data_8DQS # _model_server_result.job_id g8Vt4XEBUE2kzCJkhB7qOQ _model_server_result.datetime_utc '2024-11-13 21:28:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dqs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 8DQS # _exptl.entry_id 8DQS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 434.369 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-2-[4-(trifluoromethyl)phenyl]-3,6-dihydropyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DQS _cell.length_a 88.782 _cell.length_b 88.782 _cell.length_c 135.117 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DQS _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc7 B MN MN . A MN 201 1_555 D O13 T8I . A T8I 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc8 B MN MN . A MN 201 1_555 D O15 T8I . A T8I 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc9 C MN MN . A MN 202 1_555 D O10 T8I . A T8I 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc10 C MN MN . A MN 202 1_555 D O13 T8I . A T8I 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? # _chem_comp.formula 'C20 H17 F3 N4 O4' _chem_comp.formula_weight 434.369 _chem_comp.id T8I _chem_comp.mon_nstd_flag . _chem_comp.name 5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-2-[4-(trifluoromethyl)phenyl]-3,6-dihydropyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 C29 T8I doub 399 n y C30 N31 T8I sing 400 n y C29 C05 T8I sing 401 n y N31 C03 T8I doub 402 n y C05 C06 T8I sing 403 n n C05 C04 T8I doub 404 n y C03 C04 T8I sing 405 n y C03 O02 T8I sing 406 n n F26 C25 T8I sing 407 n n C06 C07 T8I sing 408 n n O02 C01 T8I sing 409 n n C25 F27 T8I sing 410 n n C25 F28 T8I sing 411 n n C25 C22 T8I sing 412 n n C21 C22 T8I doub 413 n y C21 C20 T8I sing 414 n y C07 N08 T8I sing 415 n n C22 C23 T8I sing 416 n y C20 C19 T8I doub 417 n y N08 C09 T8I sing 418 n n C23 C24 T8I doub 419 n y C19 C24 T8I sing 420 n y C19 C17 T8I sing 421 n n N18 C17 T8I sing 422 n n N18 C11 T8I sing 423 n n C09 O10 T8I doub 424 n n C09 C11 T8I sing 425 n n C17 N16 T8I doub 426 n n C11 C12 T8I doub 427 n n N16 C14 T8I sing 428 n n C12 C14 T8I sing 429 n n C12 O13 T8I sing 430 n n C14 O15 T8I doub 431 n n C01 H1 T8I sing 432 n n C01 H2 T8I sing 433 n n C01 H3 T8I sing 434 n n C04 H4 T8I sing 435 n n C06 H5 T8I sing 436 n n C06 H6 T8I sing 437 n n C07 H7 T8I sing 438 n n C07 H8 T8I sing 439 n n C20 H9 T8I sing 440 n n C21 H10 T8I sing 441 n n C23 H11 T8I sing 442 n n C24 H12 T8I sing 443 n n C29 H13 T8I sing 444 n n C30 H14 T8I sing 445 n n N08 H15 T8I sing 446 n n N18 H16 T8I sing 447 n n O13 H17 T8I sing 448 n n # _atom_sites.entry_id 8DQS _atom_sites.fract_transf_matrix[1][1] 0.011264 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 201 MN MN . C 2 MN A 1 202 202 MN MN . D 3 T8I A 1 203 203 T8I 010 . E 4 QQ4 A 1 204 204 QQ4 PVP . F 5 HOH A 1 301 3 HOH HOH . F 5 HOH A 2 302 16 HOH HOH . F 5 HOH A 3 303 1 HOH HOH . F 5 HOH A 4 304 9 HOH HOH . F 5 HOH A 5 305 7 HOH HOH . F 5 HOH A 6 306 15 HOH HOH . F 5 HOH A 7 307 13 HOH HOH . F 5 HOH A 8 308 6 HOH HOH . F 5 HOH A 9 309 11 HOH HOH . F 5 HOH A 10 310 5 HOH HOH . F 5 HOH A 11 311 14 HOH HOH . F 5 HOH A 12 312 10 HOH HOH . F 5 HOH A 13 313 4 HOH HOH . F 5 HOH A 14 314 12 HOH HOH . F 5 HOH A 15 315 8 HOH HOH . F 5 HOH A 16 316 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 T8I . . . D 3 39.544 9.908 14.104 1 134.74 ? C01 T8I 203 A 1 HETATM 2 C C03 T8I . . . D 3 39.93 10.829 11.965 1 135.49 ? C03 T8I 203 A 1 HETATM 3 C C04 T8I . . . D 3 41.041 11.524 12.406 1 134.35 ? C04 T8I 203 A 1 HETATM 4 C C05 T8I . . . D 3 41.525 12.62 11.708 1 133.97 ? C05 T8I 203 A 1 HETATM 5 C C06 T8I . . . D 3 42.755 13.402 12.196 1 134.05 ? C06 T8I 203 A 1 HETATM 6 C C07 T8I . . . D 3 43.056 13.241 13.695 1 127.95 ? C07 T8I 203 A 1 HETATM 7 C C09 T8I . . . D 3 41.766 14.104 15.761 1 96.24 ? C09 T8I 203 A 1 HETATM 8 C C11 T8I . . . D 3 40.372 14.205 16.371 1 100.67 ? C11 T8I 203 A 1 HETATM 9 C C12 T8I . . . D 3 40.095 14.864 17.683 1 93.5 ? C12 T8I 203 A 1 HETATM 10 C C14 T8I . . . D 3 38.694 14.92 18.212 1 89.59 ? C14 T8I 203 A 1 HETATM 11 C C17 T8I . . . D 3 37.91 13.706 16.169 1 109.91 ? C17 T8I 203 A 1 HETATM 12 C C19 T8I . . . D 3 36.746 13.124 15.414 1 116.75 ? C19 T8I 203 A 1 HETATM 13 C C20 T8I . . . D 3 36.957 12.463 14.223 1 116.85 ? C20 T8I 203 A 1 HETATM 14 C C21 T8I . . . D 3 35.863 11.944 13.555 1 134.57 ? C21 T8I 203 A 1 HETATM 15 C C22 T8I . . . D 3 34.587 12.096 14.085 1 149.83 ? C22 T8I 203 A 1 HETATM 16 C C23 T8I . . . D 3 34.394 12.765 15.284 1 137.87 ? C23 T8I 203 A 1 HETATM 17 C C24 T8I . . . D 3 35.483 13.286 15.953 1 127.65 ? C24 T8I 203 A 1 HETATM 18 C C25 T8I . . . D 3 33.38 11.518 13.345 1 153.05 ? C25 T8I 203 A 1 HETATM 19 C C29 T8I . . . D 3 40.84 12.965 10.549 1 124.59 ? C29 T8I 203 A 1 HETATM 20 C C30 T8I . . . D 3 39.732 12.23 10.147 1 118.17 ? C30 T8I 203 A 1 HETATM 21 F F26 T8I . . . D 3 33.632 11.515 11.998 1 137.06 ? F26 T8I 203 A 1 HETATM 22 F F27 T8I . . . D 3 32.271 12.276 13.602 1 149.61 ? F27 T8I 203 A 1 HETATM 23 F F28 T8I . . . D 3 33.163 10.242 13.79 1 160.97 ? F28 T8I 203 A 1 HETATM 24 N N08 T8I . . . D 3 41.843 13.447 14.47 1 115.82 ? N08 T8I 203 A 1 HETATM 25 N N16 T8I . . . D 3 37.614 14.346 17.461 1 100.81 ? N16 T8I 203 A 1 HETATM 26 N N18 T8I . . . D 3 39.279 13.632 15.619 1 111.84 ? N18 T8I 203 A 1 HETATM 27 N N31 T8I . . . D 3 39.308 11.193 10.853 1 130.97 ? N31 T8I 203 A 1 HETATM 28 O O02 T8I . . . D 3 39.478 9.732 12.714 1 147.78 ? O02 T8I 203 A 1 HETATM 29 O O10 T8I . . . D 3 42.724 14.535 16.303 1 98.53 ? O10 T8I 203 A 1 HETATM 30 O O13 T8I . . . D 3 41.146 15.419 18.411 1 94.33 ? O13 T8I 203 A 1 HETATM 31 O O15 T8I . . . D 3 38.43 15.43 19.237 1 84.96 ? O15 T8I 203 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #