data_8DPN # _model_server_result.job_id x0QETwovwUUJl0731nchSg _model_server_result.datetime_utc '2025-07-10 19:54:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dpn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":601}' # _entry.id 8DPN # _exptl.entry_id 8DPN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 55.845 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 62 A CYS 62 1_555 G FE3 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc2 A SG CYS 88 A CYS 88 1_555 G FE4 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc3 A SG CYS 88 A CYS 88 1_555 G FE5 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc4 A SG CYS 154 A CYS 154 1_555 G FE1 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc5 A SG CYS 275 A CYS 275 1_555 F FE1 ICS . A ICS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc6 B SG CYS 70 B CYS 70 1_555 G FE7 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc7 B SG CYS 95 B CYS 95 1_555 G FE2 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc8 B SG CYS 95 B CYS 95 1_555 G FE8 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc9 B O ARG 108 B ARG 108 1_555 K FE FE . D FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc10 B SG CYS 153 B CYS 153 1_555 G FE6 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc11 B OD1 ASP 353 B ASP 353 1_555 H FE FE . B FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc12 B OD2 ASP 353 B ASP 353 1_555 H FE FE . B FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc13 B OD2 ASP 357 B ASP 357 1_555 H FE FE . B FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc14 H FE FE . B FE 602 1_555 D O ARG 108 D ARG 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc15 H FE FE . B FE 602 1_555 D OE1 GLU 109 D GLU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc16 C SG CYS 62 C CYS 62 1_555 L FE3 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc17 C SG CYS 88 C CYS 88 1_555 L FE4 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc18 C SG CYS 88 C CYS 88 1_555 L FE5 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc19 C SG CYS 154 C CYS 154 1_555 L FE1 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc20 C SG CYS 275 C CYS 275 1_555 J FE1 ICS . C ICS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc21 D SG CYS 70 D CYS 70 1_555 L FE7 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc22 D SG CYS 95 D CYS 95 1_555 L FE2 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc23 D SG CYS 95 D CYS 95 1_555 L FE8 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc24 D SG CYS 153 D CYS 153 1_555 L FE6 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc25 D OD1 ASP 353 D ASP 353 1_555 K FE FE . D FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc26 D OD2 ASP 353 D ASP 353 1_555 K FE FE . D FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc27 D OD2 ASP 357 D ASP 357 1_555 K FE FE . D FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8DPN _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HCA A 1 501 1494 HCA HCA . F 4 ICS A 1 502 1496 ICS ICS . G 5 CLF B 1 601 1498 CLF CLF . H 6 FE B 1 602 1492 FE FE . I 3 HCA C 1 501 1494 HCA HCA . J 4 ICS C 1 502 1496 ICS ICS . K 6 FE D 1 601 1492 FE FE . L 5 CLF D 1 602 1498 CLF CLF . M 7 HOH A 1 601 7 HOH HOH . M 7 HOH A 2 602 30 HOH HOH . M 7 HOH A 3 603 39 HOH HOH . M 7 HOH A 4 604 38 HOH HOH . M 7 HOH A 5 605 32 HOH HOH . M 7 HOH A 6 606 1 HOH HOH . M 7 HOH A 7 607 11 HOH HOH . N 7 HOH B 1 701 20 HOH HOH . N 7 HOH B 2 702 22 HOH HOH . N 7 HOH B 3 703 2 HOH HOH . N 7 HOH B 4 704 34 HOH HOH . N 7 HOH B 5 705 33 HOH HOH . N 7 HOH B 6 706 31 HOH HOH . N 7 HOH B 7 707 4 HOH HOH . N 7 HOH B 8 708 3 HOH HOH . N 7 HOH B 9 709 37 HOH HOH . N 7 HOH B 10 710 23 HOH HOH . O 7 HOH C 1 601 15 HOH HOH . O 7 HOH C 2 602 10 HOH HOH . O 7 HOH C 3 603 19 HOH HOH . O 7 HOH C 4 604 17 HOH HOH . O 7 HOH C 5 605 35 HOH HOH . O 7 HOH C 6 606 25 HOH HOH . O 7 HOH C 7 607 9 HOH HOH . O 7 HOH C 8 608 16 HOH HOH . O 7 HOH C 9 609 28 HOH HOH . O 7 HOH C 10 610 24 HOH HOH . O 7 HOH C 11 611 26 HOH HOH . P 7 HOH D 1 701 8 HOH HOH . P 7 HOH D 2 702 29 HOH HOH . P 7 HOH D 3 703 27 HOH HOH . P 7 HOH D 4 704 36 HOH HOH . P 7 HOH D 5 705 6 HOH HOH . P 7 HOH D 6 706 40 HOH HOH . P 7 HOH D 7 707 5 HOH HOH . P 7 HOH D 8 708 18 HOH HOH . P 7 HOH D 9 709 13 HOH HOH . P 7 HOH D 10 710 21 HOH HOH . P 7 HOH D 11 711 12 HOH HOH . P 7 HOH D 12 712 14 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 6 _atom_site.Cartn_x 150.077 _atom_site.Cartn_y 146.322 _atom_site.Cartn_z 172.067 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 76.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 601 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #