data_8DQS
#
_model_server_result.job_id            sSPrWv3IjE4Kc-nDtLbADQ 
_model_server_result.datetime_utc      '2024-11-24 16:43:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dqs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    8DQS 
#
_exptl.entry_id    8DQS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              434.369 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-2-[4-(trifluoromethyl)phenyl]-3,6-dihydropyrimidine-4-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DQS 
_cell.length_a            88.782 
_cell.length_b            88.782 
_cell.length_c            135.117 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DQS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    'I 4 2' 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc7 B MN MN . A MN 201 1_555 D O13 T8I . A T8I 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc8 B MN MN . A MN 201 1_555 D O15 T8I . A T8I 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? 
metalc ? metalc9 C MN MN . A MN 202 1_555 D O10 T8I . A T8I 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc10 C MN MN . A MN 202 1_555 D O13 T8I . A T8I 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? 
#
_chem_comp.formula           'C20 H17 F3 N4 O4' 
_chem_comp.formula_weight    434.369 
_chem_comp.id                T8I 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-2-[4-(trifluoromethyl)phenyl]-3,6-dihydropyrimidine-4-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C30 C29 T8I doub 399 n y 
C30 N31 T8I sing 400 n y 
C29 C05 T8I sing 401 n y 
N31 C03 T8I doub 402 n y 
C05 C06 T8I sing 403 n n 
C05 C04 T8I doub 404 n y 
C03 C04 T8I sing 405 n y 
C03 O02 T8I sing 406 n n 
F26 C25 T8I sing 407 n n 
C06 C07 T8I sing 408 n n 
O02 C01 T8I sing 409 n n 
C25 F27 T8I sing 410 n n 
C25 F28 T8I sing 411 n n 
C25 C22 T8I sing 412 n n 
C21 C22 T8I doub 413 n y 
C21 C20 T8I sing 414 n y 
C07 N08 T8I sing 415 n n 
C22 C23 T8I sing 416 n y 
C20 C19 T8I doub 417 n y 
N08 C09 T8I sing 418 n n 
C23 C24 T8I doub 419 n y 
C19 C24 T8I sing 420 n y 
C19 C17 T8I sing 421 n n 
N18 C17 T8I sing 422 n n 
N18 C11 T8I sing 423 n n 
C09 O10 T8I doub 424 n n 
C09 C11 T8I sing 425 n n 
C17 N16 T8I doub 426 n n 
C11 C12 T8I doub 427 n n 
N16 C14 T8I sing 428 n n 
C12 C14 T8I sing 429 n n 
C12 O13 T8I sing 430 n n 
C14 O15 T8I doub 431 n n 
C01 H1 T8I sing 432 n n 
C01 H2 T8I sing 433 n n 
C01 H3 T8I sing 434 n n 
C04 H4 T8I sing 435 n n 
C06 H5 T8I sing 436 n n 
C06 H6 T8I sing 437 n n 
C07 H7 T8I sing 438 n n 
C07 H8 T8I sing 439 n n 
C20 H9 T8I sing 440 n n 
C21 H10 T8I sing 441 n n 
C23 H11 T8I sing 442 n n 
C24 H12 T8I sing 443 n n 
C29 H13 T8I sing 444 n n 
C30 H14 T8I sing 445 n n 
N08 H15 T8I sing 446 n n 
N18 H16 T8I sing 447 n n 
O13 H17 T8I sing 448 n n 
#
_atom_sites.entry_id                     8DQS 
_atom_sites.fract_transf_matrix[1][1]    0.011264 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011264 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007401 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 201 201 MN MN . 
C 2 MN A 1 202 202 MN MN . 
D 3 T8I A 1 203 203 T8I 010 . 
E 4 QQ4 A 1 204 204 QQ4 PVP . 
F 5 HOH A 1 301 3 HOH HOH . 
F 5 HOH A 2 302 16 HOH HOH . 
F 5 HOH A 3 303 1 HOH HOH . 
F 5 HOH A 4 304 9 HOH HOH . 
F 5 HOH A 5 305 7 HOH HOH . 
F 5 HOH A 6 306 15 HOH HOH . 
F 5 HOH A 7 307 13 HOH HOH . 
F 5 HOH A 8 308 6 HOH HOH . 
F 5 HOH A 9 309 11 HOH HOH . 
F 5 HOH A 10 310 5 HOH HOH . 
F 5 HOH A 11 311 14 HOH HOH . 
F 5 HOH A 12 312 10 HOH HOH . 
F 5 HOH A 13 313 4 HOH HOH . 
F 5 HOH A 14 314 12 HOH HOH . 
F 5 HOH A 15 315 8 HOH HOH . 
F 5 HOH A 16 316 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 T8I . . . D 3 39.544 9.908 14.104 1 134.74 ? C01 T8I 203 A 1 
HETATM 2 C C03 T8I . . . D 3 39.93 10.829 11.965 1 135.49 ? C03 T8I 203 A 1 
HETATM 3 C C04 T8I . . . D 3 41.041 11.524 12.406 1 134.35 ? C04 T8I 203 A 1 
HETATM 4 C C05 T8I . . . D 3 41.525 12.62 11.708 1 133.97 ? C05 T8I 203 A 1 
HETATM 5 C C06 T8I . . . D 3 42.755 13.402 12.196 1 134.05 ? C06 T8I 203 A 1 
HETATM 6 C C07 T8I . . . D 3 43.056 13.241 13.695 1 127.95 ? C07 T8I 203 A 1 
HETATM 7 C C09 T8I . . . D 3 41.766 14.104 15.761 1 96.24 ? C09 T8I 203 A 1 
HETATM 8 C C11 T8I . . . D 3 40.372 14.205 16.371 1 100.67 ? C11 T8I 203 A 1 
HETATM 9 C C12 T8I . . . D 3 40.095 14.864 17.683 1 93.5 ? C12 T8I 203 A 1 
HETATM 10 C C14 T8I . . . D 3 38.694 14.92 18.212 1 89.59 ? C14 T8I 203 A 1 
HETATM 11 C C17 T8I . . . D 3 37.91 13.706 16.169 1 109.91 ? C17 T8I 203 A 1 
HETATM 12 C C19 T8I . . . D 3 36.746 13.124 15.414 1 116.75 ? C19 T8I 203 A 1 
HETATM 13 C C20 T8I . . . D 3 36.957 12.463 14.223 1 116.85 ? C20 T8I 203 A 1 
HETATM 14 C C21 T8I . . . D 3 35.863 11.944 13.555 1 134.57 ? C21 T8I 203 A 1 
HETATM 15 C C22 T8I . . . D 3 34.587 12.096 14.085 1 149.83 ? C22 T8I 203 A 1 
HETATM 16 C C23 T8I . . . D 3 34.394 12.765 15.284 1 137.87 ? C23 T8I 203 A 1 
HETATM 17 C C24 T8I . . . D 3 35.483 13.286 15.953 1 127.65 ? C24 T8I 203 A 1 
HETATM 18 C C25 T8I . . . D 3 33.38 11.518 13.345 1 153.05 ? C25 T8I 203 A 1 
HETATM 19 C C29 T8I . . . D 3 40.84 12.965 10.549 1 124.59 ? C29 T8I 203 A 1 
HETATM 20 C C30 T8I . . . D 3 39.732 12.23 10.147 1 118.17 ? C30 T8I 203 A 1 
HETATM 21 F F26 T8I . . . D 3 33.632 11.515 11.998 1 137.06 ? F26 T8I 203 A 1 
HETATM 22 F F27 T8I . . . D 3 32.271 12.276 13.602 1 149.61 ? F27 T8I 203 A 1 
HETATM 23 F F28 T8I . . . D 3 33.163 10.242 13.79 1 160.97 ? F28 T8I 203 A 1 
HETATM 24 N N08 T8I . . . D 3 41.843 13.447 14.47 1 115.82 ? N08 T8I 203 A 1 
HETATM 25 N N16 T8I . . . D 3 37.614 14.346 17.461 1 100.81 ? N16 T8I 203 A 1 
HETATM 26 N N18 T8I . . . D 3 39.279 13.632 15.619 1 111.84 ? N18 T8I 203 A 1 
HETATM 27 N N31 T8I . . . D 3 39.308 11.193 10.853 1 130.97 ? N31 T8I 203 A 1 
HETATM 28 O O02 T8I . . . D 3 39.478 9.732 12.714 1 147.78 ? O02 T8I 203 A 1 
HETATM 29 O O10 T8I . . . D 3 42.724 14.535 16.303 1 98.53 ? O10 T8I 203 A 1 
HETATM 30 O O13 T8I . . . D 3 41.146 15.419 18.411 1 94.33 ? O13 T8I 203 A 1 
HETATM 31 O O15 T8I . . . D 3 38.43 15.43 19.237 1 84.96 ? O15 T8I 203 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#