data_8DQ5
#
_model_server_result.job_id            J9hJyKNjb2x8-ETo7kGAnw 
_model_server_result.datetime_utc      '2024-11-09 02:33:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dq5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    8DQ5 
#
_exptl.entry_id    8DQ5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8DQ5 
_cell.length_a            53.771 
_cell.length_b            53.771 
_cell.length_c            221.288 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DQ5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 F N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 86 A GLU 67 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc2 A OD1 ASN 95 A ASN 76 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc3 A OE2 GLU 179 A GLU 160 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc4 A OE1 GLU 214 A GLU 195 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc5 A ND1 HIS 217 A HIS 198 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc6 C MN MN . A MN 401 1_555 H O HOH . A HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc7 D MN MN . A MN 402 1_555 H O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc8 D MN MN . A MN 402 1_555 H O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc9 E MG MG . A MG 403 1_555 B OD1 ASN 95 B ASN 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
metalc ? metalc10 B OE1 GLU 86 B GLU 67 1_555 F MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
metalc ? metalc11 B OE2 GLU 179 B GLU 160 1_555 G MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc12 B OE1 GLU 214 B GLU 195 1_555 G MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc13 B ND1 HIS 217 B HIS 198 1_555 G MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? 
metalc ? metalc14 G MN MN . B MN 402 1_555 I O HOH . B HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8DQ5 
_atom_sites.fract_transf_matrix[1][1]    0.018597 
_atom_sites.fract_transf_matrix[1][2]    0.010737 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021474 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004519 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 401 1 MN MN . 
D 2 MN A 1 402 2 MN MN . 
E 3 MG A 1 403 1 MG MG . 
F 2 MN B 1 401 3 MN MN . 
G 2 MN B 1 402 4 MN MN . 
H 4 HOH A 1 501 21 HOH HOH . 
H 4 HOH A 2 502 16 HOH HOH . 
H 4 HOH A 3 503 22 HOH HOH . 
H 4 HOH A 4 504 9 HOH HOH . 
H 4 HOH A 5 505 51 HOH HOH . 
H 4 HOH A 6 506 24 HOH HOH . 
H 4 HOH A 7 507 5 HOH HOH . 
H 4 HOH A 8 508 11 HOH HOH . 
H 4 HOH A 9 509 34 HOH HOH . 
H 4 HOH A 10 510 55 HOH HOH . 
H 4 HOH A 11 511 20 HOH HOH . 
H 4 HOH A 12 512 15 HOH HOH . 
H 4 HOH A 13 513 10 HOH HOH . 
H 4 HOH A 14 514 18 HOH HOH . 
H 4 HOH A 15 515 26 HOH HOH . 
H 4 HOH A 16 516 19 HOH HOH . 
H 4 HOH A 17 517 41 HOH HOH . 
H 4 HOH A 18 518 8 HOH HOH . 
H 4 HOH A 19 519 32 HOH HOH . 
H 4 HOH A 20 520 45 HOH HOH . 
H 4 HOH A 21 521 44 HOH HOH . 
H 4 HOH A 22 522 50 HOH HOH . 
H 4 HOH A 23 523 46 HOH HOH . 
H 4 HOH A 24 524 53 HOH HOH . 
H 4 HOH A 25 525 4 HOH HOH . 
H 4 HOH A 26 526 7 HOH HOH . 
H 4 HOH A 27 527 3 HOH HOH . 
H 4 HOH A 28 528 2 HOH HOH . 
H 4 HOH A 29 529 29 HOH HOH . 
H 4 HOH A 30 530 47 HOH HOH . 
H 4 HOH A 31 531 28 HOH HOH . 
H 4 HOH A 32 532 33 HOH HOH . 
H 4 HOH A 33 533 27 HOH HOH . 
H 4 HOH A 34 534 23 HOH HOH . 
H 4 HOH A 35 535 14 HOH HOH . 
H 4 HOH A 36 536 52 HOH HOH . 
H 4 HOH A 37 537 6 HOH HOH . 
H 4 HOH A 38 538 31 HOH HOH . 
H 4 HOH A 39 539 58 HOH HOH . 
H 4 HOH A 40 540 54 HOH HOH . 
I 4 HOH B 1 501 13 HOH HOH . 
I 4 HOH B 2 502 36 HOH HOH . 
I 4 HOH B 3 503 43 HOH HOH . 
I 4 HOH B 4 504 17 HOH HOH . 
I 4 HOH B 5 505 57 HOH HOH . 
I 4 HOH B 6 506 35 HOH HOH . 
I 4 HOH B 7 507 12 HOH HOH . 
I 4 HOH B 8 508 37 HOH HOH . 
I 4 HOH B 9 509 39 HOH HOH . 
I 4 HOH B 10 510 1 HOH HOH . 
I 4 HOH B 11 511 42 HOH HOH . 
I 4 HOH B 12 512 38 HOH HOH . 
I 4 HOH B 13 513 40 HOH HOH . 
I 4 HOH B 14 514 25 HOH HOH . 
I 4 HOH B 15 515 30 HOH HOH . 
I 4 HOH B 16 516 49 HOH HOH . 
I 4 HOH B 17 517 48 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               24.504 
_atom_site.Cartn_y               66.886 
_atom_site.Cartn_z               -6.559 
_atom_site.occupancy             0.58 
_atom_site.B_iso_or_equiv        26.3 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           402 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#