data_8DPR # _model_server_result.job_id jJr9HwOZk5ACn7ctAMTVYA _model_server_result.datetime_utc '2024-11-15 07:01:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dpr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8DPR # _exptl.entry_id 8DPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 669.754 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 2,2,2-trifluoro-N-{(2S)-1-[(1R,2S,5S)-2-({(2S)-1-(4-fluoro-1,3-benzothiazol-2-yl)-1-oxo-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}carbamothioyl)-6,6-dimethyl-3-azabicyclo[3.1.0]hexan-3-yl]-3,3-dimethyl-1-oxobutan-2-yl}acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.63 _cell.angle_gamma 90 _cell.entry_id 8DPR _cell.length_a 115.403 _cell.length_b 53.926 _cell.length_c 45.678 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 146 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C _struct_conn.ptnr2_label_comp_id T43 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id T43 _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.869 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C30 H35 F4 N5 O4 S2' _chem_comp.formula_weight 669.754 _chem_comp.id T43 _chem_comp.mon_nstd_flag . _chem_comp.name 2,2,2-trifluoro-N-{(2S)-1-[(1R,2S,5S)-2-({(2S)-1-(4-fluoro-1,3-benzothiazol-2-yl)-1-oxo-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}carbamothioyl)-6,6-dimethyl-3-azabicyclo[3.1.0]hexan-3-yl]-3,3-dimethyl-1-oxobutan-2-yl}acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAT CD2 T43 doub 299 n n CD2 NAR T43 sing 300 n n CD2 CG T43 sing 301 n n NAR CAQ T43 sing 302 n n CB CG T43 sing 303 n n CB CA T43 sing 304 n n CG CD1 T43 sing 305 n n O C T43 doub 306 n n C CA T43 sing 307 n n C CAH T43 sing 308 n n CAQ CD1 T43 sing 309 n n CA N T43 sing 310 n n FBM CBK T43 sing 311 n n N CAV T43 sing 312 n n OBH CBF T43 doub 313 n n CAH SAG T43 sing 314 n y CAH NAI T43 doub 315 n y SAG CAC T43 sing 316 n y CAV CAW T43 sing 317 n n CAV SAX T43 doub 318 n n CBK FBN T43 sing 319 n n CBK FBL T43 sing 320 n n CBK CBJ T43 sing 321 n n CBQ CBP T43 sing 322 n n CAW NAY T43 sing 323 n n CAW CBB T43 sing 324 n n CBF NAY T43 sing 325 n n CBF CBG T43 sing 326 n n NBI CBJ T43 sing 327 n n NBI CBG T43 sing 328 n n NAI CAD T43 sing 329 n y CBD CBC T43 sing 330 n n NAY CAZ T43 sing 331 n n CBJ OBO T43 doub 332 n n CBB CBC T43 sing 333 n n CBB CBA T43 sing 334 n n CBG CBP T43 sing 335 n n CAC CAD T43 doub 336 n y CAC CAB T43 sing 337 n y CBC CBE T43 sing 338 n n CBC CBA T43 sing 339 n n CBP CBS T43 sing 340 n n CBP CBR T43 sing 341 n n CAD CAE T43 sing 342 n y CAB CAA T43 doub 343 n y CAZ CBA T43 sing 344 n n CAE FAJ T43 sing 345 n n CAE CAF T43 doub 346 n y CAA CAF T43 sing 347 n y CAF H1 T43 sing 348 n n CAA H2 T43 sing 349 n n CAB H3 T43 sing 350 n n CA H4 T43 sing 351 n n CB H5 T43 sing 352 n n CB H6 T43 sing 353 n n CG H7 T43 sing 354 n n CD1 H8 T43 sing 355 n n CD1 H9 T43 sing 356 n n CAQ H10 T43 sing 357 n n CAQ H11 T43 sing 358 n n NAR H12 T43 sing 359 n n N H13 T43 sing 360 n n CAW H14 T43 sing 361 n n CBB H15 T43 sing 362 n n CBD H16 T43 sing 363 n n CBD H17 T43 sing 364 n n CBD H18 T43 sing 365 n n CBE H19 T43 sing 366 n n CBE H20 T43 sing 367 n n CBE H21 T43 sing 368 n n CBA H22 T43 sing 369 n n CAZ H23 T43 sing 370 n n CAZ H24 T43 sing 371 n n CBG H25 T43 sing 372 n n CBR H26 T43 sing 373 n n CBR H27 T43 sing 374 n n CBR H28 T43 sing 375 n n CBS H29 T43 sing 376 n n CBS H30 T43 sing 377 n n CBS H31 T43 sing 378 n n CBQ H32 T43 sing 379 n n CBQ H33 T43 sing 380 n n CBQ H34 T43 sing 381 n n NBI H35 T43 sing 382 n n # _atom_sites.entry_id 8DPR _atom_sites.fract_transf_matrix[1][1] 0.008665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001784 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018544 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T43 A 1 401 1 T43 DRG . C 3 DMS A 1 402 1 DMS DMS . D 4 ZN A 1 403 1 ZN ZN . E 5 HOH A 1 501 10 HOH HOH . E 5 HOH A 2 502 8 HOH HOH . E 5 HOH A 3 503 3 HOH HOH . E 5 HOH A 4 504 9 HOH HOH . E 5 HOH A 5 505 2 HOH HOH . E 5 HOH A 6 506 1 HOH HOH . E 5 HOH A 7 507 5 HOH HOH . E 5 HOH A 8 508 7 HOH HOH . E 5 HOH A 9 509 12 HOH HOH . E 5 HOH A 10 510 11 HOH HOH . E 5 HOH A 11 511 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAI T43 . . . B 2 7.85 -4.295 22.194 1 40.53 ? NAI T43 401 A 1 HETATM 2 C CAD T43 . . . B 2 8.445 -4.93 23.238 1 45.77 ? CAD T43 401 A 1 HETATM 3 C CAE T43 . . . B 2 7.914 -5.218 24.466 1 51.06 ? CAE T43 401 A 1 HETATM 4 F FAJ T43 . . . B 2 6.684 -4.877 24.746 1 42.7 ? FAJ T43 401 A 1 HETATM 5 C CAF T43 . . . B 2 8.652 -5.87 25.46 1 46.1 ? CAF T43 401 A 1 HETATM 6 C CAA T43 . . . B 2 9.962 -6.215 25.158 1 49.78 ? CAA T43 401 A 1 HETATM 7 C CAB T43 . . . B 2 10.474 -5.896 23.908 1 43.63 ? CAB T43 401 A 1 HETATM 8 C CAC T43 . . . B 2 9.737 -5.285 22.985 1 47.79 ? CAC T43 401 A 1 HETATM 9 S SAG T43 . . . B 2 10.148 -4.761 21.313 1 41.46 ? SAG T43 401 A 1 HETATM 10 C CAH T43 . . . B 2 8.544 -4.086 21.039 1 38.6 ? CAH T43 401 A 1 HETATM 11 C C T43 . . . B 2 7.965 -3.421 19.967 1 37.87 ? C T43 401 A 1 HETATM 12 O O T43 . . . B 2 6.967 -3.949 19.425 1 33.47 ? O T43 401 A 1 HETATM 13 C CA T43 . . . B 2 7.956 -1.815 20.164 1 35.24 ? CA T43 401 A 1 HETATM 14 C CB T43 . . . B 2 7.429 -1.024 18.953 1 39.85 ? CB T43 401 A 1 HETATM 15 C CG T43 . . . B 2 7.169 0.478 19.28 1 38.53 ? CG T43 401 A 1 HETATM 16 C CD1 T43 . . . B 2 5.996 0.586 20.238 1 39.18 ? CD1 T43 401 A 1 HETATM 17 C CAQ T43 . . . B 2 5.541 2.064 19.985 1 37.06 ? CAQ T43 401 A 1 HETATM 18 N NAR T43 . . . B 2 5.917 2.256 18.456 1 37.31 ? NAR T43 401 A 1 HETATM 19 C CD2 T43 . . . B 2 6.8 1.279 18.134 1 40.44 ? CD2 T43 401 A 1 HETATM 20 O OAT T43 . . . B 2 7.315 1.175 17.008 1 38.19 ? OAT T43 401 A 1 HETATM 21 N N T43 . . . B 2 9.283 -1.249 20.508 1 33.42 ? N T43 401 A 1 HETATM 22 C CAV T43 . . . B 2 9.692 -0.796 21.719 1 35.41 ? CAV T43 401 A 1 HETATM 23 S SAX T43 . . . B 2 8.672 -1.04 23.099 1 40.65 ? SAX T43 401 A 1 HETATM 24 C CAW T43 . . . B 2 11.06 -0.339 21.888 1 36.08 ? CAW T43 401 A 1 HETATM 25 C CBB T43 . . . B 2 11.841 -1.293 22.786 1 42.52 ? CBB T43 401 A 1 HETATM 26 C CBC T43 . . . B 2 13.333 -1.094 23.066 1 42.01 ? CBC T43 401 A 1 HETATM 27 C CBD T43 . . . B 2 14.132 -0.091 22.215 1 46.62 ? CBD T43 401 A 1 HETATM 28 C CBE T43 . . . B 2 14.152 -2.305 23.542 1 43.48 ? CBE T43 401 A 1 HETATM 29 C CBA T43 . . . B 2 12.281 -0.576 24.092 1 41.26 ? CBA T43 401 A 1 HETATM 30 C CAZ T43 . . . B 2 11.777 0.788 24.036 1 39.08 ? CAZ T43 401 A 1 HETATM 31 N NAY T43 . . . B 2 11.182 0.89 22.576 1 35.03 ? NAY T43 401 A 1 HETATM 32 C CBF T43 . . . B 2 10.701 1.966 21.98 1 35.1 ? CBF T43 401 A 1 HETATM 33 O OBH T43 . . . B 2 10.284 1.913 20.83 1 33.58 ? OBH T43 401 A 1 HETATM 34 C CBG T43 . . . B 2 10.771 3.279 22.807 1 37.73 ? CBG T43 401 A 1 HETATM 35 C CBP T43 . . . B 2 9.399 3.936 23.148 1 41.7 ? CBP T43 401 A 1 HETATM 36 C CBR T43 . . . B 2 9.583 5.055 24.173 1 41.6 ? CBR T43 401 A 1 HETATM 37 C CBS T43 . . . B 2 8.459 2.937 23.871 1 42.94 ? CBS T43 401 A 1 HETATM 38 C CBQ T43 . . . B 2 8.718 4.536 21.896 1 39.99 ? CBQ T43 401 A 1 HETATM 39 N NBI T43 . . . B 2 11.733 4.142 22.098 1 39.86 ? NBI T43 401 A 1 HETATM 40 C CBJ T43 . . . B 2 12.887 4.548 22.713 1 47.2 ? CBJ T43 401 A 1 HETATM 41 O OBO T43 . . . B 2 13.072 4.405 23.932 1 44.92 ? OBO T43 401 A 1 HETATM 42 C CBK T43 . . . B 2 13.867 5.371 21.808 1 52.12 ? CBK T43 401 A 1 HETATM 43 F FBM T43 . . . B 2 13.604 5.13 20.445 1 53.09 ? FBM T43 401 A 1 HETATM 44 F FBN T43 . . . B 2 15.218 5.056 22.019 1 55.32 ? FBN T43 401 A 1 HETATM 45 F FBL T43 . . . B 2 13.689 6.693 22.057 1 55.51 ? FBL T43 401 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 45 #