data_8DQQ # _model_server_result.job_id I7EnkbaXXYa4HRWtKVE5lg _model_server_result.datetime_utc '2024-11-23 15:52:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dqq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 8DQQ # _exptl.entry_id 8DQQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 162.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-hydroxy-2H-chromen-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DQQ _cell.length_a 57.907 _cell.length_b 58.771 _cell.length_c 273.611 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DQQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ARG 211 A ARG 211 1_555 D CA CA . A CA 502 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc2 A O LEU 214 A LEU 214 1_555 D CA CA . A CA 502 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc3 A OE1 GLU 322 A GLU 322 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc4 A OXT SER 451 A SER 451 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc5 B O ARG 211 B ARG 211 1_555 F CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc6 B O LEU 214 B LEU 214 1_555 F CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc7 B OE1 GLU 322 B GLU 322 1_555 F CA CA . B CA 502 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? metalc ? metalc8 F CA CA . B CA 502 1_555 H O HOH . B HOH 608 3_645 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? # _chem_comp.formula 'C9 H6 O3' _chem_comp.formula_weight 162.142 _chem_comp.id 07L _chem_comp.mon_nstd_flag . _chem_comp.name 7-hydroxy-2H-chromen-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7-hydroxycoumarin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C9 07L doub 1 n n C8 C9 07L sing 2 n n C8 C7 07L doub 3 n n C9 O10 07L sing 4 n n C7 C2 07L sing 5 n n O10 C3 07L sing 6 n n C2 C3 07L doub 7 n y C2 C1 07L sing 8 n y C3 C4 07L sing 9 n y C1 C6 07L doub 10 n y C4 C5 07L doub 11 n y C6 C5 07L sing 12 n y C5 O12 07L sing 13 n n C8 H1 07L sing 14 n n C7 H2 07L sing 15 n n C4 H3 07L sing 16 n n O12 H4 07L sing 17 n n C6 H5 07L sing 18 n n C1 H6 07L sing 19 n n # _atom_sites.entry_id 8DQQ _atom_sites.fract_transf_matrix[1][1] 0.017269 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017015 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 07L A 1 501 501 07L DRG . D 3 CA A 1 502 1 CA CA . E 4 ACT B 1 501 501 ACT ACT . F 3 CA B 1 502 2 CA CA . G 5 HOH A 1 601 85 HOH HOH . G 5 HOH A 2 602 89 HOH HOH . G 5 HOH A 3 603 61 HOH HOH . G 5 HOH A 4 604 69 HOH HOH . G 5 HOH A 5 605 8 HOH HOH . G 5 HOH A 6 606 87 HOH HOH . G 5 HOH A 7 607 56 HOH HOH . G 5 HOH A 8 608 57 HOH HOH . G 5 HOH A 9 609 101 HOH HOH . G 5 HOH A 10 610 108 HOH HOH . G 5 HOH A 11 611 15 HOH HOH . G 5 HOH A 12 612 79 HOH HOH . G 5 HOH A 13 613 103 HOH HOH . G 5 HOH A 14 614 100 HOH HOH . G 5 HOH A 15 615 28 HOH HOH . G 5 HOH A 16 616 116 HOH HOH . G 5 HOH A 17 617 26 HOH HOH . G 5 HOH A 18 618 24 HOH HOH . G 5 HOH A 19 619 113 HOH HOH . G 5 HOH A 20 620 33 HOH HOH . G 5 HOH A 21 621 80 HOH HOH . G 5 HOH A 22 622 59 HOH HOH . G 5 HOH A 23 623 36 HOH HOH . G 5 HOH A 24 624 39 HOH HOH . G 5 HOH A 25 625 29 HOH HOH . G 5 HOH A 26 626 52 HOH HOH . G 5 HOH A 27 627 41 HOH HOH . G 5 HOH A 28 628 77 HOH HOH . G 5 HOH A 29 629 34 HOH HOH . G 5 HOH A 30 630 111 HOH HOH . G 5 HOH A 31 631 46 HOH HOH . G 5 HOH A 32 632 45 HOH HOH . G 5 HOH A 33 633 42 HOH HOH . G 5 HOH A 34 634 32 HOH HOH . G 5 HOH A 35 635 27 HOH HOH . G 5 HOH A 36 636 44 HOH HOH . G 5 HOH A 37 637 40 HOH HOH . G 5 HOH A 38 638 21 HOH HOH . G 5 HOH A 39 639 55 HOH HOH . G 5 HOH A 40 640 81 HOH HOH . G 5 HOH A 41 641 64 HOH HOH . G 5 HOH A 42 642 48 HOH HOH . G 5 HOH A 43 643 92 HOH HOH . G 5 HOH A 44 644 54 HOH HOH . G 5 HOH A 45 645 37 HOH HOH . G 5 HOH A 46 646 13 HOH HOH . G 5 HOH A 47 647 75 HOH HOH . G 5 HOH A 48 648 12 HOH HOH . G 5 HOH A 49 649 58 HOH HOH . G 5 HOH A 50 650 18 HOH HOH . G 5 HOH A 51 651 17 HOH HOH . G 5 HOH A 52 652 106 HOH HOH . G 5 HOH A 53 653 14 HOH HOH . G 5 HOH A 54 654 9 HOH HOH . G 5 HOH A 55 655 38 HOH HOH . G 5 HOH A 56 656 22 HOH HOH . G 5 HOH A 57 657 4 HOH HOH . G 5 HOH A 58 658 5 HOH HOH . G 5 HOH A 59 659 65 HOH HOH . G 5 HOH A 60 660 76 HOH HOH . G 5 HOH A 61 661 74 HOH HOH . G 5 HOH A 62 662 82 HOH HOH . G 5 HOH A 63 663 86 HOH HOH . G 5 HOH A 64 664 105 HOH HOH . G 5 HOH A 65 665 73 HOH HOH . H 5 HOH B 1 601 25 HOH HOH . H 5 HOH B 2 602 114 HOH HOH . H 5 HOH B 3 603 96 HOH HOH . H 5 HOH B 4 604 67 HOH HOH . H 5 HOH B 5 605 35 HOH HOH . H 5 HOH B 6 606 23 HOH HOH . H 5 HOH B 7 607 70 HOH HOH . H 5 HOH B 8 608 83 HOH HOH . H 5 HOH B 9 609 19 HOH HOH . H 5 HOH B 10 610 31 HOH HOH . H 5 HOH B 11 611 60 HOH HOH . H 5 HOH B 12 612 94 HOH HOH . H 5 HOH B 13 613 112 HOH HOH . H 5 HOH B 14 614 99 HOH HOH . H 5 HOH B 15 615 88 HOH HOH . H 5 HOH B 16 616 63 HOH HOH . H 5 HOH B 17 617 66 HOH HOH . H 5 HOH B 18 618 104 HOH HOH . H 5 HOH B 19 619 10 HOH HOH . H 5 HOH B 20 620 49 HOH HOH . H 5 HOH B 21 621 62 HOH HOH . H 5 HOH B 22 622 93 HOH HOH . H 5 HOH B 23 623 71 HOH HOH . H 5 HOH B 24 624 84 HOH HOH . H 5 HOH B 25 625 107 HOH HOH . H 5 HOH B 26 626 110 HOH HOH . H 5 HOH B 27 627 97 HOH HOH . H 5 HOH B 28 628 1 HOH HOH . H 5 HOH B 29 629 109 HOH HOH . H 5 HOH B 30 630 90 HOH HOH . H 5 HOH B 31 631 95 HOH HOH . H 5 HOH B 32 632 30 HOH HOH . H 5 HOH B 33 633 53 HOH HOH . H 5 HOH B 34 634 50 HOH HOH . H 5 HOH B 35 635 72 HOH HOH . H 5 HOH B 36 636 6 HOH HOH . H 5 HOH B 37 637 43 HOH HOH . H 5 HOH B 38 638 102 HOH HOH . H 5 HOH B 39 639 91 HOH HOH . H 5 HOH B 40 640 2 HOH HOH . H 5 HOH B 41 641 47 HOH HOH . H 5 HOH B 42 642 68 HOH HOH . H 5 HOH B 43 643 51 HOH HOH . H 5 HOH B 44 644 78 HOH HOH . H 5 HOH B 45 645 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 07L . . . C 2 23.15 5.297 14.03 0.77 48.82 ? O11 07L 501 A 1 HETATM 2 C C9 07L . . . C 2 23.058 6.231 14.8 0.77 54.26 ? C9 07L 501 A 1 HETATM 3 C C8 07L . . . C 2 24.145 7.131 15.106 0.77 51.97 ? C8 07L 501 A 1 HETATM 4 C C7 07L . . . C 2 23.892 8.167 16.016 0.77 56.4 ? C7 07L 501 A 1 HETATM 5 C C2 07L . . . C 2 22.589 8.314 16.618 0.77 57.92 ? C2 07L 501 A 1 HETATM 6 O O10 07L . . . C 2 21.82 6.402 15.397 0.77 56.54 ? O10 07L 501 A 1 HETATM 7 C C3 07L . . . C 2 21.573 7.406 16.28 0.77 55.43 ? C3 07L 501 A 1 HETATM 8 C C4 07L . . . C 2 20.262 7.51 16.85 0.77 51.98 ? C4 07L 501 A 1 HETATM 9 C C5 07L . . . C 2 19.989 8.534 17.759 0.77 56.57 ? C5 07L 501 A 1 HETATM 10 O O12 07L . . . C 2 18.739 8.68 18.339 0.77 62.19 ? O12 07L 501 A 1 HETATM 11 C C6 07L . . . C 2 20.991 9.454 18.112 0.77 56.21 ? C6 07L 501 A 1 HETATM 12 C C1 07L . . . C 2 22.265 9.337 17.544 0.77 54.82 ? C1 07L 501 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #