 . . . D 3 39.962 36.939 12.551 1 114.83 ? C22 QQ4 203 A 1 
HETATM 13 C C23 QQ4 . . . D 3 39.493 35.191 11.009 1 120.02 ? C23 QQ4 203 A 1 
HETATM 14 C C24 QQ4 . . . D 3 38.662 36.409 10.595 1 117.76 ? C24 QQ4 203 A 1 
HETATM 15 C C25 QQ4 . . . D 3 39.358 37.562 11.299 1 123.98 ? C25 QQ4 203 A 1 
HETATM 16 C C26 QQ4 . . . D 3 39.764 31.842 14.241 1 97.34 ? C26 QQ4 203 A 1 
HETATM 17 C C27 QQ4 . . . D 3 38.256 31.684 14.009 1 100.47 ? C27 QQ4 203 A 1 
HETATM 18 C C28 QQ4 . . . D 3 38.112 31.149 12.585 1 85.31 ? C28 QQ4 203 A 1 
HETATM 19 C C29 QQ4 . . . D 3 39.442 31.47 11.916 1 111.11 ? C29 QQ4 203 A 1 
HETATM 20 C C30 QQ4 . . . D 3 45.194 32.74 12.707 1 121.83 ? C30 QQ4 203 A 1 
HETATM 21 C C31 QQ4 . . . D 3 45.913 33.389 13.875 1 112.48 ? C31 QQ4 203 A 1 
HETATM 22 C C32 QQ4 . . . D 3 46.069 32.271 14.871 1 105.77 ? C32 QQ4 203 A 1 
HETATM 23 C C33 QQ4 . . . D 3 44.85 31.384 14.63 1 110.22 ? C33 QQ4 203 A 1 
HETATM 24 C C34 QQ4 . . . D 3 45.883 27.139 10.987 1 93.4 ? C34 QQ4 203 A 1 
HETATM 25 C C35 QQ4 . . . D 3 46.258 25.946 11.877 1 76.49 ? C35 QQ4 203 A 1 
HETATM 26 C C36 QQ4 . . . D 3 47.441 26.386 12.664 1 76.91 ? C36 QQ4 203 A 1 
HETATM 27 C C37 QQ4 . . . D 3 47.347 27.885 12.726 1 94.53 ? C37 QQ4 203 A 1 
HETATM 28 C C38 QQ4 . . . D 3 50.394 29.507 10.582 1 108.26 ? C38 QQ4 203 A 1 
HETATM 29 C C39 QQ4 . . . D 3 49.199 28.823 8.653 1 120.05 ? C39 QQ4 203 A 1 
HETATM 30 C C40 QQ4 . . . D 3 50.5 28.031 8.71 1 115.65 ? C40 QQ4 203 A 1 
HETATM 31 C C41 QQ4 . . . D 3 51.381 28.868 9.611 1 103.35 ? C41 QQ4 203 A 1 
HETATM 32 N N03 QQ4 . . . D 3 40.28 35.557 12.201 1 117.88 ? N03 QQ4 203 A 1 
HETATM 33 N N04 QQ4 . . . D 3 40.407 31.887 12.931 1 106.09 ? N04 QQ4 203 A 1 
HETATM 34 N N05 QQ4 . . . D 3 44.554 31.507 13.193 1 109.95 ? N05 QQ4 203 A 1 
HETATM 35 N N06 QQ4 . . . D 3 46.393 28.341 11.706 1 100.07 ? N06 QQ4 203 A 1 
HETATM 36 N N07 QQ4 . . . D 3 49.163 29.715 9.813 1 114.7 ? N07 QQ4 203 A 1 
HETATM 37 O O02 QQ4 . . . D 3 39.484 34.152 10.433 1 117.02 ? O02 QQ4 203 A 1 
HETATM 38 O O03 QQ4 . . . D 3 39.629 31.392 10.742 1 107.62 ? O03 QQ4 203 A 1 
HETATM 39 O O04 QQ4 . . . D 3 45.163 33.155 11.594 1 126.88 ? O04 QQ4 203 A 1 
HETATM 40 O O06 QQ4 . . . D 3 47.95 28.584 13.475 1 88.07 ? O06 QQ4 203 A 1 
HETATM 41 O O07 QQ4 . . . D 3 48.373 28.725 7.812 1 121.59 ? O07 QQ4 203 A 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           349 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           41 
#